PMC:6387395 / 15744-17168 JSONTXT

{"project":"2_test","denotations":[{"id":"30708960-19126699-51842951","span":{"begin":155,"end":157},"obj":"19126699"},{"id":"T7470","span":{"begin":155,"end":157},"obj":"19126699"}],"text":"2.9. TFs Involved in CGMMV Stress Response\nThe invasion of plant viruses induces the expression of a variety of genes, which are usually regulated by TFs [23]. In this study, we observed 85 TFs that were differentially expressed after CGMMV infection (Figure 6; Table S7). These TFs included MYB (18 genes), NAC (15 genes), zinc finger (14 genes), HLH (11 genes), BZIP (7 genes), WRKY (5 genes), MADS box (5 genes), WD-40 (4 genes), ERF (3 genes), GRAS (2 genes), and SBP-box (1 gene). The WRKY family members were mainly associated with the plant–pathogen interaction pathway. The GRAS and SBP-box members were mainly involved in the plant hormone signal transduction pathway. The MYB family members were mainly involved in the plant hormone signal transduction, plant–pathogen interaction, oxidative phosphorylation, and RNA transport pathways. The HLH and bZIP family members were mainly involved in the plant hormone signal transduction and protein processing in the endoplasmic reticulum pathways. The NAC family members were involved in RNA degradation and glycerolipid metabolic pathways. The MADS box family members were involved in the RNA transport and protein export pathways. The WD-40 genes were involved in the ubiquitin-mediated proteolysis and ribosome biogenesis in eukaryotes pathways. The zinc finger genes were involved in the galactose metabolism, circadian rhythm, RNA transport, and ribosome pathways."}

{"project":"CucurLitBase-testset_Gene","denotations":[{"id":"T14","span":{"begin":292,"end":295},"obj":"MYB"},{"id":"T15","span":{"begin":308,"end":311},"obj":"NAC"},{"id":"T16","span":{"begin":348,"end":351},"obj":"HLH"},{"id":"T17","span":{"begin":364,"end":368},"obj":"bZIP"},{"id":"T18","span":{"begin":380,"end":384},"obj":"WRKY"},{"id":"T19","span":{"begin":490,"end":494},"obj":"WRKY"},{"id":"T20","span":{"begin":682,"end":685},"obj":"MYB"},{"id":"T21","span":{"begin":851,"end":854},"obj":"HLH"},{"id":"T22","span":{"begin":859,"end":863},"obj":"bZIP"},{"id":"T23","span":{"begin":1007,"end":1010},"obj":"NAC"}],"text":"2.9. TFs Involved in CGMMV Stress Response\nThe invasion of plant viruses induces the expression of a variety of genes, which are usually regulated by TFs [23]. In this study, we observed 85 TFs that were differentially expressed after CGMMV infection (Figure 6; Table S7). These TFs included MYB (18 genes), NAC (15 genes), zinc finger (14 genes), HLH (11 genes), BZIP (7 genes), WRKY (5 genes), MADS box (5 genes), WD-40 (4 genes), ERF (3 genes), GRAS (2 genes), and SBP-box (1 gene). The WRKY family members were mainly associated with the plant–pathogen interaction pathway. The GRAS and SBP-box members were mainly involved in the plant hormone signal transduction pathway. The MYB family members were mainly involved in the plant hormone signal transduction, plant–pathogen interaction, oxidative phosphorylation, and RNA transport pathways. The HLH and bZIP family members were mainly involved in the plant hormone signal transduction and protein processing in the endoplasmic reticulum pathways. The NAC family members were involved in RNA degradation and glycerolipid metabolic pathways. The MADS box family members were involved in the RNA transport and protein export pathways. The WD-40 genes were involved in the ubiquitin-mediated proteolysis and ribosome biogenesis in eukaryotes pathways. The zinc finger genes were involved in the galactose metabolism, circadian rhythm, RNA transport, and ribosome pathways."}

{"project":"CucurLitBase-testset_BFT","denotations":[{"id":"T27","span":{"begin":27,"end":42},"obj":"BFT:3 stress response"},{"id":"T58","span":{"begin":292,"end":295},"obj":"MYB"},{"id":"T59","span":{"begin":308,"end":311},"obj":"NAC"},{"id":"T60","span":{"begin":348,"end":351},"obj":"HLH"},{"id":"T61","span":{"begin":364,"end":368},"obj":"bZIP"},{"id":"T62","span":{"begin":380,"end":384},"obj":"WRKY"},{"id":"T63","span":{"begin":490,"end":494},"obj":"WRKY"},{"id":"T64","span":{"begin":682,"end":685},"obj":"MYB"},{"id":"T65","span":{"begin":851,"end":854},"obj":"HLH"},{"id":"T66","span":{"begin":859,"end":863},"obj":"bZIP"},{"id":"T67","span":{"begin":1007,"end":1010},"obj":"NAC"}],"text":"2.9. TFs Involved in CGMMV Stress Response\nThe invasion of plant viruses induces the expression of a variety of genes, which are usually regulated by TFs [23]. In this study, we observed 85 TFs that were differentially expressed after CGMMV infection (Figure 6; Table S7). These TFs included MYB (18 genes), NAC (15 genes), zinc finger (14 genes), HLH (11 genes), BZIP (7 genes), WRKY (5 genes), MADS box (5 genes), WD-40 (4 genes), ERF (3 genes), GRAS (2 genes), and SBP-box (1 gene). The WRKY family members were mainly associated with the plant–pathogen interaction pathway. The GRAS and SBP-box members were mainly involved in the plant hormone signal transduction pathway. The MYB family members were mainly involved in the plant hormone signal transduction, plant–pathogen interaction, oxidative phosphorylation, and RNA transport pathways. The HLH and bZIP family members were mainly involved in the plant hormone signal transduction and protein processing in the endoplasmic reticulum pathways. The NAC family members were involved in RNA degradation and glycerolipid metabolic pathways. The MADS box family members were involved in the RNA transport and protein export pathways. The WD-40 genes were involved in the ubiquitin-mediated proteolysis and ribosome biogenesis in eukaryotes pathways. The zinc finger genes were involved in the galactose metabolism, circadian rhythm, RNA transport, and ribosome pathways."}