PMC:6988269 / 10012-10380 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/6988269","sourcedb":"PMC","sourceid":"6988269","source_url":"https://www.ncbi.nlm.nih.gov/pmc/6988269","text":"Figure 1 Relative positions of amplicon targets on the SARS coronavirus and the 2019 novel coronavirus genome\nE: envelope protein gene; M: membrane protein gene; N: nucleocapsid protein gene; ORF: open reading frame; RdRp: RNA-dependent RNA polymerase gene; S: spike protein gene.\nNumbers below amplicons are genome positions according to SARS-CoV, GenBank NC_004718.","divisions":[{"label":"label","span":{"begin":0,"end":8}},{"label":"caption","span":{"begin":10,"end":110}},{"label":"p","span":{"begin":10,"end":110}},{"label":"p","span":{"begin":111,"end":281}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T27","span":{"begin":104,"end":110},"obj":"Body_part"},{"id":"T28","span":{"begin":123,"end":130},"obj":"Body_part"},{"id":"T29","span":{"begin":131,"end":135},"obj":"Body_part"},{"id":"T30","span":{"begin":149,"end":156},"obj":"Body_part"},{"id":"T31","span":{"begin":157,"end":161},"obj":"Body_part"},{"id":"T32","span":{"begin":179,"end":186},"obj":"Body_part"},{"id":"T33","span":{"begin":187,"end":191},"obj":"Body_part"},{"id":"T34","span":{"begin":224,"end":227},"obj":"Body_part"},{"id":"T35","span":{"begin":238,"end":241},"obj":"Body_part"},{"id":"T36","span":{"begin":253,"end":257},"obj":"Body_part"},{"id":"T37","span":{"begin":268,"end":275},"obj":"Body_part"},{"id":"T38","span":{"begin":276,"end":280},"obj":"Body_part"},{"id":"T39","span":{"begin":310,"end":316},"obj":"Body_part"}],"attributes":[{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A29","pred":"fma_id","subj":"T29","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A30","pred":"fma_id","subj":"T30","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A31","pred":"fma_id","subj":"T31","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A32","pred":"fma_id","subj":"T32","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A33","pred":"fma_id","subj":"T33","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma84116"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T35","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T36","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T38","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T39","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":56,"end":60},"obj":"Disease"},{"id":"T29","span":{"begin":340,"end":348},"obj":"Disease"},{"id":"T30","span":{"begin":340,"end":344},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T85","span":{"begin":131,"end":135},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T86","span":{"begin":140,"end":148},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T87","span":{"begin":157,"end":161},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T88","span":{"begin":187,"end":191},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T89","span":{"begin":253,"end":257},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T90","span":{"begin":276,"end":280},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"attributes":[{"subj":"T85","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T86","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T87","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T88","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T29","span":{"begin":123,"end":130},"obj":"Chemical"},{"id":"T30","span":{"begin":149,"end":156},"obj":"Chemical"},{"id":"T31","span":{"begin":179,"end":186},"obj":"Chemical"},{"id":"T32","span":{"begin":268,"end":275},"obj":"Chemical"}],"attributes":[{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A30","pred":"chebi_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A31","pred":"chebi_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T81","span":{"begin":0,"end":110},"obj":"Sentence"},{"id":"T82","span":{"begin":111,"end":281},"obj":"Sentence"},{"id":"T83","span":{"begin":282,"end":368},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T81","pred":"source","obj":"LitCovid-sentences"},{"subj":"T82","pred":"source","obj":"LitCovid-sentences"},{"subj":"T83","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"182","span":{"begin":56,"end":72},"obj":"Species"},{"id":"183","span":{"begin":81,"end":103},"obj":"Species"},{"id":"186","span":{"begin":218,"end":222},"obj":"Gene"},{"id":"187","span":{"begin":262,"end":267},"obj":"Gene"},{"id":"189","span":{"begin":340,"end":348},"obj":"Species"}],"attributes":[{"id":"A182","pred":"tao:has_database_id","subj":"182","obj":"Tax:694009"},{"id":"A183","pred":"tao:has_database_id","subj":"183","obj":"Tax:2697049"},{"id":"A186","pred":"tao:has_database_id","subj":"186","obj":"Gene:43740578"},{"id":"A187","pred":"tao:has_database_id","subj":"187","obj":"Gene:43740568"},{"id":"A189","pred":"tao:has_database_id","subj":"189","obj":"Tax:694009"},{"subj":"182","pred":"source","obj":"LitCovid-PubTator"},{"subj":"183","pred":"source","obj":"LitCovid-PubTator"},{"subj":"186","pred":"source","obj":"LitCovid-PubTator"},{"subj":"187","pred":"source","obj":"LitCovid-PubTator"},{"subj":"189","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#d193ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#93ecb7"},{"id":"LitCovid-PD-CLO","color":"#ec9c93"},{"id":"LitCovid-PD-CHEBI","color":"#93a3ec"},{"id":"LitCovid-sentences","color":"#bdec93"},{"id":"LitCovid-PubTator","color":"#ec93d7"}]}]}}