PMC:6988269 / 8901-10011
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T26 | 774-780 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T22 | 126-130 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T23 | 166-170 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T24 | 265-269 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T25 | 1027-1035 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 1027-1031 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 1071-1075 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T77 | 25-30 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T78 | 124-125 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T79 | 136-141 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T80 | 164-165 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T81 | 278-283 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T82 | 503-504 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T83 | 629-631 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T84 | 1056-1059 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 0-142 | Sentence | denotes | Before public release of virus sequences from cases of 2019-nCoV, we relied on social media reports announcing detection of a SARS-like virus. |
| T74 | 143-211 | Sentence | denotes | We thus assumed that a SARS-related CoV is involved in the outbreak. |
| T75 | 212-333 | Sentence | denotes | We downloaded all complete and partial (if > 400 nt) SARS-related virus sequences available in GenBank by 1 January 2020. |
| T76 | 334-533 | Sentence | denotes | The list (n = 729 entries) was manually checked and artificial sequences (laboratory-derived, synthetic, etc), as well as sequence duplicates were removed, resulting in a final list of 375 sequences. |
| T77 | 534-633 | Sentence | denotes | These sequences were aligned and the alignment was used for assay design (Supplementary Figure S1). |
| T78 | 634-792 | Sentence | denotes | Upon release of the first 2019-nCoV sequence at virological.org, three assays were selected based on how well they matched to the 2019-nCoV genome (Figure 1). |
| T79 | 793-973 | Sentence | denotes | The alignment was complemented by additional sequences released independently on GISAID (https://www.gisaid.org), confirming the good matching of selected primers to all sequences. |
| T80 | 974-1110 | Sentence | denotes | Alignments of primer binding domains with 2019-nCoV, SARS-CoV as well as selected bat-associated SARS-related CoV are shown in Figure 2. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 170 | 55-64 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 171 | 166-182 | Species | denotes | SARS-related CoV | Tax:694009 |
| 172 | 265-283 | Species | denotes | SARS-related virus | Tax:694009 |
| 173 | 386-406 | Species | denotes | artificial sequences | Tax:81077 |
| 174 | 660-669 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 175 | 764-773 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 176 | 1016-1025 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 177 | 1027-1035 | Species | denotes | SARS-CoV | Tax:694009 |
| 178 | 1071-1087 | Species | denotes | SARS-related CoV | Tax:694009 |
| 179 | 428-437 | Species | denotes | synthetic | Tax:2086595 |