PMC:6988269 / 8304-8725 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T22","span":{"begin":43,"end":47},"obj":"Body_part"},{"id":"T23","span":{"begin":135,"end":139},"obj":"Body_part"},{"id":"T24","span":{"begin":171,"end":175},"obj":"Body_part"},{"id":"T25","span":{"begin":274,"end":277},"obj":"Body_part"}],"attributes":[{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T20","span":{"begin":265,"end":273},"obj":"Disease"},{"id":"T21","span":{"begin":265,"end":269},"obj":"Disease"}],"attributes":[{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T72","span":{"begin":4,"end":5},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T73","span":{"begin":43,"end":47},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T74","span":{"begin":113,"end":120},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T75","span":{"begin":135,"end":139},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T76","span":{"begin":171,"end":175},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T28","span":{"begin":415,"end":420},"obj":"Chemical"}],"attributes":[{"id":"A28","pred":"chebi_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/CHEBI_50406"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}

{"project":"LitCovid-sentences","denotations":[{"id":"T67","span":{"begin":0,"end":146},"obj":"Sentence"},{"id":"T68","span":{"begin":147,"end":320},"obj":"Sentence"},{"id":"T69","span":{"begin":321,"end":421},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}

{"project":"LitCovid-PubTator","denotations":[{"id":"154","span":{"begin":130,"end":134},"obj":"Gene"},{"id":"155","span":{"begin":166,"end":170},"obj":"Gene"},{"id":"156","span":{"begin":371,"end":375},"obj":"Gene"},{"id":"157","span":{"begin":227,"end":236},"obj":"Species"},{"id":"158","span":{"begin":265,"end":273},"obj":"Species"},{"id":"159","span":{"begin":396,"end":405},"obj":"Species"}],"attributes":[{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"Gene:43740578"},{"id":"A155","pred":"tao:has_database_id","subj":"155","obj":"Gene:43740578"},{"id":"A156","pred":"tao:has_database_id","subj":"156","obj":"Gene:43740578"},{"id":"A157","pred":"tao:has_database_id","subj":"157","obj":"Tax:2697049"},{"id":"A158","pred":"tao:has_database_id","subj":"158","obj":"Tax:694009"},{"id":"A159","pred":"tao:has_database_id","subj":"159","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay. Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control. Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe."}