PMC:6988269 / 10481-11185 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/6988269","sourcedb":"PMC","sourceid":"6988269","source_url":"https://www.ncbi.nlm.nih.gov/pmc/6988269","text":"The panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays. The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470). Dots represent identical nucleotides compared with the WH_Human_1 sequence. Nucleotide substitutions are specified. Blue arrows: oligonucleotides as specified in Table 1. More comprehensive alignments can be found in the Supplement.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T40","span":{"begin":497,"end":508},"obj":"Body_part"},{"id":"T41","span":{"begin":548,"end":558},"obj":"Body_part"}],"attributes":[{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma82740"},{"subj":"T40","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T41","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T32","span":{"begin":104,"end":112},"obj":"Disease"},{"id":"T33","span":{"begin":104,"end":108},"obj":"Disease"},{"id":"T34","span":{"begin":263,"end":267},"obj":"Disease"},{"id":"T35","span":{"begin":385,"end":389},"obj":"Disease"}],"attributes":[{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T91","span":{"begin":154,"end":155},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T92","span":{"begin":230,"end":231},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T93","span":{"begin":248,"end":251},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T94","span":{"begin":252,"end":257},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T95","span":{"begin":288,"end":291},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T96","span":{"begin":398,"end":401},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"}],"attributes":[{"subj":"T91","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T95","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T96","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T34","span":{"begin":292,"end":294},"obj":"Chemical"},{"id":"T35","span":{"begin":497,"end":508},"obj":"Chemical"},{"id":"T36","span":{"begin":548,"end":558},"obj":"Chemical"},{"id":"T37","span":{"begin":601,"end":617},"obj":"Chemical"}],"attributes":[{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_74815"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_7754"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T85","span":{"begin":0,"end":201},"obj":"Sentence"},{"id":"T86","span":{"begin":202,"end":471},"obj":"Sentence"},{"id":"T87","span":{"begin":472,"end":547},"obj":"Sentence"},{"id":"T88","span":{"begin":548,"end":587},"obj":"Sentence"},{"id":"T89","span":{"begin":588,"end":642},"obj":"Sentence"},{"id":"T90","span":{"begin":643,"end":704},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T85","pred":"source","obj":"LitCovid-sentences"},{"subj":"T86","pred":"source","obj":"LitCovid-sentences"},{"subj":"T87","pred":"source","obj":"LitCovid-sentences"},{"subj":"T88","pred":"source","obj":"LitCovid-sentences"},{"subj":"T89","pred":"source","obj":"LitCovid-sentences"},{"subj":"T90","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"199","span":{"begin":43,"end":52},"obj":"Species"},{"id":"200","span":{"begin":104,"end":112},"obj":"Species"},{"id":"201","span":{"begin":263,"end":279},"obj":"Species"},{"id":"202","span":{"begin":402,"end":405},"obj":"Species"},{"id":"203","span":{"begin":601,"end":617},"obj":"Chemical"}],"attributes":[{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"Tax:2697049"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Tax:694009"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"Tax:694009"},{"id":"A202","pred":"tao:has_database_id","subj":"202","obj":"Tax:11118"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"MESH:D009841"},{"subj":"199","pred":"source","obj":"LitCovid-PubTator"},{"subj":"200","pred":"source","obj":"LitCovid-PubTator"},{"subj":"201","pred":"source","obj":"LitCovid-PubTator"},{"subj":"202","pred":"source","obj":"LitCovid-PubTator"},{"subj":"203","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecc5","default":true},{"id":"LitCovid-PD-MONDO","color":"#ecab93"},{"id":"LitCovid-PD-CLO","color":"#9394ec"},{"id":"LitCovid-PD-CHEBI","color":"#aeec93"},{"id":"LitCovid-sentences","color":"#ec93c8"},{"id":"LitCovid-PubTator","color":"#93e2ec"}]}]}}