PMC:6988269 / 1363-3933
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 344-350 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T2 | 549-556 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T3 | 689-695 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T4 | 117-126 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T5 | 660-669 | Disease | denotes | Influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T6 | 791-824 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 826-830 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T8 | 903-907 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T9 | 1551-1572 | Disease | denotes | respiratory infection | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T10 | 1563-1572 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T11 | 2502-2510 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T12 | 2502-2506 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 43-55 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T12 | 204-205 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T13 | 336-337 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T14 | 726-727 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T15 | 728-733 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T16 | 768-769 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T17 | 845-846 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T18 | 911-917 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T19 | 952-953 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T20 | 970-977 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T21 | 1009-1013 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T22 | 1082-1087 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T23 | 1287-1292 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T24 | 1296-1301 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T25 | 1407-1412 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T26 | 1416-1421 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T27 | 1619-1626 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T28 | 1901-1905 | http://purl.obolibrary.org/obo/CLO_0001442 | denotes | 6-12 |
| T29 | 1936-1941 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T30 | 2088-2093 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T31 | 2270-2271 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 2376-2381 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 2546-2558 | Chemical | denotes | nucleic acid | http://purl.obolibrary.org/obo/CHEBI_33696 |
| T4 | 2554-2558 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1644-1654 | http://purl.obolibrary.org/obo/GO_0046903 | denotes | secretions |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15 | 0-12 | Sentence | denotes | Introduction |
| T16 | 13-203 | Sentence | denotes | According to the World Health Organization (WHO), the WHO China Country Office was informed of cases of pneumonia of unknown aetiology in Wuhan City, Hubei Province, on 31 December 2019 [1]. |
| T17 | 204-335 | Sentence | denotes | A novel coronavirus currently termed 2019-nCoV was officially announced as the causative agent by Chinese authorities on 7 January. |
| T18 | 336-684 | Sentence | denotes | A viral genome sequence was released for immediate public health support via the community online resource virological.org on 10 January (Wuhan-Hu-1, GenBank accession number MN908947 [2]), followed by four other genomes deposited on 12 January in the viral sequence database curated by the Global Initiative on Sharing All Influenza Data (GISAID). |
| T19 | 685-924 | Sentence | denotes | The genome sequences suggest presence of a virus closely related to the members of a viral species termed severe acute respiratory syndrome (SARS)-related CoV, a species defined by the agent of the 2002/03 outbreak of SARS in humans [3,4]. |
| T20 | 925-1033 | Sentence | denotes | The species also comprises a large number of viruses mostly detected in rhinolophid bats in Asia and Europe. |
| T21 | 1034-1124 | Sentence | denotes | As at 20 January 2019, 282 laboratory-confirmed human cases have been notified to WHO [5]. |
| T22 | 1125-1272 | Sentence | denotes | Confirmed cases in travellers from Wuhan were announced on 13 and 17 January in Thailand as well as on 15 January in Japan and 19 January in Korea. |
| T23 | 1273-1435 | Sentence | denotes | The extent of human-to-human transmission of 2019-nCoV is unclear at the time of writing of this report but there is evidence of some human-to-human transmission. |
| T24 | 1436-1541 | Sentence | denotes | Among the foremost priorities to facilitate public health interventions is reliable laboratory diagnosis. |
| T25 | 1542-1655 | Sentence | denotes | In acute respiratory infection, RT-PCR is routinely used to detect causative viruses from respiratory secretions. |
| T26 | 1656-1907 | Sentence | denotes | We have previously demonstrated the feasibility of introducing robust detection technology based on real-time RT-PCR in public health laboratories during international health emergencies by coordination between public and academic laboratories [6-12]. |
| T27 | 1908-2053 | Sentence | denotes | In all of these situations, virus isolates were available as the primary substrate for establishing and controlling assays and assay performance. |
| T28 | 2054-2215 | Sentence | denotes | In the present case of 2019-nCoV, virus isolates or samples from infected patients have so far not become available to the international public health community. |
| T29 | 2216-2421 | Sentence | denotes | We report here on the establishment and validation of a diagnostic workflow for 2019-nCoV screening and specific confirmation, designed in absence of available virus isolates or original patient specimens. |
| T30 | 2422-2570 | Sentence | denotes | Design and validation were enabled by the close genetic relatedness to the 2003 SARS-CoV, and aided by the use of synthetic nucleic acid technology. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 117-126 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T2 | 1551-1572 | Phenotype | denotes | respiratory infection | http://purl.obolibrary.org/obo/HP_0011947 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 31992387-14681510-29325737 | 921-922 | 14681510 | denotes | 4 |
| 31992387-12736651-29325738 | 1901-1902 | 12736651 | denotes | 6 |
| 31992387-23231891-29325738 | 1901-1902 | 23231891 | denotes | 6 |
| 31992387-12690091-29325738 | 1901-1902 | 12690091 | denotes | 6 |
| 31992387-23611031-29325738 | 1901-1902 | 23611031 | denotes | 6 |
| 31992387-23041020-29325738 | 1901-1902 | 23041020 | denotes | 6 |
| 31992387-19239767-29325738 | 1901-1902 | 19239767 | denotes | 6 |
| 31992387-27994281-29325738 | 1901-1902 | 27994281 | denotes | 6 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 33 | 206-223 | Species | denotes | novel coronavirus | Tax:2697049 |
| 34 | 241-250 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 35 | 826-843 | Species | denotes | SARS)-related CoV | Tax:694009 |
| 36 | 911-917 | Species | denotes | humans | Tax:9606 |
| 37 | 117-126 | Disease | denotes | pneumonia | MESH:D011014 |
| 38 | 798-824 | Disease | denotes | acute respiratory syndrome | MESH:D012120 |
| 39 | 511-519 | CellLine | denotes | MN908947 | CVCL:U508 |
| 46 | 1082-1087 | Species | denotes | human | Tax:9606 |
| 47 | 1287-1292 | Species | denotes | human | Tax:9606 |
| 48 | 1296-1301 | Species | denotes | human | Tax:9606 |
| 49 | 1318-1327 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 50 | 1407-1412 | Species | denotes | human | Tax:9606 |
| 51 | 1416-1421 | Species | denotes | human | Tax:9606 |
| 54 | 1632-1643 | Species | denotes | respiratory | Tax:1439707 |
| 55 | 1551-1572 | Disease | denotes | respiratory infection | MESH:D012141 |
| 63 | 2077-2086 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 64 | 2128-2136 | Species | denotes | patients | Tax:9606 |
| 65 | 2296-2305 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 66 | 2403-2410 | Species | denotes | patient | Tax:9606 |
| 67 | 2502-2510 | Species | denotes | SARS-CoV | Tax:694009 |
| 68 | 2536-2545 | Species | denotes | synthetic | Tax:2086595 |
| 69 | 2119-2127 | Disease | denotes | infected | MESH:D007239 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 31992387-14681510-29325737 | 921-922 | 14681510 | denotes | 4 |
| 31992387-12736651-29325738 | 1901-1902 | 12736651 | denotes | 6 |
| 31992387-23231891-29325738 | 1901-1902 | 23231891 | denotes | 6 |
| 31992387-12690091-29325738 | 1901-1902 | 12690091 | denotes | 6 |
| 31992387-23611031-29325738 | 1901-1902 | 23611031 | denotes | 6 |
| 31992387-23041020-29325738 | 1901-1902 | 23041020 | denotes | 6 |
| 31992387-19239767-29325738 | 1901-1902 | 19239767 | denotes | 6 |
| 31992387-27994281-29325738 | 1901-1902 | 27994281 | denotes | 6 |