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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1707-1713 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 1912-1919 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T3 2052-2058 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 3977-3981 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T5 4032-4036 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T6 4748-4754 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T7 4766-4770 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T8 4775-4781 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T9 5312-5315 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 5368-5371 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T11 5383-5386 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12 5489-5493 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T13 5530-5533 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T14 5642-5645 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 6037-6042 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T16 6666-6670 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T17 7108-7112 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T18 7316-7320 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T19 7540-7544 Body_part denotes C; S http://purl.org/sig/ont/fma/fma284995
T20 8190-8193 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T21 8299-8302 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T22 8347-8351 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T23 8439-8443 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T24 8475-8479 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T25 8578-8581 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T26 9675-9681 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T27 10116-10122 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T28 10135-10142 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 10143-10147 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T30 10161-10168 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T31 10169-10173 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T32 10191-10198 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T33 10199-10203 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T34 10236-10239 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T35 10250-10253 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T36 10265-10269 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T37 10280-10287 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T38 10288-10292 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T39 10322-10328 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T40 10978-10989 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T41 11029-11039 Body_part denotes Nucleotide http://purl.org/sig/ont/fma/fma82740
T42 11318-11322 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T43 11404-11409 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T44 11498-11502 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T45 11659-11662 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 11760-11763 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T47 12054-12058 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T48 12068-12072 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T49 12410-12414 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T50 12420-12423 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 12469-12472 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T52 12523-12527 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T53 12754-12757 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T54 12815-12818 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T55 12897-12900 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T56 12907-12911 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T57 12951-12954 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T58 12964-12968 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T59 13007-13010 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T60 13017-13021 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T61 13084-13087 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T62 13106-13110 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T63 13172-13175 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T64 13192-13196 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T65 13209-13212 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T66 13240-13244 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T67 13402-13406 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520
T68 13664-13667 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T69 13875-13878 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T70 14211-14215 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T71 14418-14430 Body_part denotes RNA molecule http://purl.org/sig/ont/fma/fma84126
T72 14418-14421 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T73 14560-14563 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T74 14679-14682 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T75 15075-15078 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T76 15111-15114 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T77 15461-15465 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T78 16296-16300 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T79 16565-16568 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T80 16668-16671 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T81 16776-16780 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T82 16890-16896 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T83 17070-17074 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T84 17154-17158 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T85 18047-18053 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T86 18065-18068 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T87 18179-18182 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T88 18324-18330 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T89 18342-18345 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T90 18408-18411 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T91 18549-18555 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T92 18567-18570 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T93 18759-18763 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T94 20599-20605 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T95 20969-20975 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 21578-21581 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T97 21732-21735 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T98 21817-21820 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T99 22016-22020 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T100 24795-24798 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T101 24809-24813 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T102 25181-25183 Body_part denotes RM http://purl.org/sig/ont/fma/fma272989

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4748-4754 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T2 4766-4770 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T3 4775-4781 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T4 6037-6042 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 16890-16896 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T6 18047-18053 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 18324-18330 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T8 18549-18555 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 694-698 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T2 852-860 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 852-856 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 1480-1489 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 2023-2032 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T6 2154-2187 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 2189-2193 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 2266-2270 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 2914-2935 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T10 2926-2935 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 3865-3873 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 3865-3869 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 4866-4870 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 6824-6828 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T15 6965-6973 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 6965-6969 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 6982-6986 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 8197-8205 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 8197-8201 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 8569-8577 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 8569-8573 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 9027-9031 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T23 9067-9071 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 9166-9170 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 9928-9936 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 9928-9932 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 9972-9976 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 10068-10072 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 10352-10360 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 10352-10356 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 10446-10450 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 10585-10593 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 10585-10589 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 10744-10748 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 10866-10870 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 11214-11218 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 11354-11362 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 11354-11358 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 12729-12733 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 12934-12942 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 12934-12938 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 12990-12998 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 12990-12994 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 14491-14495 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 14551-14559 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 14551-14555 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 14779-14787 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T48 14779-14783 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 15102-15110 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 15102-15106 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T51 15137-15141 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T52 15308-15327 Disease denotes zoonotic infections http://purl.obolibrary.org/obo/MONDO_0025481
T53 15425-15429 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T54 15689-15693 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T55 17336-17353 Disease denotes Influenza A(H1N1) http://purl.obolibrary.org/obo/MONDO_0005460
T56 17366-17375 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T57 17391-17400 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T58 17422-17431 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T59 17446-17455 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T60 17470-17479 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T61 17776-17786 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T62 18833-18852 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T63 20738-20742 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 20866-20874 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 20866-20870 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 21723-21731 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T67 21723-21727 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T68 22453-22463 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T69 23749-23762 Disease denotes Viral Disease http://purl.obolibrary.org/obo/MONDO_0005108
T70 24994-24997 Disease denotes VMC http://purl.obolibrary.org/obo/MONDO_0018308
T71 25255-25257 Disease denotes AM http://purl.obolibrary.org/obo/MONDO_0020320
T72 25369-25371 Disease denotes TB http://purl.obolibrary.org/obo/MONDO_0018076
T73 25483-25486 Disease denotes MLS http://purl.obolibrary.org/obo/MONDO_0018945
T74 25810-25812 Disease denotes JE http://purl.obolibrary.org/obo/MONDO_0019209

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 170-171 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 216-221 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 405-408 http://purl.obolibrary.org/obo/PR_000001343 denotes Aim
T4 530-535 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 581-582 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1008-1009 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1027-1032 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T8 1045-1052 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T9 1106-1111 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T10 1137-1138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1406-1418 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T12 1567-1568 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13 1699-1700 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T14 2089-2090 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2091-2096 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 2131-2132 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2208-2209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2274-2280 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T19 2315-2316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2333-2340 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T21 2372-2376 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T22 2445-2450 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T23 2650-2655 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 2659-2664 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T25 2770-2775 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T26 2779-2784 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T27 2982-2989 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T28 3264-3268 http://purl.obolibrary.org/obo/CLO_0001442 denotes 6-12
T29 3299-3304 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 3451-3456 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 3633-3634 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 3739-3744 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 3977-3981 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T34 4032-4036 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T35 4111-4118 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T36 4298-4304 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T37 4555-4557 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T38 4766-4770 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T39 4854-4857 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T40 4938-4944 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T41 4994-4997 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T42 5052-5055 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T43 5107-5109 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T44 5110-5113 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T45 5169-5172 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T46 5228-5231 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T47 5288-5291 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T48 5489-5493 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T49 5607-5608 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 5954-5955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 6213-6219 http://purl.obolibrary.org/obo/CLO_0001929 denotes Berlin
T52 6345-6347 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T53 6482-6493 http://purl.obolibrary.org/obo/OBI_0000968 denotes instruments
T54 6666-6670 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T55 6745-6747 http://purl.obolibrary.org/obo/CLO_0008307 denotes P2
T56 6870-6872 http://purl.obolibrary.org/obo/CLO_0008285 denotes P1
T57 6884-6886 http://purl.obolibrary.org/obo/CLO_0008285 denotes P1
T58 6924-6927 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T59 6978-6981 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T60 7037-7039 http://purl.obolibrary.org/obo/CLO_0008307 denotes P2
T61 7108-7112 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T62 7316-7320 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T63 7511-7512 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 7518-7519 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T65 7530-7531 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T66 7538-7539 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 7606-7607 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T68 7717-7721 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T69 7786-7787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 7951-7956 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T71 8100-8106 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T72 8308-8309 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 8347-8351 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T74 8417-8424 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T75 8439-8443 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T76 8475-8479 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T77 8926-8931 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T78 9025-9026 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 9037-9042 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T80 9065-9066 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 9179-9184 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T82 9404-9405 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9530-9532 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T84 9957-9960 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T85 10143-10147 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T86 10152-10160 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T87 10169-10173 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T88 10199-10203 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T89 10265-10269 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T90 10288-10292 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T91 10635-10636 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 10711-10712 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 10729-10732 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T94 10733-10738 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T95 10769-10772 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T96 10879-10882 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T97 11249-11250 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 11318-11322 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T99 11399-11403 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T100 11399-11403 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T101 11404-11409 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T102 11475-11476 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 11498-11502 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T104 11728-11729 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 11863-11870 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T106 11979-11980 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T107 12054-12058 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T108 12068-12072 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T109 12322-12327 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T110 12410-12414 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T111 12523-12527 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T112 12669-12671 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T113 12669-12671 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T114 12902-12906 http://purl.obolibrary.org/obo/CLO_0051456 denotes A: E
T115 12907-12911 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T116 12956-12957 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T117 12964-12968 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T118 13017-13021 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T119 13106-13110 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T120 13367-13374 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T121 13521-13529 http://purl.obolibrary.org/obo/UBERON_0000033 denotes headings
T122 13521-13529 http://www.ebi.ac.uk/efo/EFO_0000964 denotes headings
T123 13549-13550 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 14167-14172 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T125 14211-14215 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T126 14579-14580 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 14745-14746 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 15007-15012 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T129 15044-15046 http://purl.obolibrary.org/obo/CLO_0008307 denotes P2
T130 15169-15173 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T131 15212-15213 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 15410-15413 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T133 15438-15445 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T134 15461-15465 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T135 15475-15479 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T136 15484-15487 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T137 15574-15579 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T138 15631-15635 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T139 15736-15743 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T140 15884-15891 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T141 15900-15906 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T142 15931-15938 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T143 16063-16070 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T144 16088-16094 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T145 16236-16242 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T146 16296-16300 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T147 16345-16350 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T148 16426-16432 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T149 16528-16533 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T150 16534-16540 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T151 16776-16780 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T152 16807-16813 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T153 16884-16889 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T154 16918-16924 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T155 16925-16932 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T156 16936-16941 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T157 16998-17003 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tests
T158 17025-17032 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T159 17037-17045 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T160 17070-17074 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T161 17154-17158 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T162 17204-17211 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T163 17232-17237 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T164 17313-17315 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T165 17346-17347 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T166 17376-17377 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T167 17401-17402 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T168 17414-17416 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T169 17432-17433 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 17441-17445 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T171 17456-17457 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T172 17480-17481 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T173 17506-17511 http://purl.obolibrary.org/obo/CLO_0001006 denotes 31 1
T174 17565-17570 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T175 17572-17573 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T176 17574-17575 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T177 17601-17606 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T178 17631-17636 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T179 17638-17640 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T180 17661-17666 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T181 17691-17696 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T182 17698-17700 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T183 17705-17710 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T184 17753-17758 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T185 17855-17856 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 17883-17890 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T187 17905-17910 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T188 17989-17990 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T189 18024-18029 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T190 18039-18046 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T191 18135-18140 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T192 18141-18147 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T193 18148-18158 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T194 18301-18306 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T195 18316-18323 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T196 18526-18531 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T197 18541-18548 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T198 18692-18698 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T199 18730-18737 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T200 18759-18763 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T201 18775-18781 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T202 18782-18783 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 19492-19497 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T204 19597-19604 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T205 19660-19664 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T206 19774-19781 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T207 19822-19827 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T208 19842-19847 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T209 19946-19951 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T210 19955-19956 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T211 19990-19994 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T212 20277-20282 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T213 20388-20389 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T214 20439-20444 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T215 20751-20758 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T216 20762-20768 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T217 20844-20849 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T218 21072-21073 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T219 21197-21202 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T220 21546-21551 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T221 21592-21595 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T222 21659-21664 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T223 21718-21720 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T224 21958-21963 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T225 22016-22020 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T226 22101-22108 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T227 22357-22364 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T228 22382-22383 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T229 22577-22589 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisation
T230 22675-22678 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T231 23020-23022 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T232 23023-23025 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T233 23793-23796 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T234 23971-23973 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T235 23971-23973 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T236 24024-24026 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T237 24024-24026 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T238 24377-24379 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T239 24377-24379 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T240 24500-24503 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T241 24567-24568 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T242 24809-24813 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T243 24875-24880 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T244 24912-24917 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T245 25720-25722 http://purl.obolibrary.org/obo/CLO_0003417 denotes GG

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 736-748 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T2 744-748 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T3 3909-3921 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T4 3917-3921 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T5 4555-4557 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T6 4659-4662 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T7 5671-5677 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T8 5867-5885 Chemical denotes magnesium sulphate http://purl.obolibrary.org/obo/CHEBI_32599
T9 5867-5876 Chemical denotes magnesium http://purl.obolibrary.org/obo/CHEBI_25107
T10 5877-5885 Chemical denotes sulphate http://purl.obolibrary.org/obo/CHEBI_16189
T11 5922-5929 Chemical denotes mixture http://purl.obolibrary.org/obo/CHEBI_60004
T12 5962-5980 Chemical denotes magnesium sulphate http://purl.obolibrary.org/obo/CHEBI_32599
T13 5962-5971 Chemical denotes magnesium http://purl.obolibrary.org/obo/CHEBI_25107
T14 5972-5980 Chemical denotes sulphate http://purl.obolibrary.org/obo/CHEBI_16189
T15 5981-5989 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T16 6071-6076 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T17 6150-6166 Chemical denotes oligonucleotides http://purl.obolibrary.org/obo/CHEBI_7754
T18 6435-6440 Chemical denotes Light http://purl.obolibrary.org/obo/CHEBI_30212
T19 6618-6633 Chemical denotes Oligonucleotide http://purl.obolibrary.org/obo/CHEBI_7754
T20 6745-6747 Chemical denotes P2 http://purl.obolibrary.org/obo/CHEBI_33472
T21 6870-6872 Chemical denotes P1 http://purl.obolibrary.org/obo/CHEBI_60949
T22 6884-6886 Chemical denotes P1 http://purl.obolibrary.org/obo/CHEBI_60949
T23 7037-7039 Chemical denotes P2 http://purl.obolibrary.org/obo/CHEBI_33472
T24 7558-7578 Chemical denotes 6-carboxyfluorescein http://purl.obolibrary.org/obo/CHEBI_39073
T25 7738-7746 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T26 7867-7878 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T27 8005-8020 Chemical denotes oligonucleotide http://purl.obolibrary.org/obo/CHEBI_7754
T28 8719-8724 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T29 10135-10142 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T30 10161-10168 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T31 10191-10198 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T32 10280-10287 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T33 10413-10428 Chemical denotes oligonucleotide http://purl.obolibrary.org/obo/CHEBI_7754
T34 10773-10775 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T35 10978-10989 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T36 11029-11039 Chemical denotes Nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T37 11082-11098 Chemical denotes oligonucleotides http://purl.obolibrary.org/obo/CHEBI_7754
T38 11611-11624 Chemical denotes nucleic acids http://purl.obolibrary.org/obo/CHEBI_33696
T39 11619-11624 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T40 12300-12308 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T41 12669-12671 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T42 13786-13801 Chemical denotes oligonucleotide http://purl.obolibrary.org/obo/CHEBI_7754
T43 14422-14430 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T44 14759-14764 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T45 14820-14825 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T46 15027-15032 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T47 15044-15046 Chemical denotes P2 http://purl.obolibrary.org/obo/CHEBI_33472
T48 15997-16013 Chemical denotes oligonucleotides http://purl.obolibrary.org/obo/CHEBI_7754
T49 16122-16127 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T50 16141-16153 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T51 16149-16153 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T52 16174-16190 Chemical denotes oligonucleotides http://purl.obolibrary.org/obo/CHEBI_7754
T53 17419-17421 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T54 17540-17542 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T55 17582-17584 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T56 17612-17614 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T57 17642-17644 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T58 17672-17674 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T59 17702-17704 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T60 17732-17734 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T61 17773-17775 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T62 17796-17798 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T63 17819-17821 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T64 17852-17854 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T65 19328-19331 Chemical denotes PHE http://purl.obolibrary.org/obo/CHEBI_28044
T66 20497-20509 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T67 20505-20509 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T68 20625-20631 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341
T69 21310-21318 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T70 21320-21336 Chemical denotes oligonucleotides http://purl.obolibrary.org/obo/CHEBI_7754
T71 21673-21681 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T72 23244-23246 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T73 23352-23354 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T74 23872-23874 Chemical denotes Lu http://purl.obolibrary.org/obo/CHEBI_33382
T75 23971-23973 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T76 24011-24013 Chemical denotes Na http://purl.obolibrary.org/obo/CHEBI_26708
T77 24024-24026 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T78 24204-24206 Chemical denotes Si http://purl.obolibrary.org/obo/CHEBI_27573
T79 24377-24379 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T80 24638-24641 Chemical denotes F-H http://purl.obolibrary.org/obo/CHEBI_73634
T81 24669-24672 Chemical denotes T-Y http://purl.obolibrary.org/obo/CHEBI_73667
T82 25143-25145 Chemical denotes MK http://purl.obolibrary.org/obo/CHEBI_74706
T83 25181-25183 Chemical denotes RM http://purl.obolibrary.org/obo/CHEBI_73817
T84 25682-25684 Chemical denotes LW http://purl.obolibrary.org/obo/CHEBI_73590
T85 25960-25962 Chemical denotes MP http://purl.obolibrary.org/obo/CHEBI_73612
T86 26036-26038 Chemical denotes HG http://purl.obolibrary.org/obo/CHEBI_1679|http://purl.obolibrary.org/obo/CHEBI_73930
T88 26209-26211 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3007-3017 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T2 4804-4819 http://purl.obolibrary.org/obo/GO_0046794 denotes viral transport
T3 4810-4819 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T4 5581-5602 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse-transcription
T5 5589-5602 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T6 5904-5917 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T7 5904-5917 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T8 6285-6306 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T9 6293-6306 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T10 6661-6665 http://purl.obolibrary.org/obo/GO_0003968 denotes RdRP
T11 12459-12463 http://purl.obolibrary.org/obo/GO_0003968 denotes RdRP
T12 15079-15089 http://purl.obolibrary.org/obo/GO_0006351 denotes transcript

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-67 Sentence denotes Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR
T2 69-77 Sentence denotes Abstract
T3 78-88 Sentence denotes Background
T4 89-403 Sentence denotes The ongoing outbreak of the recently emerged novel coronavirus (2019-nCoV) poses a challenge for public health laboratories as virus isolates are unavailable while there is growing evidence that the outbreak is more widespread than initially thought, and international spread through travellers does already occur.
T5 405-408 Sentence denotes Aim
T6 409-555 Sentence denotes We aimed to develop and deploy robust diagnostic methodology for use in public health laboratory settings without having virus material available.
T7 557-564 Sentence denotes Methods
T8 565-760 Sentence denotes Here we present a validated diagnostic workflow for 2019-nCoV, its design relying on close genetic relatedness of 2019-nCoV with SARS coronavirus, making use of synthetic nucleic acid technology.
T9 762-769 Sentence denotes Results
T10 770-861 Sentence denotes The workflow reliably detects 2019-nCoV, and further discriminates 2019-nCoV from SARS-CoV.
T11 862-1053 Sentence denotes Through coordination between academic and public laboratories, we confirmed assay exclusivity based on 297 original clinical specimens containing a full spectrum of human respiratory viruses.
T12 1054-1177 Sentence denotes Control material is made available through European Virus Archive – Global (EVAg), a European Union infrastructure project.
T13 1179-1189 Sentence denotes Conclusion
T14 1190-1361 Sentence denotes The present study demonstrates the enormous response capacity achieved through coordination of academic and public laboratories in national and European research networks.
T15 1363-1375 Sentence denotes Introduction
T16 1376-1566 Sentence denotes According to the World Health Organization (WHO), the WHO China Country Office was informed of cases of pneumonia of unknown aetiology in Wuhan City, Hubei Province, on 31 December 2019 [1].
T17 1567-1698 Sentence denotes A novel coronavirus currently termed 2019-nCoV was officially announced as the causative agent by Chinese authorities on 7 January.
T18 1699-2047 Sentence denotes A viral genome sequence was released for immediate public health support via the community online resource virological.org on 10 January (Wuhan-Hu-1, GenBank accession number MN908947 [2]), followed by four other genomes deposited on 12 January in the viral sequence database curated by the Global Initiative on Sharing All Influenza Data (GISAID).
T19 2048-2287 Sentence denotes The genome sequences suggest presence of a virus closely related to the members of a viral species termed severe acute respiratory syndrome (SARS)-related CoV, a species defined by the agent of the 2002/03 outbreak of SARS in humans [3,4].
T20 2288-2396 Sentence denotes The species also comprises a large number of viruses mostly detected in rhinolophid bats in Asia and Europe.
T21 2397-2487 Sentence denotes As at 20 January 2019, 282 laboratory-confirmed human cases have been notified to WHO [5].
T22 2488-2635 Sentence denotes Confirmed cases in travellers from Wuhan were announced on 13 and 17 January in Thailand as well as on 15 January in Japan and 19 January in Korea.
T23 2636-2798 Sentence denotes The extent of human-to-human transmission of 2019-nCoV is unclear at the time of writing of this report but there is evidence of some human-to-human transmission.
T24 2799-2904 Sentence denotes Among the foremost priorities to facilitate public health interventions is reliable laboratory diagnosis.
T25 2905-3018 Sentence denotes In acute respiratory infection, RT-PCR is routinely used to detect causative viruses from respiratory secretions.
T26 3019-3270 Sentence denotes We have previously demonstrated the feasibility of introducing robust detection technology based on real-time RT-PCR in public health laboratories during international health emergencies by coordination between public and academic laboratories [6-12].
T27 3271-3416 Sentence denotes In all of these situations, virus isolates were available as the primary substrate for establishing and controlling assays and assay performance.
T28 3417-3578 Sentence denotes In the present case of 2019-nCoV, virus isolates or samples from infected patients have so far not become available to the international public health community.
T29 3579-3784 Sentence denotes We report here on the establishment and validation of a diagnostic workflow for 2019-nCoV screening and specific confirmation, designed in absence of available virus isolates or original patient specimens.
T30 3785-3933 Sentence denotes Design and validation were enabled by the close genetic relatedness to the 2003 SARS-CoV, and aided by the use of synthetic nucleic acid technology.
T31 3935-3942 Sentence denotes Methods
T32 3944-4031 Sentence denotes Clinical samples and coronavirus cell culture supernatants for initial assay evaluation
T33 4032-4194 Sentence denotes Cell culture supernatants containing typed coronaviruses and other respiratory viruses were provided by Charité and University of Hong Kong research laboratories.
T34 4195-4464 Sentence denotes Respiratory samples were obtained during 2019 from patients hospitalised at Charité medical centre and tested by the NxTAG respiratory pathogen panel (Luminex, S´Hertogenbosch, The Netherlands) or in cases of MERS-CoV by the MERS-CoV upE assay as published before [10].
T35 4465-4708 Sentence denotes Additional samples were selected from biobanks at the Rijksinstituut voor Volksgezondheid en Milieu (RIVM), Bilthoven, at Erasmus University Medical Center, Rotterdam, at Public Health England (PHE), London, and at the University of Hong Kong.
T36 4709-4827 Sentence denotes Samples from all collections comprised sputum as well as nose and throat swabs with or without viral transport medium.
T37 4828-5297 Sentence denotes Faecal samples containing bat-derived SARS-related CoV samples (identified by GenBank accession numbers) were tested: KC633203, Betacoronavirus BtCoV/Rhi_eur/BB98–98/BGR/2008; KC633204, Betacoronavirus BtCoV/Rhi_eur/BB98–92/BGR/2008; KC633201, Betacoronavirus BtCoV/Rhi_bla/BB98–22/BGR/2008; GU190221 Betacoronavirus Bat coronavirus BR98–19/BGR/2008; GU190222 Betacoronavirus Bat coronavirus BM98–01/BGR/2008; GU190223, Betacoronavirus Bat coronavirus BM98–13/BGR/2008.
T38 5298-5366 Sentence denotes All synthetic RNA used in this study was photometrically quantified.
T39 5368-5382 Sentence denotes RNA extraction
T40 5383-5569 Sentence denotes RNA was extracted from clinical samples with the MagNA Pure 96 system (Roche, Penzberg, Germany) and from cell culture supernatants with the viral RNA mini kit (QIAGEN, Hilden, Germany).
T41 5571-5606 Sentence denotes Real-time reverse-transcription PCR
T42 5607-6059 Sentence denotes A 25 μL reaction contained 5 μL of RNA, 12.5 μL of 2 × reaction buffer provided with the Superscript III one step RT-PCR system with Platinum Taq Polymerase (Invitrogen, Darmstadt, Germany; containing 0.4 mM of each deoxyribont triphosphates (dNTP) and 3.2 mM magnesium sulphate), 1 μL of reverse transcriptase/Taq mixture from the kit, 0.4 μL of a 50 mM magnesium sulphate solution (Invitrogen), and 1 μg of nonacetylated bovine serum albumin (Roche).
T43 6060-6145 Sentence denotes Primer and probe sequences, as well as optimised concentrations are shown in Table 1.
T44 6146-6230 Sentence denotes All oligonucleotides were synthesised and provided by Tib-Molbiol (Berlin, Germany).
T45 6231-6389 Sentence denotes Thermal cycling was performed at 55 °C for 10 min for reverse transcription, followed by 95 °C for 3 min and then 45 cycles of 95 °C for 15 s, 58 °C for 30 s.
T46 6390-6533 Sentence denotes Participating laboratories used either Roche Light Cycler 480II or Applied Biosystems ViiA7 instruments (Applied Biosystems, Hong Kong, China).
T47 6534-6606 Sentence denotes Table 1 Primers and probes, real-time RT-PCR for 2019 novel coronavirus
T48 6607-6660 Sentence denotes Assay/use Oligonucleotide Sequencea Concentrationb
T49 6661-6733 Sentence denotes RdRP gene RdRp_SARSr-F GTGARATGGTCATGTGTGGCGG Use 600 nM per reaction
T50 6734-6872 Sentence denotes RdRp_SARSr-P2 FAM-CAGGTGGAACCTCATCAGGAGATGC-BBQ Specific for 2019-nCoV, will not detect SARS-CoV.Use 100 nM per reaction and mix with P1
T51 6873-7039 Sentence denotes RdRP_SARSr-P1 FAM-CCAGGTGGWACRTCATCMGGTGATGC-BBQ Pan Sarbeco-Probe will detect 2019-nCoV, SARS-CoV and bat-SARS-related CoVs.Use 100 nM per reaction and mix with P2
T52 7040-7105 Sentence denotes RdRp_SARSr-R CARATGTTAAASACACTATTAGCATA Use 800 nM per reaction
T53 7106-7178 Sentence denotes E gene E_Sarbeco_F ACAGGTACGTTAATAGTTAATAGCGT Use 400 nm per reaction
T54 7179-7252 Sentence denotes E_Sarbeco_P1 FAM-ACACTAGCCATCCTTACTGCGCTTCG-BBQ Use 200 nm per reaction
T55 7253-7313 Sentence denotes E_Sarbeco_R ATATTGCAGCAGTACGCACACA Use 400 nm per reaction
T56 7314-7379 Sentence denotes N gene N_Sarbeco_F CACATTGGCACCCGCAATC Use 600 nm per reaction
T57 7380-7451 Sentence denotes N_Sarbeco_P FAM-ACTTCCTCAAGGAACAACATTGCCA-BBQ Use 200 nm per reaction
T58 7452-7510 Sentence denotes N_Sarbeco_R GAGGAACGAGAAGAGGCTTG Use 800 nm per reaction
T59 7511-7552 Sentence denotes a W is A/T; R is G/A; M is A/C; S is G/C.
T60 7553-7557 Sentence denotes FAM:
T61 7558-7605 Sentence denotes 6-carboxyfluorescein; BBQ: blackberry quencher.
T62 7606-7844 Sentence denotes b Optimised concentrations are given in nanomol per litre (nM) based on the final reaction mix, e.g. 1.5 µL of a 10 µM primer stock solution per 25 µL total reaction volume yields a final concentration of 600 nM as indicated in the table.
T63 7846-7884 Sentence denotes Protocol options and application notes
T64 7885-8059 Sentence denotes Laboratories participating in the evaluation used the TaqMan Fast Virus 1-Step Master Mix (Thermo Fisher) with the same oligonucleotide concentrations and cycling conditions.
T65 8060-8134 Sentence denotes The QIAGEN One-Step RT-PCR Kit was also tested and found to be compatible.
T66 8135-8303 Sentence denotes The intended cross-reactivity of all assays with viral RNA of SARS-CoV allows us to use the assays without having to rely on external sources of specific 2019-nCoV RNA.
T67 8304-8450 Sentence denotes For a routine workflow, we recommend the E gene assay as the first-line screening tool, followed by confirmatory testing with the RdRp gene assay.
T68 8451-8624 Sentence denotes Application of the RdRp gene assay with dual colour technology can discriminate 2019-nCoV (both probes positive) from SARS-CoV RNA if the latter is used as positive control.
T69 8625-8725 Sentence denotes Alternatively, laboratories may choose to run the RdRp assay with only the 2019-nCoV-specific probe.
T70 8727-8744 Sentence denotes Ethical statement
T71 8745-8891 Sentence denotes The internal use of samples for diagnostic workflow optimisation was agreed under the medical ethical rules of each of the participating partners.
T72 8893-8900 Sentence denotes Results
T73 8901-9043 Sentence denotes Before public release of virus sequences from cases of 2019-nCoV, we relied on social media reports announcing detection of a SARS-like virus.
T74 9044-9112 Sentence denotes We thus assumed that a SARS-related CoV is involved in the outbreak.
T75 9113-9234 Sentence denotes We downloaded all complete and partial (if > 400 nt) SARS-related virus sequences available in GenBank by 1 January 2020.
T76 9235-9434 Sentence denotes The list (n = 729 entries) was manually checked and artificial sequences (laboratory-derived, synthetic, etc), as well as sequence duplicates were removed, resulting in a final list of 375 sequences.
T77 9435-9534 Sentence denotes These sequences were aligned and the alignment was used for assay design (Supplementary Figure S1).
T78 9535-9693 Sentence denotes Upon release of the first 2019-nCoV sequence at virological.org, three assays were selected based on how well they matched to the 2019-nCoV genome (Figure 1).
T79 9694-9874 Sentence denotes The alignment was complemented by additional sequences released independently on GISAID (https://www.gisaid.org), confirming the good matching of selected primers to all sequences.
T80 9875-10011 Sentence denotes Alignments of primer binding domains with 2019-nCoV, SARS-CoV as well as selected bat-associated SARS-related CoV are shown in Figure 2.
T81 10012-10122 Sentence denotes Figure 1 Relative positions of amplicon targets on the SARS coronavirus and the 2019 novel coronavirus genome
T82 10123-10293 Sentence denotes E: envelope protein gene; M: membrane protein gene; N: nucleocapsid protein gene; ORF: open reading frame; RdRp: RNA-dependent RNA polymerase gene; S: spike protein gene.
T83 10294-10380 Sentence denotes Numbers below amplicons are genome positions according to SARS-CoV, GenBank NC_004718.
T84 10381-10480 Sentence denotes Figure 2 Partial alignments of oligonucleotide binding regions, SARS-related coronaviruses (n = 9)
T85 10481-10682 Sentence denotes The panels show six available sequences of 2019-nCoV, aligned to the corresponding partial sequences of SARS-CoV strain Frankfurt 1, which can be used as a positive control for all three RT-PCR assays.
T86 10683-10952 Sentence denotes The alignment also contains a closely related bat virus (Bat SARS-related CoV isolate bat-SL-CoVZC45, GenBank accession number MG772933) as well as the most distant member within the SARS-related bat CoV clade, detected in Bulgaria (GenBank accession number NC_014470).
T87 10953-11028 Sentence denotes Dots represent identical nucleotides compared with the WH_Human_1 sequence.
T88 11029-11068 Sentence denotes Nucleotide substitutions are specified.
T89 11069-11123 Sentence denotes Blue arrows: oligonucleotides as specified in Table 1.
T90 11124-11185 Sentence denotes More comprehensive alignments can be found in the Supplement.
T91 11187-11238 Sentence denotes Assay sensitivity based on SARS coronavirus virions
T92 11239-11410 Sentence denotes To obtain a preliminary assessment of analytical sensitivity, we used purified cell culture supernatant containing SARS-CoV strain Frankfurt-1 virions grown on Vero cells.
T93 11411-11523 Sentence denotes The supernatant was ultrafiltered and thereby concentrated from a ca 20-fold volume of cell culture supernatant.
T94 11524-11663 Sentence denotes The concentration step simultaneously reduces the relative concentration of background nucleic acids such as not virion-packaged viral RNA.
T95 11664-11823 Sentence denotes The virion preparation was quantified by real-time RT-PCR using a specific in vitro-transcribed RNA quantification standard as described in Drosten et al. [8].
T96 11824-11982 Sentence denotes All assays were subjected to replicate testing in order to determine stochastic detection frequencies at each assay’s sensitivity end point (Figure 3A and B).
T97 11983-12157 Sentence denotes All assays were highly sensitive, with best results obtained for the E gene and RdRp gene assays (5.2 and 3.8 copies per reaction at 95% detection probability, respectively).
T98 12158-12210 Sentence denotes These two assays were chosen for further evaluation.
T99 12211-12415 Sentence denotes One of the laboratories participating in the external evaluation used other basic RT-PCR reagents (TaqMan Fast Virus 1-Step Master Mix) and repeated the sensitivity study, with equivalent results (E gene:
T100 12416-12448 Sentence denotes 3.2 RNA copies/reaction (95% CI:
T101 12449-12464 Sentence denotes 2.2–6.8); RdRP:
T102 12465-12497 Sentence denotes 3.7 RNA copies/reaction (95% CI:
T103 12498-12507 Sentence denotes 2.8–8.0).
T104 12508-12672 Sentence denotes Of note, the N gene assay also performed well but was not subjected to intensive further validation because it was slightly less sensitive (Supplementary Figure S2)
T105 12673-12818 Sentence denotes Figure 3 Determination of limits of detection based on SARS coronavirus genomic RNA and 2019 novel coronavirus-specific in vitro transcribed RNA
T106 12819-12901 Sentence denotes CI: confidence intervals; c/r: copies per reaction; IVT: in vitro-transcribed RNA.
T107 12902-12904 Sentence denotes A:
T108 12905-12955 Sentence denotes E gene assay, evaluated with SARS-CoV genomic RNA.
T109 12956-12958 Sentence denotes B:
T110 12959-13011 Sentence denotes RdRp gene assay evaluated with SARS-CoV genomic RNA.
T111 13012-13097 Sentence denotes C: E-gene assay, evaluated with 2019-nCoV-specific in vitro-transcribed RNA standard.
T112 13098-13100 Sentence denotes D:
T113 13101-13185 Sentence denotes RdRp gene assay evaluated with 2019-nCoV-specific in vitro-transcribed RNA standard.
T114 13186-13233 Sentence denotes The x-axis shows input RNA copies per reaction.
T115 13234-13466 Sentence denotes The y-axis shows positive results in all parallel reactions performed, squares are experimental data points resulting from replicate testing of given concentrations (x-axis) in parallels assays (eight replicate reactions per point).
T116 13467-13530 Sentence denotes Technical limits of detection are given in the panels headings.
T117 13531-13585 Sentence denotes The inner line is a probit curve (dose-response rule).
T118 13586-13620 Sentence denotes The outer dotted lines are 95% CI.
T119 13622-13720 Sentence denotes Sensitivity based on in vitro-transcribed RNA identical to 2019 novel coronavirus target sequences
T120 13721-14006 Sentence denotes Although both assays detected 2019-nCoV without polymorphisms at oligonucleotide binding sites (Figure 2), we additionally generated in vitro-transcribed RNA standards that exactly matched the sequence of 2019-nCoV for absolute quantification and studying the limit of detection (LOD).
T121 14007-14133 Sentence denotes Replicate reactions were done at concentrations around the detection end point determined in preliminary dilution experiments.
T122 14134-14287 Sentence denotes The resulting LOD from replicate tests was 3.9 copies per reaction for the E gene assay and 3.6 copies per reaction for the RdRp assay (Figure 3C and D).
T123 14288-14443 Sentence denotes These figures were close to the 95% hit rate of 2.9 copies per reaction, according to the Poisson distribution, expected when one RNA molecule is detected.
T124 14445-14521 Sentence denotes Discrimination of 2019 novel coronavirus from SARS coronavirus by RdRp assay
T125 14522-14858 Sentence denotes Following the rationale that SARS-CoV RNA can be used as a positive control for the entire laboratory procedure, thus obviating the need to handle 2019-nCoV RNA, we formulated the RdRp assay so that it contains two probes: a broad-range probe reacting with SARS-CoV and 2019-nCoV and an additional probe that reacts only with 2019-nCoV.
T126 14859-15013 Sentence denotes By limiting dilution experiments, we confirmed that both probes, whether used individually or in combination, provided the same LOD for each target virus.
T127 15014-15115 Sentence denotes The specific probe RdRP_SARSr-P2 detected only the 2019-nCoV RNA transcript but not the SARS-CoV RNA.
T128 15117-15173 Sentence denotes Detection range for SARS-related coronaviruses from bats
T129 15174-15368 Sentence denotes At present, the potential exposure to a common environmental source in early reported cases implicates the possibility of independent zoonotic infections with increased sequence variability [5].
T130 15369-15567 Sentence denotes To show that the assays can detect other bat-associated SARS-related viruses, we used the E gene assay to test six bat-derived faecal samples available from Drexler et al. [13] und Muth et al. [14].
T131 15568-15636 Sentence denotes These virus-positive samples stemmed from European rhinolophid bats.
T132 15637-15770 Sentence denotes Detection of these phylogenetic outliers within the SARS-related CoV clade suggests that all Asian viruses are likely to be detected.
T133 15771-15917 Sentence denotes This would, theoretically, ensure broad sensitivity even in case of multiple independent acquisitions of variant viruses from an animal reservoir.
T134 15919-15938 Sentence denotes Specificity testing
T135 15940-15958 Sentence denotes Chemical stability
T136 15959-16191 Sentence denotes To exclude non-specific reactivity of oligonucleotides among each other, causing artificial fluorescent signals, all assays were tested 120 times in parallel with water and no other nucleic acid except the provided oligonucleotides.
T137 16192-16252 Sentence denotes In none of these reactions was any positive signal detected.
T138 16254-16295 Sentence denotes Cross-reactivity with other coronaviruses
T139 16296-16476 Sentence denotes Cell culture supernatants containing all endemic human coronaviruses (HCoV)‑229E, ‑NL63, ‑OC43 and ‑HKU1 as well as MERS-CoV were tested in duplicate in all three assays (Table 2).
T140 16477-16558 Sentence denotes For the non-cultivable HCoV-HKU1, supernatant from human airway culture was used.
T141 16559-16733 Sentence denotes Viral RNA concentration in all samples was determined by specific real-time RT-PCRs and in vitro-transcribed RNA standards designed for absolute quantification of viral load.
T142 16734-16839 Sentence denotes Additional undiluted (but not quantified) cell culture supernatants were tested as summarised in Table 2.
T143 16840-16905 Sentence denotes These were additionally mixed into negative human sputum samples.
T144 16906-16988 Sentence denotes None of the tested viruses or virus preparations showed reactivity with any assay.
T145 16989-17175 Sentence denotes Table 2 Tests of known respiratory viruses and bacteria in clinical samples and cell culture preparations for cross-reactivity in 2019 novel coronavirus E and RdRp gene assays (n = 310)
T146 17176-17247 Sentence denotes Clinical samples with known viruses Clinical samplesa Virus isolatesb
T147 17248-17265 Sentence denotes HCoV-HKU1 14 1c
T148 17266-17283 Sentence denotes HCoV-OC43 16 2d
T149 17284-17301 Sentence denotes HCoV-NL63 14 1e
T150 17302-17319 Sentence denotes HCoV-229E 18 2f
T151 17320-17335 Sentence denotes MERS-CoV 5 1g
T152 17336-17365 Sentence denotes Influenza A(H1N1)pdm09 17 1
T153 17366-17390 Sentence denotes Influenza A(H3N2) 16 1
T154 17391-17421 Sentence denotes Influenza A (untyped) 11 NA
T155 17422-17445 Sentence denotes Influenza A(H5N1) 1 1
T156 17446-17469 Sentence denotes Influenza A(H7N9) 0 1
T157 17470-17511 Sentence denotes Influenza B (Victoria or Yamagata) 31 1
T158 17512-17542 Sentence denotes Rhinovirus/enterovirus 31 NA
T159 17543-17584 Sentence denotes Respiratory syncytial virus (A/B) 33 NA
T160 17585-17614 Sentence denotes Parainfluenza 1 virus 12 NA
T161 17615-17644 Sentence denotes Parainfluenza 2 virus 11 NA
T162 17645-17674 Sentence denotes Parainfluenza 3 virus 14 NA
T163 17675-17704 Sentence denotes Parainfluenza 4 virus 11 NA
T164 17705-17734 Sentence denotes Human metapneumovirus 16 NA
T165 17735-17752 Sentence denotes Adenovirus 13 1
T166 17753-17775 Sentence denotes Human bocavirus 6 NA
T167 17776-17791 Sentence denotes Legionella spp.
T168 17793-17798 Sentence denotes 3 NA
T169 17799-17814 Sentence denotes Mycoplasma spp.
T170 17816-17821 Sentence denotes 4 NA
T171 17822-17854 Sentence denotes Total clinical samples 297 NA
T172 17855-17988 Sentence denotes a For samples with multiple viruses detected, the virus with highest concentration is listed, as indicated by real-time PCR Ct value.
T173 17989-18054 Sentence denotes b Directly quantified or spiked in human negative-testing sputum.
T174 18055-18120 Sentence denotes c 1 × 105 RNA copies/mL, determined by specific real-time RT-PCR.
T175 18121-18167 Sentence denotes Isolated from human airway epithelial culture.
T176 18168-18249 Sentence denotes d 1 × 1010 RNA copies/mL, determined by specific real-time RT-PCR of one isolate.
T177 18250-18331 Sentence denotes The other isolate was not quantified but spiked in human negative-testing sputum.
T178 18332-18397 Sentence denotes e 4 × 109 RNA copies/mL, determined by specific real-time RT-PCR.
T179 18398-18478 Sentence denotes f 3 × 109 RNA copies/mL, determined by specific real-time RT-PCR of one isolate.
T180 18479-18556 Sentence denotes The other isolate was not quantified spiked in human negative-testing sputum.
T181 18557-18622 Sentence denotes g 1 × 108 RNA copies/mL, determined by specific real-time RT-PCR.
T182 18624-18737 Sentence denotes Exclusivity of 2019 novel coronavirus based on clinical samples pre-tested positive for other respiratory viruses
T183 18738-18999 Sentence denotes Using the E and RdRp gene assays, we tested a total of 297 clinical samples from patients with respiratory disease from the biobanks of five laboratories that provide diagnostic services (one in Germany, two in the Netherlands, one in Hong Kong, one in the UK).
T184 19000-19214 Sentence denotes We selected 198 samples from three university medical centres where patients from general and intensive care wards as well as mainly paediatric outpatient departments are seen (Germany, the Netherlands, Hong Kong).
T185 19215-19381 Sentence denotes The remaining samples were contributed by national public health services performing surveillance studies (RIVM, PHE), with samples mainly submitted by practitioners.
T186 19382-19581 Sentence denotes The samples contained the broadest range of respiratory agents possible and reflected the general spectrum of virus concentrations encountered in diagnostic laboratories in these countries (Table 2).
T187 19582-19640 Sentence denotes In total, this testing yielded no false positive outcomes.
T188 19641-19767 Sentence denotes In four individual test reactions, weak initial reactivity was seen but they were negative upon retesting with the same assay.
T189 19768-20004 Sentence denotes These signals were not associated with any particular virus, and for each virus with which initial positive reactivity occurred, there were other samples that contained the same virus at a higher concentration but did not test positive.
T190 20005-20325 Sentence denotes Given the results from the extensive technical qualification described above, it was concluded that this initial reactivity was not due to chemical instability of real-time PCR probes but most probably to handling issues caused by the rapid introduction of new diagnostic tests and controls during this evaluation study.
T191 20327-20337 Sentence denotes Discussion
T192 20338-20510 Sentence denotes The present report describes the establishment of a diagnostic workflow for detection of an emerging virus in the absence of physical sources of viral genomic nucleic acid.
T193 20511-20780 Sentence denotes Effective assay design was enabled by the willingness of scientists from China to share genome information before formal publication, as well as the availability of broad sequence knowledge from ca 15 years of investigation of SARS-related viruses in animal reservoirs.
T194 20781-20996 Sentence denotes The relative ease with which assays could be designed for this virus, in contrast to SARS-CoV in 2003, proves the huge collective value of descriptive studies of disease ecology and viral genome diversity [8,15-17].
T195 20997-21056 Sentence denotes Real-time RT-PCR is widely deployed in diagnostic virology.
T196 21057-21279 Sentence denotes In the case of a public health emergency, proficient diagnostic laboratories can rely on this robust technology to establish new diagnostic tests within their routine services before pre-formulated assays become available.
T197 21280-21552 Sentence denotes In addition to information on reagents, oligonucleotides and positive controls, laboratories working under quality control programmes need to rely on documentation of technical qualification of the assay formulation as well as data from external clinical evaluation tests.
T198 21553-21722 Sentence denotes The provision of control RNA templates has been effectively implemented by the EVAg project that provides virus-related reagents from academic research collections [18].
T199 21723-21977 Sentence denotes SARS-CoV RNA was retrievable from EVAg before the present outbreak; specific products such as RNA transcripts for the here-described assays were first retrievable from the EVAg online catalogue on 14 January 2020 (https://www.european-virus-archive.com).
T200 21978-22234 Sentence denotes Technical qualification data based on cell culture materials and synthetic constructs, as well as results from exclusivity testing on 75 clinical samples, were included in the first version of the diagnostic protocol provided to the WHO on 13 January 2020.
T201 22235-22464 Sentence denotes Based on efficient collaboration in an informal network of laboratories, these data were augmented within 1 week comprise testing results based on a wide range of respiratory pathogens in clinical samples from natural infections.
T202 22465-22685 Sentence denotes Comparable evaluation studies during regulatory qualification of in vitro diagnostic assays can take months for organisation, legal implementation and logistics and typically come after the peak of an outbreak has waned.
T203 22686-23027 Sentence denotes The speed and effectiveness of the present deployment and evaluation effort were enabled by national and European research networks established in response to international health crises in recent years, demonstrating the enormous response capacity that can be released through coordinated action of academic and public laboratories [18-22].
T204 23028-23186 Sentence denotes This laboratory capacity not only supports immediate public health interventions but enables sites to enrol patients during rapid clinical research responses.
T205 23188-23204 Sentence denotes Acknowledgements
T206 23205-23488 Sentence denotes This work was funded by European Union DG Research through projects Prepare (GA602525), Compare (GA643476), and EVAg (GA653316); by European Union DG SANCO through EVD-LabNet, as well as by the German Ministry of Research through projects RAPID (01KI1723A) and DZIF (301-4-7-01.703).
T207 23489-23659 Sentence denotes We gratefully acknowledge the authors, the originating and submitting laboratories for their sequence and metadata shared through GISAID, on which this research is based.
T208 23660-23725 Sentence denotes All authors of data may be contacted directly via www.gisaid.org:
T209 23726-24058 Sentence denotes National Institute for Viral Disease Control and Prevention, China CDC (Wenjie Tan, Xiang Zhao, Wenling Wang, Xuejun Ma, Yongzhong Jiang, Roujian Lu, Ji Wang, Weimin Zhou, Peihua Niu, Peipei Liu,Faxian Zhan, Weifeng Shi, Baoying Huang, Jun Liu, Li Zhao, Yao Meng, Xiaozhou He, Fei Ye, Na Zhu, Yang Li, Jing Chen, Wenbo Xu, George F.
T210 24059-24673 Sentence denotes Gao, Guizhen Wu); Wuhan Institute of Virology, Chinese Academy of Sciences (Peng Zhou, Xing-Lou Yang, Ding-Yu Zhang, Lei Zhang, Yan Zhu, Hao-Rui Si, Zhengli Shi); Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College (Lili Ren, Jianwei Wang, Qi Jin, Zichun Xiang, Yongjun Li, Zhiqiang Wu, Chao Wu, Yiwei Liu); and National Institute for Communicable Disease Control and Prevention (ICDC), China CDC (Zhang Y-Z, Wu, F, Chen Y-M, Pei Y-Y, Xu L, Wang W, Zhao S, Yu B, Hu Y, Tao Z-W, Song Z-G, Tian J-H, Zhang Y-L, Liu Y, Zheng J-J, Dai F-H, Wang Q-M, She J-L and Zhu T-Y)
T211 24674-24765 Sentence denotes We thank Marta Zuchowski, Sigrid Kersten, and Joerg Hofmann for help with sample logistics.
T212 24766-24850 Sentence denotes In vitro-transcribed control RNA for the E gene assay can be acquired from author C.
T213 24851-24931 Sentence denotes D. through the European Virus Archive platform (www.european-virus-archive.com),
T214 24933-24954 Sentence denotes Conflict of interest:
T215 24955-24969 Sentence denotes None declared.
T216 24970-24998 Sentence denotes Authors’ contributions: VMC:
T217 24999-25068 Sentence denotes Planned and conducted experiments, conceptualised the laboratory work
T218 25069-25072 Sentence denotes OL:
T219 25073-25142 Sentence denotes Planned and conducted experiments, conceptualised the laboratory work
T220 25143-25146 Sentence denotes MK:
T221 25147-25180 Sentence denotes Planned and conducted experiments
T222 25181-25184 Sentence denotes RM:
T223 25185-25254 Sentence denotes Planned and conducted experiments, conceptualised the laboratory work
T224 25255-25258 Sentence denotes AM:
T225 25259-25328 Sentence denotes Planned and conducted experiments, conceptualised the laboratory work
T226 25329-25334 Sentence denotes DKWC:
T227 25335-25368 Sentence denotes Planned and conducted experiments
T228 25369-25372 Sentence denotes TB:
T229 25373-25406 Sentence denotes Planned and conducted experiments
T230 25407-25410 Sentence denotes SB:
T231 25411-25444 Sentence denotes Planned and conducted experiments
T232 25445-25448 Sentence denotes JS:
T233 25449-25482 Sentence denotes Planned and conducted experiments
T234 25483-25487 Sentence denotes MLS:
T235 25488-25521 Sentence denotes Planned and conducted experiments
T236 25522-25528 Sentence denotes DGJCM:
T237 25529-25562 Sentence denotes Planned and conducted experiments
T238 25563-25567 Sentence denotes BLH:
T239 25568-25601 Sentence denotes Planned and conducted experiments
T240 25602-25607 Sentence denotes BvdV:
T241 25608-25641 Sentence denotes Planned and conducted experiments
T242 25642-25647 Sentence denotes SvdB:
T243 25648-25681 Sentence denotes Planned and conducted experiments
T244 25682-25685 Sentence denotes LW:
T245 25686-25719 Sentence denotes Planned and conducted experiments
T246 25720-25723 Sentence denotes GG:
T247 25724-25757 Sentence denotes Planned and conducted experiments
T248 25758-25762 Sentence denotes JLR:
T249 25763-25809 Sentence denotes Contributed to overall study conceptualization
T250 25810-25813 Sentence denotes JE:
T251 25814-25883 Sentence denotes Planned and conducted experiments, conceptualised the laboratory work
T252 25884-25887 Sentence denotes MZ:
T253 25888-25959 Sentence denotes Planned laboratory work, contributed to overall study conceptualization
T254 25960-25963 Sentence denotes MP:
T255 25964-26035 Sentence denotes Planned laboratory work, contributed to overall study conceptualization
T256 26036-26039 Sentence denotes HG:
T257 26040-26086 Sentence denotes Contributed to overall study conceptualization
T258 26087-26090 Sentence denotes CR:
T259 26091-26146 Sentence denotes Planned experiments, conceptualised the laboratory work
T260 26147-26152 Sentence denotes MPGK:
T261 26153-26208 Sentence denotes Planned experiments, conceptualised the laboratory work
T262 26209-26212 Sentence denotes CD:
T263 26213-26331 Sentence denotes Planned experiments, conceptualised the laboratory work, conceptualised the overall study, wrote the manuscript draft.
T264 26333-26351 Sentence denotes Supplementary Data
T265 26352-26362 Sentence denotes Supplement
T266 26363-26399 Sentence denotes Click here for additional data file.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1480-1489 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2914-2935 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T3 11999-12015 Phenotype denotes highly sensitive http://purl.obolibrary.org/obo/HP_0041092

2_test

Id Subject Object Predicate Lexical cue
31992387-14681510-29325737 2284-2285 14681510 denotes 4
31992387-12736651-29325738 3264-3265 12736651 denotes 6
31992387-23231891-29325738 3264-3265 23231891 denotes 6
31992387-12690091-29325738 3264-3265 12690091 denotes 6
31992387-23611031-29325738 3264-3265 23611031 denotes 6
31992387-23041020-29325738 3264-3265 23041020 denotes 6
31992387-19239767-29325738 3264-3265 19239767 denotes 6
31992387-27994281-29325738 3264-3265 27994281 denotes 6
31992387-23041020-29325739 4460-4462 23041020 denotes 10
31992387-12690091-29325740 11820-11821 12690091 denotes 8
31992387-20686038-29325741 15542-15544 20686038 denotes 13
31992387-30310104-29325742 15563-15565 30310104 denotes 14
31992387-12690091-29325743 20987-20988 12690091 denotes 8
31992387-29551135-29325744 20989-20991 29551135 denotes 15
31992387-24184128-29325744 20989-20991 24184128 denotes 15
31992387-30531947-29325744 20989-20991 30531947 denotes 15
31992387-30059721-29325745 21718-21720 30059721 denotes 18
31992387-30059721-29325746 23020-23022 30059721 denotes 18
31992387-28926006-29325746 23020-23022 28926006 denotes 18
31992387-30017021-29325746 23020-23022 30017021 denotes 18
31992387-26209385-29325746 23020-23022 26209385 denotes 18
31992387-31123684-29325746 23020-23022 31123684 denotes 18

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 13-35 Species denotes 2019 novel coronavirus Tax:2697049
3 37-46 Species denotes 2019-nCoV Tax:2697049
6 134-151 Species denotes novel coronavirus Tax:2697049
7 153-162 Species denotes 2019-nCoV Tax:2697049
12 617-626 Species denotes 2019-nCoV Tax:2697049
13 679-688 Species denotes 2019-nCoV Tax:2697049
14 694-710 Species denotes SARS coronavirus Tax:694009
15 726-735 Species denotes synthetic Tax:2086595
21 800-809 Species denotes 2019-nCoV Tax:2697049
22 837-846 Species denotes 2019-nCoV Tax:2697049
23 852-860 Species denotes SARS-CoV Tax:694009
24 1027-1032 Species denotes human Tax:9606
25 1033-1044 Species denotes respiratory Tax:1439707
33 1569-1586 Species denotes novel coronavirus Tax:2697049
34 1604-1613 Species denotes 2019-nCoV Tax:2697049
35 2189-2206 Species denotes SARS)-related CoV Tax:694009
36 2274-2280 Species denotes humans Tax:9606
37 1480-1489 Disease denotes pneumonia MESH:D011014
38 2161-2187 Disease denotes acute respiratory syndrome MESH:D012120
39 1874-1882 CellLine denotes MN908947 CVCL:U508
46 2445-2450 Species denotes human Tax:9606
47 2650-2655 Species denotes human Tax:9606
48 2659-2664 Species denotes human Tax:9606
49 2681-2690 Species denotes 2019-nCoV Tax:2697049
50 2770-2775 Species denotes human Tax:9606
51 2779-2784 Species denotes human Tax:9606
54 2995-3006 Species denotes respiratory Tax:1439707
55 2914-2935 Disease denotes respiratory infection MESH:D012141
63 3440-3449 Species denotes 2019-nCoV Tax:2697049
64 3491-3499 Species denotes patients Tax:9606
65 3659-3668 Species denotes 2019-nCoV Tax:2697049
66 3766-3773 Species denotes patient Tax:9606
67 3865-3873 Species denotes SARS-CoV Tax:694009
68 3899-3908 Species denotes synthetic Tax:2086595
69 3482-3490 Disease denotes infected MESH:D007239
71 3965-3976 Species denotes coronavirus Tax:11118
80 4075-4088 Species denotes coronaviruses Tax:11118
81 4246-4254 Species denotes patients Tax:9606
82 4404-4412 Species denotes MERS-CoV Tax:1335626
83 4420-4428 Species denotes MERS-CoV Tax:1335626
84 4099-4110 Species denotes respiratory Tax:1439707
85 4195-4206 Species denotes Respiratory Tax:1439707
86 4318-4329 Species denotes respiratory Tax:1439707
87 4519-4554 Disease denotes Rijksinstituut voor Volksgezondheid
98 4866-4882 Species denotes SARS-related CoV Tax:694009
99 4956-4971 Species denotes Betacoronavirus Tax:694002
100 5014-5029 Species denotes Betacoronavirus Tax:694002
101 5072-5087 Species denotes Betacoronavirus Tax:694002
102 5129-5144 Species denotes Betacoronavirus Tax:694002
103 5145-5160 Species denotes Bat coronavirus Tax:1508220
104 5188-5203 Species denotes Betacoronavirus Tax:694002
105 5204-5236 Species denotes Bat coronavirus BM98–01/BGR/2008 Tax:864602
106 5248-5263 Species denotes Betacoronavirus Tax:694002
107 5264-5296 Species denotes Bat coronavirus BM98–13/BGR/2008 Tax:864605
109 5302-5315 Species denotes synthetic RNA Tax:2086595
111 5539-5542 Gene denotes kit Gene:3815
115 6037-6050 Gene denotes serum albumin Gene:213
116 5939-5942 Gene denotes kit Gene:3815
117 6150-6166 Chemical denotes oligonucleotides MESH:D009841
125 7028-7031 Gene denotes mix Gene:83881
126 6861-6864 Gene denotes mix Gene:83881
127 6797-6806 Species denotes 2019-nCoV Tax:2697049
128 6824-6832 Species denotes SARS-CoV Tax:694009
129 6954-6963 Species denotes 2019-nCoV Tax:2697049
130 6965-6973 Species denotes SARS-CoV Tax:694009
131 6982-6999 Species denotes SARS-related CoVs Tax:694009
133 6584-6606 Species denotes 2019 novel coronavirus Tax:2697049
135 7558-7578 Chemical denotes 6-carboxyfluorescein MESH:C024098
137 7697-7700 Gene denotes mix Gene:83881
141 7971-7974 Gene denotes Mix Gene:83881
142 8087-8090 Gene denotes Kit Gene:3815
143 8005-8020 Chemical denotes oligonucleotide MESH:D009841
146 8197-8205 Species denotes SARS-CoV Tax:694009
147 8289-8298 Species denotes 2019-nCoV Tax:2697049
154 8434-8438 Gene denotes RdRp Gene:43740578
155 8470-8474 Gene denotes RdRp Gene:43740578
156 8675-8679 Gene denotes RdRp Gene:43740578
157 8531-8540 Species denotes 2019-nCoV Tax:2697049
158 8569-8577 Species denotes SARS-CoV Tax:694009
159 8700-8709 Species denotes 2019-nCoV Tax:2697049
170 8956-8965 Species denotes 2019-nCoV Tax:2697049
171 9067-9083 Species denotes SARS-related CoV Tax:694009
172 9166-9184 Species denotes SARS-related virus Tax:694009
173 9287-9307 Species denotes artificial sequences Tax:81077
174 9561-9570 Species denotes 2019-nCoV Tax:2697049
175 9665-9674 Species denotes 2019-nCoV Tax:2697049
176 9917-9926 Species denotes 2019-nCoV Tax:2697049
177 9928-9936 Species denotes SARS-CoV Tax:694009
178 9972-9988 Species denotes SARS-related CoV Tax:694009
179 9329-9338 Species denotes synthetic Tax:2086595
182 10068-10084 Species denotes SARS coronavirus Tax:694009
183 10093-10115 Species denotes 2019 novel coronavirus Tax:2697049
186 10230-10234 Gene denotes RdRp Gene:43740578
187 10274-10279 Gene denotes spike Gene:43740568
189 10352-10360 Species denotes SARS-CoV Tax:694009
192 10446-10472 Species denotes SARS-related coronaviruses Tax:694009
193 10413-10428 Chemical denotes oligonucleotide MESH:D009841
199 10524-10533 Species denotes 2019-nCoV Tax:2697049
200 10585-10593 Species denotes SARS-CoV Tax:694009
201 10744-10760 Species denotes SARS-related CoV Tax:694009
202 10883-10886 Species denotes CoV Tax:11118
203 11082-11098 Chemical denotes oligonucleotides MESH:D009841
205 11214-11238 Disease denotes SARS coronavirus virions MESH:C000657245
210 12063-12067 Gene denotes RdRp Gene:43740578
211 12459-12463 Gene denotes RdRP Gene:43740578
212 12342-12345 Gene denotes Mix Gene:83881
213 11354-11362 Species denotes SARS-CoV Tax:694009
216 12729-12745 Species denotes SARS coronavirus Tax:694009
217 12762-12784 Species denotes 2019 novel coronavirus Tax:2697049
219 12845-12848 Gene denotes c/r
226 12959-12963 Gene denotes RdRp Gene:43740578
227 13101-13105 Gene denotes RdRp Gene:43740578
228 12934-12942 Species denotes SARS-CoV Tax:694009
229 12990-12998 Species denotes SARS-CoV Tax:694009
230 13044-13053 Species denotes 2019-nCoV Tax:2697049
231 13132-13141 Species denotes 2019-nCoV Tax:2697049
233 13681-13703 Species denotes 2019 novel coronavirus Tax:2697049
238 14258-14262 Gene denotes RdRp Gene:43740578
239 13751-13760 Species denotes 2019-nCoV Tax:2697049
240 13926-13935 Species denotes 2019-nCoV Tax:2697049
241 13786-13801 Chemical denotes oligonucleotide MESH:D009841
245 14511-14515 Gene denotes RdRp Gene:43740578
246 14463-14485 Species denotes 2019 novel coronavirus Tax:2697049
247 14491-14507 Species denotes SARS coronavirus Tax:694009
256 14702-14706 Gene denotes RdRp Gene:43740578
257 14551-14559 Species denotes SARS-CoV Tax:694009
258 14669-14678 Species denotes 2019-nCoV Tax:2697049
259 14779-14787 Species denotes SARS-CoV Tax:694009
260 14792-14801 Species denotes 2019-nCoV Tax:2697049
261 14848-14857 Species denotes 2019-nCoV Tax:2697049
262 15065-15074 Species denotes 2019-nCoV Tax:2697049
263 15102-15110 Species denotes SARS-CoV Tax:694009
265 15137-15163 Species denotes SARS-related coronaviruses Tax:694009
268 15689-15705 Species denotes SARS-related CoV Tax:694009
269 15308-15327 Disease denotes zoonotic infections MESH:D015047
274 16040-16050 Species denotes artificial Tax:81077
275 15997-16013 Chemical denotes oligonucleotides MESH:D009841
276 16122-16127 Chemical denotes water MESH:D014867
277 16174-16190 Chemical denotes oligonucleotides MESH:D009841
287 16385-16400 Gene denotes ‑OC43 and ‑HKU1
288 16345-16350 Species denotes human Tax:9606
289 16351-16364 Species denotes coronaviruses Tax:11118
290 16366-16376 Species denotes HCoV)‑229E Tax:11137
291 16412-16420 Species denotes MERS-CoV Tax:1335626
292 16500-16509 Species denotes HCoV-HKU1 Tax:290028
293 16528-16533 Species denotes human Tax:9606
294 16884-16889 Species denotes human Tax:9606
295 16379-16383 Species denotes NL63 Tax:277944
309 17248-17257 Species denotes HCoV-HKU1 Tax:290028
310 17266-17275 Species denotes HCoV-OC43 Tax:31631
311 17284-17293 Species denotes HCoV-NL63 Tax:277944
312 17302-17311 Species denotes HCoV-229E Tax:11137
313 17320-17328 Species denotes MERS-CoV Tax:1335626
314 17348-17352 Species denotes H1N1 Tax:114727
315 17378-17382 Species denotes H3N2 Tax:119210
316 17512-17522 Species denotes Rhinovirus Tax:12059
317 17543-17573 Species denotes Respiratory syncytial virus (A Tax:1439707
318 17705-17726 Species denotes Human metapneumovirus Tax:162145
319 17735-17745 Species denotes Adenovirus Tax:10508
320 17753-17768 Species denotes Human bocavirus Tax:329641
321 17458-17462 CellLine denotes H7N9 CVCL:0452
325 17149-17153 Gene denotes RdRp Gene:43740578
326 17120-17142 Species denotes 2019 novel coronavirus Tax:2697049
327 17013-17024 Species denotes respiratory Tax:1439707
329 18024-18029 Species denotes human Tax:9606
332 18076-18078 Gene denotes mL Gene:21832
333 18135-18140 Species denotes human Tax:9606
336 18190-18192 Gene denotes mL Gene:21832
337 18301-18306 Species denotes human Tax:9606
339 18353-18355 Gene denotes mL Gene:21832
342 18419-18421 Gene denotes mL Gene:21832
343 18526-18531 Species denotes human Tax:9606
345 18578-18580 Gene denotes mL Gene:21832
348 18639-18661 Species denotes 2019 novel coronavirus Tax:2697049
349 18718-18729 Species denotes respiratory Tax:1439707
356 18754-18758 Gene denotes RdRp Gene:43740578
357 18819-18827 Species denotes patients Tax:9606
358 19068-19076 Species denotes patients Tax:9606
359 19144-19154 Species denotes outpatient Tax:9606
360 19426-19437 Species denotes respiratory Tax:1439707
361 18833-18852 Disease denotes respiratory disease MESH:D012140
363 20866-20874 Species denotes SARS-CoV Tax:694009
370 21723-21731 Species denotes SARS-CoV Tax:694009
371 22043-22063 Species denotes synthetic constructs Tax:32630
372 23136-23144 Species denotes patients Tax:9606
373 22398-22409 Species denotes respiratory Tax:1439707
374 21320-21336 Chemical denotes oligonucleotides MESH:D009841
375 22453-22463 Disease denotes infections MESH:D007239
377 25602-25606 Species denotes BvdV Tax:11099

MyTest

Id Subject Object Predicate Lexical cue
31992387-14681510-29325737 2284-2285 14681510 denotes 4
31992387-12736651-29325738 3264-3265 12736651 denotes 6
31992387-23231891-29325738 3264-3265 23231891 denotes 6
31992387-12690091-29325738 3264-3265 12690091 denotes 6
31992387-23611031-29325738 3264-3265 23611031 denotes 6
31992387-23041020-29325738 3264-3265 23041020 denotes 6
31992387-19239767-29325738 3264-3265 19239767 denotes 6
31992387-27994281-29325738 3264-3265 27994281 denotes 6
31992387-23041020-29325739 4460-4462 23041020 denotes 10
31992387-12690091-29325740 11820-11821 12690091 denotes 8
31992387-20686038-29325741 15542-15544 20686038 denotes 13
31992387-30310104-29325742 15563-15565 30310104 denotes 14
31992387-12690091-29325743 20987-20988 12690091 denotes 8
31992387-29551135-29325744 20989-20991 29551135 denotes 15
31992387-24184128-29325744 20989-20991 24184128 denotes 15
31992387-30531947-29325744 20989-20991 30531947 denotes 15
31992387-30059721-29325745 21718-21720 30059721 denotes 18
31992387-30059721-29325746 23020-23022 30059721 denotes 18
31992387-28926006-29325746 23020-23022 28926006 denotes 18
31992387-30017021-29325746 23020-23022 30017021 denotes 18
31992387-26209385-29325746 23020-23022 26209385 denotes 18
31992387-31123684-29325746 23020-23022 31123684 denotes 18