> top > docs > PMC:6988269 > spans > 3944-5366 > annotations

PMC:6988269 / 3944-5366 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 33-37 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T5 88-92 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T6 804-810 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T7 822-826 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T8 831-837 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 1368-1371 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 804-810 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T2 822-826 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T3 831-837 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T13 922-926 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 33-37 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T34 88-92 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T35 167-174 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T36 354-360 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T37 611-613 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T38 822-826 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T39 910-913 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T40 994-1000 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T41 1050-1053 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T42 1108-1111 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T43 1163-1165 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T44 1166-1169 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T45 1225-1228 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T46 1284-1287 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T47 1344-1347 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 611-613 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T6 715-718 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 860-875 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T3 866-875 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T32 0-87 Sentence denotes Clinical samples and coronavirus cell culture supernatants for initial assay evaluation
T33 88-250 Sentence denotes Cell culture supernatants containing typed coronaviruses and other respiratory viruses were provided by Charité and University of Hong Kong research laboratories.
T34 251-520 Sentence denotes Respiratory samples were obtained during 2019 from patients hospitalised at Charité medical centre and tested by the NxTAG respiratory pathogen panel (Luminex, S´Hertogenbosch, The Netherlands) or in cases of MERS-CoV by the MERS-CoV upE assay as published before [10].
T35 521-764 Sentence denotes Additional samples were selected from biobanks at the Rijksinstituut voor Volksgezondheid en Milieu (RIVM), Bilthoven, at Erasmus University Medical Center, Rotterdam, at Public Health England (PHE), London, and at the University of Hong Kong.
T36 765-883 Sentence denotes Samples from all collections comprised sputum as well as nose and throat swabs with or without viral transport medium.
T37 884-1353 Sentence denotes Faecal samples containing bat-derived SARS-related CoV samples (identified by GenBank accession numbers) were tested: KC633203, Betacoronavirus BtCoV/Rhi_eur/BB98–98/BGR/2008; KC633204, Betacoronavirus BtCoV/Rhi_eur/BB98–92/BGR/2008; KC633201, Betacoronavirus BtCoV/Rhi_bla/BB98–22/BGR/2008; GU190221 Betacoronavirus Bat coronavirus BR98–19/BGR/2008; GU190222 Betacoronavirus Bat coronavirus BM98–01/BGR/2008; GU190223, Betacoronavirus Bat coronavirus BM98–13/BGR/2008.
T38 1354-1422 Sentence denotes All synthetic RNA used in this study was photometrically quantified.

2_test

Id Subject Object Predicate Lexical cue
31992387-23041020-29325739 516-518 23041020 denotes 10

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
71 21-32 Species denotes coronavirus Tax:11118
80 131-144 Species denotes coronaviruses Tax:11118
81 302-310 Species denotes patients Tax:9606
82 460-468 Species denotes MERS-CoV Tax:1335626
83 476-484 Species denotes MERS-CoV Tax:1335626
84 155-166 Species denotes respiratory Tax:1439707
85 251-262 Species denotes Respiratory Tax:1439707
86 374-385 Species denotes respiratory Tax:1439707
87 575-610 Disease denotes Rijksinstituut voor Volksgezondheid
98 922-938 Species denotes SARS-related CoV Tax:694009
99 1012-1027 Species denotes Betacoronavirus Tax:694002
100 1070-1085 Species denotes Betacoronavirus Tax:694002
101 1128-1143 Species denotes Betacoronavirus Tax:694002
102 1185-1200 Species denotes Betacoronavirus Tax:694002
103 1201-1216 Species denotes Bat coronavirus Tax:1508220
104 1244-1259 Species denotes Betacoronavirus Tax:694002
105 1260-1292 Species denotes Bat coronavirus BM98–01/BGR/2008 Tax:864602
106 1304-1319 Species denotes Betacoronavirus Tax:694002
107 1320-1352 Species denotes Bat coronavirus BM98–13/BGR/2008 Tax:864605
109 1358-1371 Species denotes synthetic RNA Tax:2086595

MyTest

Id Subject Object Predicate Lexical cue
31992387-23041020-29325739 516-518 23041020 denotes 10