PMC:6988272 / 4016-4939
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 87 | 21-38 | Species | denotes | novel coronavirus | Tax:2697049 |
| 88 | 40-49 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 89 | 797-806 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 90 | 824-833 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 91 | 109-118 | Disease | denotes | pneumonia | MESH:D011014 |
| 92 | 251-270 | Disease | denotes | 2019-nCov infection | MESH:C000657245 |
| 93 | 276-285 | Disease | denotes | pneumonia | MESH:D011014 |
| 94 | 474-479 | Disease | denotes | fever | MESH:D005334 |
| 95 | 504-513 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T100 | 27-38 | NCBITaxon:11118 | denotes | coronavirus |
| T99 | 40-49 | SP_7 | denotes | 2019-nCoV |
| T98 | 172-179 | SO:0000704 | denotes | genetic |
| T97 | 196-201 | NCBITaxon:10239 | denotes | virus |
| T96 | 251-260 | SP_7 | denotes | 2019-nCov |
| T95 | 521-526 | CL:0000738 | denotes | white |
| T94 | 527-532 | CL:0000738;UBERON:0000178 | denotes | blood |
| T93 | 533-537 | CL:0000738 | denotes | cell |
| T92 | 565-575 | CL:0000542 | denotes | lymphocyte |
| T91 | 588-598 | CHEBI:33282;CHEBI:33282 | denotes | antibiotic |
| T90 | 763-774 | UBERON:0001004 | denotes | respiratory |
| T89 | 797-806 | SP_7 | denotes | 2019-nCoV |
| T88 | 824-833 | SP_7 | denotes | 2019-nCoV |
| T87 | 843-849 | SO:0001026 | denotes | genome |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 521-537 | Body_part | denotes | white blood cell | http://purl.org/sig/ont/fma/fma62852 |
| T2 | 533-537 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T3 | 565-575 | Body_part | denotes | lymphocyte | http://purl.org/sig/ont/fma/fma62863 |
| T4 | 843-849 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 527-532 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T25 | 109-118 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T26 | 251-270 | Disease | denotes | 2019-nCov infection | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T27 | 261-270 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T28 | 276-285 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T29 | 504-513 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 19-20 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 196-201 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T33 | 206-208 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T34 | 218-220 | http://purl.obolibrary.org/obo/CLO_0053794 | denotes | 41 |
| T35 | 372-375 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T36 | 527-532 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T37 | 533-537 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T38 | 729-730 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 761-762 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 588-598 | Chemical | denotes | antibiotic | http://purl.obolibrary.org/obo/CHEBI_33281 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 0-128 | Sentence | denotes | On 9 January 2020, a novel coronavirus, 2019-nCoV, was officially identified as the cause of the outbreak of pneumonia in Wuhan. |
| T31 | 129-314 | Sentence | denotes | Following the official announcement of the genetic sequence of the virus, on 11 January, 41 laboratory-confirmed cases of 2019-nCov infection with pneumonia were reported in Wuhan [15]. |
| T32 | 315-861 | Sentence | denotes | While the case definition for laboratory-confirmed cases has not been officially published, our understanding is that the initial case definition required (i) fever, (ii) x-ray evidence of pneumonia, (iii) white blood cell count normal or low or low lymphocyte count, (iv) antibiotic treatment for 3 days without improvement, in addition to (v) one or more recent visits to Wuhan or direct or indirect exposure to a wet market in Wuhan, and (vi) a respiratory specimen positive for 2019-nCoV and confirmed as 2019-nCoV by whole genome sequencing. |
| T33 | 862-923 | Sentence | denotes | The earliest known case had illness onset on 8 December 2019. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T7 | 109-118 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T8 | 276-285 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T9 | 474-479 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T10 | 504-513 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |