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PMC:6988271 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T21 3434-3445 NCBITaxon:11118 denotes coronavirus
T3 42-51 SP_7 denotes 2019-nCoV
T4 29-40 NCBITaxon:11118 denotes coronavirus
T39 754-762 SP_10 denotes SARS-CoV
T38 792-803 UBERON:0001004 denotes respiratory
T37 814-818 SP_10 denotes SARS
T36 820-831 NCBITaxon:11118 denotes coronavirus
T35 992-998 GO:0016265 denotes deaths
T34 1120-1131 NCBITaxon:11118 denotes coronavirus
T33 1149-1158 SP_7 denotes 2019-nCoV
T32 1278-1283 NCBITaxon:10239 denotes viral
T31 1284-1290 SO:0001026 denotes genome
T30 1597-1602 SP_6;NCBITaxon:9606 denotes human
T29 1606-1611 SP_6;NCBITaxon:9606 denotes human
T28 1783-1788 NCBITaxon:10239 denotes virus
T27 1958-1967 SP_7 denotes 2019-nCoV
T26 2093-2098 SO:0000704 denotes genes
T25 2121-2126 NCBITaxon:10239 denotes virus
T23 3003-3012 SP_7 denotes 2019-nCoV
T22 3234-3244 GO:0065007 denotes monitoring
T24 2542-2551 SP_7 denotes 2019-nCoV

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1284-1290 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 175-184 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 398-407 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 507-516 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 754-762 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 754-758 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 779-812 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 814-818 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 1462-1471 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T9 2542-2561 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T10 2552-2561 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 107-119 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T2 239-240 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 277-278 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 330-331 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 373-374 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T6 643-651 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T7 865-868 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 917-918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1552-1553 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1597-1602 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 1606-1611 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 1635-1636 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1783-1788 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 1976-1977 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2034-2035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2093-2098 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T17 2121-2126 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T18 2228-2229 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2302-2303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2373-2380 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T21 2406-2407 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3061-3062 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 3134-3147 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisations
T24 3293-3296 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 3304-3305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3367-3372 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T27 3425-3427 http://purl.obolibrary.org/obo/CLO_0037161 denotes en

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 3425-3427 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2962-2973 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-52 Sentence denotes Note from the editors: novel coronavirus (2019-nCoV)
T2 54-271 Sentence denotes At the end of 2019, on 31 December, the World Health Organization (WHO) Country Office in China was informed of cases of pneumonia of unknown aetiology that had been detected in Wuhan, a city in the province of Hubei.
T3 272-425 Sentence denotes Just a day earlier, on 30 December, ProMED-mail published a post calling for more information about ‘A cluster of undiagnosed pneumonia - China (Hubei)’.
T4 426-560 Sentence denotes The post indicated that there had been some 20 patients diagnosed with ‘atypical pneumonia’ with seven of them being severely ill [1].
T5 561-850 Sentence denotes In their accompanying note, the post’s moderator stated ‘the type of social media activity that is now surrounding this event, is very reminiscent of the original “rumors" that accompanied the SARS-CoV outbreak.’ [Ed. severe acute respiratory syndrome (SARS) coronavirus outbreak in 2003].
T6 851-1079 Sentence denotes The situation has continued to evolve rapidly since then and just a few weeks later, as at 23 January, 614 laboratory-confirmed cases and 17 deaths have been reported [2] including some cases detected outside mainland China [3].
T7 1080-1235 Sentence denotes Meanwhile, on 7 January 2020, the novel coronavirus, currently named 2019-nCoV, was officially announced as the causative agent by Chinese authorities [3].
T8 1236-1512 Sentence denotes In order to support public health action, viral genome sequences were released by Chinese researchers on 10 January [4] and 2 days later, four further sequences were also made available on the Global Initiative on Sharing All Influenza Data (GISAID) (https://www.gisaid.org/).
T9 1513-1685 Sentence denotes While more cases are being reported on a daily basis and there is evidence for some human-to-human transmission in China, a number of important questions remain unanswered.
T10 1686-1849 Sentence denotes For example, there is no certainty about the source of the outbreak, the transmissibility of the virus as well as the clinical picture and severity of the disease.
T11 1850-1968 Sentence denotes In this issue of Eurosurveillance, we are publishing two articles on different aspects of the newly emerged 2019-nCoV.
T12 1969-2202 Sentence denotes One is a research article by Corman et al. on the development of a diagnostic methodology based on RT-PCR of the E and RdRp genes, without the need for virus material; the assays were validated in five international laboratories [5].
T13 2203-2392 Sentence denotes Before this publication, a description of the assays had already been made publically available on a dedicated WHO webpage [6] to support rapid development of laboratory testing capacities.
T14 2393-2664 Sentence denotes The other is a rapid communication where researchers based in Hong Kong report on their attempt to estimate the severity among hospitalised cases of 2019-nCoV infection through modelling based on publically available information, mainly from Wuhan health authorities [7].
T15 2665-2814 Sentence denotes It also points out the need for more detailed information to make an informed evaluation of the situation as basis for public health decision-making.
T16 2815-3112 Sentence denotes Today, the WHO Director-General Tedros Adhanom Ghebreyesus, taking into consideration the deliberations of the members of the International Health Regulations (IHR) Emergency Committee on 2019-nCoV in their second meeting, decided not to declare a public health emergency of international concern.
T17 3113-3287 Sentence denotes International health organisations such as the European Centre for Disease Prevention and Control (ECDC) and the WHO are monitoring the situation and provide regular updates.
T18 3288-3452 Sentence denotes ECDC has set up a dedicated webpage on which updates and risk assessments with focus on Europe are available: https://www.ecdc.europa.eu/en/novel-coronavirus-china.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 175-184 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 398-407 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 507-516 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 23-40 Species denotes novel coronavirus Tax:2697049
3 42-51 Species denotes 2019-nCoV Tax:2697049
10 473-481 Species denotes patients Tax:9606
11 754-762 Species denotes SARS-CoV Tax:694009
12 779-831 Species denotes severe acute respiratory syndrome (SARS) coronavirus Tax:694009
13 175-184 Disease denotes pneumonia MESH:D011014
14 398-407 Disease denotes pneumonia MESH:D011014
15 507-516 Disease denotes pneumonia MESH:D011014
19 1114-1131 Species denotes novel coronavirus Tax:2697049
20 1149-1158 Species denotes 2019-nCoV Tax:2697049
21 992-998 Disease denotes deaths MESH:D003643
24 1597-1602 Species denotes human Tax:9606
25 1606-1611 Species denotes human Tax:9606
29 2088-2092 Gene denotes RdRp Gene:43740578
30 1958-1967 Species denotes 2019-nCoV Tax:2697049
31 2542-2561 Disease denotes 2019-nCoV infection MESH:C000657245
33 3003-3012 Species denotes 2019-nCoV Tax:2697049
35 3428-3445 Species denotes novel-coronavirus Tax:2697049