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PMC:549712 / 7903-9362 JSONTXT

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Id Subject Object Predicate Lexical cue
T2699 0-2 TO denotes To
T2700 3-14 VB denotes investigate
T2701 82-91 VBD denotes generated
T2702 15-17 FW denotes in
T2703 18-22 FW denotes vivo
T2704 23-26 DT denotes the
T2705 27-36 NNS denotes functions
T2706 37-39 IN denotes of
T2707 40-43 DT denotes the
T2708 63-71 NN denotes receptor
T2709 44-62 NN denotes phosphatidylserine
T2710 72-77 NN denotes Ptdsr
T2711 77-79 , denotes ,
T2712 79-81 PRP denotes we
T2713 92-93 DT denotes a
T2714 99-105 NN denotes allele
T2715 94-98 JJ denotes null
T2716 106-108 IN denotes in
T2717 109-112 DT denotes the
T2718 113-118 NN denotes mouse
T2719 119-121 IN denotes by
T2720 122-126 NN denotes gene
T2721 127-136 NN denotes targeting
T2722 137-138 -LRB- denotes (
T2723 151-153 NN denotes 1c
T2724 138-144 NN denotes Figure
T2725 145-147 NN denotes 1a
T2726 147-148 , denotes ,
T2727 148-150 NN denotes 1b
T2728 150-151 , denotes ,
T2729 153-154 -RRB- denotes )
T2730 154-155 . denotes .
T2731 155-371 sentence denotes In contrast to previously described Ptdsr-knockout mice [31,32], we used Bruce4 embryonic stem (ES) cells for gene targeting [33], thus generating a Ptdsr-null allele in a pure, isogenic C57BL/6J genetic background.
T2732 156-158 IN denotes In
T2733 224-228 VBD denotes used
T2734 159-167 NN denotes contrast
T2735 168-170 IN denotes to
T2736 171-181 RB denotes previously
T2737 182-191 VBN denotes described
T2738 207-211 NNS denotes mice
T2739 192-197 NN denotes Ptdsr
T2740 198-206 NN denotes knockout
T2741 197-198 HYPH denotes -
T2742 212-213 -LRB- denotes [
T2743 216-218 CD denotes 32
T2744 213-215 CD denotes 31
T2745 215-216 , denotes ,
T2746 218-219 -RRB- denotes ]
T2747 219-221 , denotes ,
T2748 221-223 PRP denotes we
T2749 229-235 NN denotes Bruce4
T2750 256-261 NNS denotes cells
T2751 236-245 JJ denotes embryonic
T2752 246-250 NN denotes stem
T2753 251-252 -LRB- denotes (
T2754 252-254 NN denotes ES
T2755 254-255 -RRB- denotes )
T2756 262-265 IN denotes for
T2757 266-270 NN denotes gene
T2758 271-280 NN denotes targeting
T2759 281-282 -LRB- denotes [
T2760 282-284 CD denotes 33
T2761 284-285 -RRB- denotes ]
T2762 285-287 , denotes ,
T2763 287-291 RB denotes thus
T2764 292-302 VBG denotes generating
T2765 303-304 DT denotes a
T2766 316-322 NN denotes allele
T2767 305-310 NN denotes Ptdsr
T2768 311-315 JJ denotes null
T2769 310-311 HYPH denotes -
T2770 323-325 IN denotes in
T2771 326-327 DT denotes a
T2772 360-370 NN denotes background
T2773 328-332 JJ denotes pure
T2774 332-334 , denotes ,
T2775 334-342 JJ denotes isogenic
T2776 343-348 NN denotes C57BL
T2777 349-351 NN denotes 6J
T2778 348-349 HYPH denotes /
T2779 352-359 JJ denotes genetic
T2780 370-371 . denotes .
T2781 371-473 sentence denotes The newly established knockout mouse line was named Ptdsrtm1Gbf (hereafter referred to as Ptdsr -/-).
T2782 372-375 DT denotes The
T2783 409-413 NN denotes line
T2784 376-381 RB denotes newly
T2785 382-393 VBN denotes established
T2786 394-402 NN denotes knockout
T2787 403-408 NN denotes mouse
T2788 418-423 VBN denotes named
T2789 414-417 VBD denotes was
T2790 424-435 NN denotes Ptdsrtm1Gbf
T2791 436-437 -LRB- denotes (
T2792 447-455 VBN denotes referred
T2793 437-446 RB denotes hereafter
T2794 456-458 IN denotes to
T2795 459-461 IN denotes as
T2796 462-467 NN denotes Ptdsr
T2797 468-469 SYM denotes -
T2798 469-470 HYPH denotes /
T2799 470-471 SYM denotes -
T2800 471-472 -RRB- denotes )
T2801 472-473 . denotes .
T2802 473-561 sentence denotes Heterozygous Ptdsr+/- mice were viable and fertile and showed no obvious abnormalities.
T2803 474-486 JJ denotes Heterozygous
T2804 496-500 NNS denotes mice
T2805 487-492 NN denotes Ptdsr
T2806 492-493 SYM denotes +
T2807 493-494 HYPH denotes /
T2808 494-495 SYM denotes -
T2809 501-505 VBD denotes were
T2810 506-512 JJ denotes viable
T2811 513-516 CC denotes and
T2812 517-524 JJ denotes fertile
T2813 525-528 CC denotes and
T2814 529-535 VBD denotes showed
T2815 536-538 DT denotes no
T2816 547-560 NNS denotes abnormalities
T2817 539-546 JJ denotes obvious
T2818 560-561 . denotes .
T2819 561-639 sentence denotes Ptdsr +/- mice were intercrossed to generate homozygous Ptdsr-deficient mice.
T2820 562-567 NN denotes Ptdsr
T2821 572-576 NNS denotes mice
T2822 568-569 SYM denotes +
T2823 569-570 HYPH denotes /
T2824 570-571 SYM denotes -
T2825 582-594 VBN denotes intercrossed
T2826 577-581 VBD denotes were
T2827 595-597 TO denotes to
T2828 598-606 VB denotes generate
T2829 607-617 JJ denotes homozygous
T2830 634-638 NNS denotes mice
T2831 618-623 NN denotes Ptdsr
T2832 624-633 JJ denotes deficient
T2833 623-624 HYPH denotes -
T2834 638-639 . denotes .
T2835 639-795 sentence denotes The absence of Ptdsr expression in Ptdsr -/- embryos was confirmed by RT-PCR (data not shown), and by northern and western blotting analyses (Figure 1d,e).
T2836 640-643 DT denotes The
T2837 644-651 NN denotes absence
T2838 697-706 VBN denotes confirmed
T2839 652-654 IN denotes of
T2840 655-660 NN denotes Ptdsr
T2841 661-671 NN denotes expression
T2842 672-674 IN denotes in
T2843 675-680 NN denotes Ptdsr
T2844 685-692 NNS denotes embryos
T2845 681-682 SYM denotes -
T2846 682-683 HYPH denotes /
T2847 683-684 SYM denotes -
T2848 693-696 VBD denotes was
T2849 707-709 IN denotes by
T2850 710-712 NN denotes RT
T2851 713-716 NN denotes PCR
T2852 712-713 HYPH denotes -
T2853 717-718 -LRB- denotes (
T2854 727-732 VBN denotes shown
T2855 718-722 NNS denotes data
T2856 723-726 RB denotes not
T2857 732-733 -RRB- denotes )
T2858 733-735 , denotes ,
T2859 735-738 CC denotes and
T2860 739-741 IN denotes by
T2861 742-750 NNP denotes northern
T2862 763-771 NN denotes blotting
T2863 751-754 CC denotes and
T2864 755-762 NNP denotes western
T2865 772-780 NNS denotes analyses
T2866 781-782 -LRB- denotes (
T2867 792-793 NN denotes e
T2868 782-788 NN denotes Figure
T2869 789-791 NN denotes 1d
T2870 791-792 , denotes ,
T2871 793-794 -RRB- denotes )
T2872 794-795 . denotes .
T2873 795-951 sentence denotes Interbreeding of heterozygous mice showed that the mutation was lethal, since homozygous mutants were not detected in over 100 analyzed litters at weaning.
T2874 796-809 NN denotes Interbreeding
T2875 831-837 VBD denotes showed
T2876 810-812 IN denotes of
T2877 813-825 JJ denotes heterozygous
T2878 826-830 NNS denotes mice
T2879 838-842 IN denotes that
T2880 856-859 VBD denotes was
T2881 843-846 DT denotes the
T2882 847-855 NN denotes mutation
T2883 860-866 JJ denotes lethal
T2884 866-868 , denotes ,
T2885 868-873 IN denotes since
T2886 902-910 VBN denotes detected
T2887 874-884 JJ denotes homozygous
T2888 885-892 NNS denotes mutants
T2889 893-897 VBD denotes were
T2890 898-901 RB denotes not
T2891 911-913 IN denotes in
T2892 914-918 IN denotes over
T2893 919-922 CD denotes 100
T2894 932-939 NNS denotes litters
T2895 923-931 VBN denotes analyzed
T2896 940-942 IN denotes at
T2897 943-950 NN denotes weaning
T2898 950-951 . denotes .
T2899 951-1110 sentence denotes To determine the stages of embryonic development affected by the Ptdsrtm1Gbf mutation, timed breedings were followed by PCR genotyping (Figure 1c) of embryos.
T2900 952-954 TO denotes To
T2901 955-964 VB denotes determine
T2902 1060-1068 VBN denotes followed
T2903 965-968 DT denotes the
T2904 969-975 NNS denotes stages
T2905 976-978 IN denotes of
T2906 979-988 JJ denotes embryonic
T2907 989-1000 NN denotes development
T2908 1001-1009 VBN denotes affected
T2909 1010-1012 IN denotes by
T2910 1013-1016 DT denotes the
T2911 1029-1037 NN denotes mutation
T2912 1017-1028 NN denotes Ptdsrtm1Gbf
T2913 1037-1039 , denotes ,
T2914 1039-1044 VBN denotes timed
T2915 1045-1054 NNS denotes breedings
T2916 1055-1059 VBD denotes were
T2917 1069-1071 IN denotes by
T2918 1072-1075 NN denotes PCR
T2919 1076-1086 NN denotes genotyping
T2920 1087-1088 -LRB- denotes (
T2921 1095-1097 NN denotes 1c
T2922 1088-1094 NN denotes Figure
T2923 1097-1098 -RRB- denotes )
T2924 1099-1101 IN denotes of
T2925 1102-1109 NNS denotes embryos
T2926 1109-1110 . denotes .
T2927 1110-1211 sentence denotes We recovered fewer than the expected number of homozygous embryos from intercrosses of Ptdsr+/-mice.
T2928 1111-1113 PRP denotes We
T2929 1114-1123 VBD denotes recovered
T2930 1124-1129 JJR denotes fewer
T2931 1130-1134 IN denotes than
T2932 1135-1138 DT denotes the
T2933 1148-1154 NN denotes number
T2934 1139-1147 VBN denotes expected
T2935 1155-1157 IN denotes of
T2936 1158-1168 JJ denotes homozygous
T2937 1169-1176 NNS denotes embryos
T2938 1177-1181 IN denotes from
T2939 1182-1194 NNS denotes intercrosses
T2940 1195-1197 IN denotes of
T2941 1198-1203 NN denotes Ptdsr
T2942 1206-1210 NNS denotes mice
T2943 1203-1204 SYM denotes +
T2944 1204-1205 HYPH denotes /
T2945 1205-1206 SYM denotes -
T2946 1210-1211 . denotes .
T2947 1211-1459 sentence denotes From a total of 1,031 embryos analyzed between gestational day (E) 9.5 and E18.5, 198 (19.2%) Ptdsr-deficient homozygous embryos were harvested, indicating that the introduced mutation is associated with a low rate of embryonic lethality in utero.
T2948 1212-1216 IN denotes From
T2949 1346-1355 VBN denotes harvested
T2950 1217-1218 DT denotes a
T2951 1219-1224 NN denotes total
T2952 1225-1227 IN denotes of
T2953 1228-1233 CD denotes 1,031
T2954 1234-1241 NNS denotes embryos
T2955 1242-1250 VBN denotes analyzed
T2956 1251-1258 IN denotes between
T2957 1259-1270 JJ denotes gestational
T2958 1276-1277 NN denotes E
T2959 1271-1274 NN denotes day
T2960 1275-1276 -LRB- denotes (
T2961 1277-1278 -RRB- denotes )
T2962 1279-1282 CD denotes 9.5
T2963 1283-1286 CC denotes and
T2964 1287-1292 NN denotes E18.5
T2965 1292-1294 , denotes ,
T2966 1294-1297 CD denotes 198
T2967 1333-1340 NNS denotes embryos
T2968 1298-1299 -LRB- denotes (
T2969 1303-1304 NN denotes %
T2970 1299-1303 CD denotes 19.2
T2971 1304-1305 -RRB- denotes )
T2972 1306-1311 NN denotes Ptdsr
T2973 1312-1321 JJ denotes deficient
T2974 1311-1312 HYPH denotes -
T2975 1322-1332 JJ denotes homozygous
T2976 1341-1345 VBD denotes were
T2977 1355-1357 , denotes ,
T2978 1357-1367 VBG denotes indicating
T2979 1368-1372 IN denotes that
T2980 1400-1410 VBN denotes associated
T2981 1373-1376 DT denotes the
T2982 1388-1396 NN denotes mutation
T2983 1377-1387 VBN denotes introduced
T2984 1397-1399 VBZ denotes is
T2985 1411-1415 IN denotes with
T2986 1416-1417 DT denotes a
T2987 1422-1426 NN denotes rate
T2988 1418-1421 JJ denotes low
T2989 1427-1429 IN denotes of
T2990 1430-1439 JJ denotes embryonic
T2991 1440-1449 NN denotes lethality
T2992 1450-1452 FW denotes in
T2993 1453-1458 FW denotes utero
T2994 1458-1459 . denotes .
R1349 T2699 T2700 aux To,investigate
R1350 T2700 T2701 advcl investigate,generated
R1351 T2702 T2703 advmod in,vivo
R1352 T2703 T2700 advmod vivo,investigate
R1353 T2704 T2705 det the,functions
R1354 T2705 T2700 dobj functions,investigate
R1355 T2706 T2705 prep of,functions
R1356 T2707 T2708 det the,receptor
R1357 T2708 T2706 pobj receptor,of
R1358 T2709 T2708 compound phosphatidylserine,receptor
R1359 T2710 T2708 appos Ptdsr,receptor
R1360 T2711 T2701 punct ", ",generated
R1361 T2712 T2701 nsubj we,generated
R1362 T2713 T2714 det a,allele
R1363 T2714 T2701 dobj allele,generated
R1364 T2715 T2714 amod null,allele
R1365 T2716 T2701 prep in,generated
R1366 T2717 T2718 det the,mouse
R1367 T2718 T2716 pobj mouse,in
R1368 T2719 T2701 prep by,generated
R1369 T2720 T2721 compound gene,targeting
R1370 T2721 T2719 pobj targeting,by
R1371 T2722 T2723 punct (,1c
R1372 T2723 T2701 parataxis 1c,generated
R1373 T2724 T2723 nmod Figure,1c
R1374 T2725 T2723 nmod 1a,1c
R1375 T2726 T2723 punct ",",1c
R1376 T2727 T2723 nmod 1b,1c
R1377 T2728 T2723 punct ",",1c
R1378 T2729 T2723 punct ),1c
R1379 T2730 T2701 punct .,generated
R1380 T2732 T2733 prep In,used
R1381 T2734 T2732 pobj contrast,In
R1382 T2735 T2734 prep to,contrast
R1383 T2736 T2737 advmod previously,described
R1384 T2737 T2738 amod described,mice
R1385 T2738 T2735 pobj mice,to
R1386 T2739 T2740 compound Ptdsr,knockout
R1387 T2740 T2738 compound knockout,mice
R1388 T2741 T2740 punct -,knockout
R1389 T2742 T2743 punct [,32
R1390 T2743 T2732 parataxis 32,In
R1391 T2744 T2743 nummod 31,32
R1392 T2745 T2743 punct ",",32
R1393 T2746 T2743 punct ],32
R1394 T2747 T2733 punct ", ",used
R1395 T2748 T2733 nsubj we,used
R1396 T2749 T2750 nmod Bruce4,cells
R1397 T2750 T2733 dobj cells,used
R1398 T2751 T2752 amod embryonic,stem
R1399 T2752 T2750 nmod stem,cells
R1400 T2753 T2752 punct (,stem
R1401 T2754 T2752 appos ES,stem
R1402 T2755 T2752 punct ),stem
R1403 T2756 T2733 prep for,used
R1404 T2757 T2758 compound gene,targeting
R1405 T2758 T2756 pobj targeting,for
R1406 T2759 T2760 punct [,33
R1407 T2760 T2733 parataxis 33,used
R1408 T2761 T2760 punct ],33
R1409 T2762 T2733 punct ", ",used
R1410 T2763 T2764 advmod thus,generating
R1411 T2764 T2733 advcl generating,used
R1412 T2765 T2766 det a,allele
R1413 T2766 T2764 dobj allele,generating
R1414 T2767 T2768 npadvmod Ptdsr,null
R1415 T2768 T2766 amod null,allele
R1416 T2769 T2768 punct -,null
R1417 T2770 T2764 prep in,generating
R1418 T2771 T2772 det a,background
R1419 T2772 T2770 pobj background,in
R1420 T2773 T2772 amod pure,background
R1421 T2774 T2772 punct ", ",background
R1422 T2775 T2772 amod isogenic,background
R1423 T2776 T2777 nmod C57BL,6J
R1424 T2777 T2772 nmod 6J,background
R1425 T2778 T2777 punct /,6J
R1426 T2779 T2772 amod genetic,background
R1427 T2780 T2733 punct .,used
R1428 T2782 T2783 det The,line
R1429 T2783 T2788 nsubjpass line,named
R1430 T2784 T2785 advmod newly,established
R1431 T2785 T2783 amod established,line
R1432 T2786 T2783 compound knockout,line
R1433 T2787 T2783 compound mouse,line
R1434 T2789 T2788 auxpass was,named
R1435 T2790 T2788 oprd Ptdsrtm1Gbf,named
R1436 T2791 T2792 punct (,referred
R1437 T2792 T2790 parataxis referred,Ptdsrtm1Gbf
R1438 T2793 T2792 advmod hereafter,referred
R1439 T2794 T2792 prep to,referred
R1440 T2795 T2792 prep as,referred
R1441 T2796 T2795 pobj Ptdsr,as
R1442 T2797 T2796 punct -,Ptdsr
R1443 T2798 T2796 punct /,Ptdsr
R1444 T2799 T2796 punct -,Ptdsr
R1445 T2800 T2792 punct ),referred
R1446 T2801 T2788 punct .,named
R1447 T2803 T2804 amod Heterozygous,mice
R1448 T2804 T2809 nsubj mice,were
R1449 T2805 T2804 nmod Ptdsr,mice
R1450 T2806 T2805 punct +,Ptdsr
R1451 T2807 T2805 punct /,Ptdsr
R1452 T2808 T2805 punct -,Ptdsr
R1453 T2810 T2809 acomp viable,were
R1454 T2811 T2810 cc and,viable
R1455 T2812 T2810 conj fertile,viable
R1456 T2813 T2809 cc and,were
R1457 T2814 T2809 conj showed,were
R1458 T2815 T2816 det no,abnormalities
R1459 T2816 T2814 dobj abnormalities,showed
R1460 T2817 T2816 amod obvious,abnormalities
R1461 T2818 T2809 punct .,were
R1462 T2820 T2821 nmod Ptdsr,mice
R1463 T2821 T2825 nsubjpass mice,intercrossed
R1464 T2822 T2820 punct +,Ptdsr
R1465 T2823 T2820 punct /,Ptdsr
R1466 T2824 T2820 punct -,Ptdsr
R1467 T2826 T2825 auxpass were,intercrossed
R1468 T2827 T2828 aux to,generate
R1469 T2828 T2825 advcl generate,intercrossed
R1470 T2829 T2830 amod homozygous,mice
R1471 T2830 T2828 dobj mice,generate
R1472 T2831 T2832 npadvmod Ptdsr,deficient
R1473 T2832 T2830 amod deficient,mice
R1474 T2833 T2832 punct -,deficient
R1475 T2834 T2825 punct .,intercrossed
R1476 T2836 T2837 det The,absence
R1477 T2837 T2838 nsubjpass absence,confirmed
R1478 T2839 T2837 prep of,absence
R1479 T2840 T2841 compound Ptdsr,expression
R1480 T2841 T2839 pobj expression,of
R1481 T2842 T2837 prep in,absence
R1482 T2843 T2844 nmod Ptdsr,embryos
R1483 T2844 T2842 pobj embryos,in
R1484 T2845 T2843 punct -,Ptdsr
R1485 T2846 T2843 punct /,Ptdsr
R1486 T2847 T2843 punct -,Ptdsr
R1487 T2848 T2838 auxpass was,confirmed
R1488 T2849 T2838 prep by,confirmed
R1489 T2850 T2851 compound RT,PCR
R1490 T2851 T2849 pobj PCR,by
R1491 T2852 T2851 punct -,PCR
R1492 T2853 T2854 punct (,shown
R1493 T2854 T2849 parataxis shown,by
R1494 T2855 T2854 nsubj data,shown
R1495 T2856 T2854 neg not,shown
R1496 T2857 T2854 punct ),shown
R1497 T2858 T2849 punct ", ",by
R1498 T2859 T2849 cc and,by
R1499 T2860 T2849 conj by,by
R1500 T2861 T2862 nmod northern,blotting
R1501 T2862 T2865 compound blotting,analyses
R1502 T2863 T2861 cc and,northern
R1503 T2864 T2861 conj western,northern
R1504 T2865 T2860 pobj analyses,by
R1505 T2866 T2867 punct (,e
R1506 T2867 T2838 parataxis e,confirmed
R1507 T2868 T2867 nmod Figure,e
R1508 T2869 T2867 nmod 1d,e
R1509 T2870 T2867 punct ",",e
R1510 T2871 T2867 punct ),e
R1511 T2872 T2838 punct .,confirmed
R1512 T2874 T2875 nsubj Interbreeding,showed
R1513 T2876 T2874 prep of,Interbreeding
R1514 T2877 T2878 amod heterozygous,mice
R1515 T2878 T2876 pobj mice,of
R1516 T2879 T2880 mark that,was
R1517 T2880 T2875 ccomp was,showed
R1518 T2881 T2882 det the,mutation
R1519 T2882 T2880 nsubj mutation,was
R1520 T2883 T2880 acomp lethal,was
R1521 T2884 T2880 punct ", ",was
R1522 T2885 T2886 mark since,detected
R1523 T2886 T2880 advcl detected,was
R1524 T2887 T2888 amod homozygous,mutants
R1525 T2888 T2886 nsubjpass mutants,detected
R1526 T2889 T2886 auxpass were,detected
R1527 T2890 T2886 neg not,detected
R1528 T2891 T2886 prep in,detected
R1529 T2892 T2893 quantmod over,100
R1530 T2893 T2894 nummod 100,litters
R1531 T2894 T2891 pobj litters,in
R1532 T2895 T2894 amod analyzed,litters
R1533 T2896 T2886 prep at,detected
R1534 T2897 T2896 pobj weaning,at
R1535 T2898 T2875 punct .,showed
R1536 T2900 T2901 aux To,determine
R1537 T2901 T2902 advcl determine,followed
R1538 T2903 T2904 det the,stages
R1539 T2904 T2901 dobj stages,determine
R1540 T2905 T2904 prep of,stages
R1541 T2906 T2907 amod embryonic,development
R1542 T2907 T2905 pobj development,of
R1543 T2908 T2907 acl affected,development
R1544 T2909 T2908 agent by,affected
R1545 T2910 T2911 det the,mutation
R1546 T2911 T2909 pobj mutation,by
R1547 T2912 T2911 compound Ptdsrtm1Gbf,mutation
R1548 T2913 T2902 punct ", ",followed
R1549 T2914 T2915 amod timed,breedings
R1550 T2915 T2902 nsubjpass breedings,followed
R1551 T2916 T2902 auxpass were,followed
R1552 T2917 T2902 prep by,followed
R1553 T2918 T2919 compound PCR,genotyping
R1554 T2919 T2917 pobj genotyping,by
R1555 T2920 T2921 punct (,1c
R1556 T2921 T2919 parataxis 1c,genotyping
R1557 T2922 T2921 compound Figure,1c
R1558 T2923 T2921 punct ),1c
R1559 T2924 T2919 prep of,genotyping
R1560 T2925 T2924 pobj embryos,of
R1561 T2926 T2902 punct .,followed
R1562 T2928 T2929 nsubj We,recovered
R1563 T2930 T2929 dobj fewer,recovered
R1564 T2931 T2930 prep than,fewer
R1565 T2932 T2933 det the,number
R1566 T2933 T2931 pobj number,than
R1567 T2934 T2933 amod expected,number
R1568 T2935 T2933 prep of,number
R1569 T2936 T2937 amod homozygous,embryos
R1570 T2937 T2935 pobj embryos,of
R1571 T2938 T2929 prep from,recovered
R1572 T2939 T2938 pobj intercrosses,from
R1573 T2940 T2939 prep of,intercrosses
R1574 T2941 T2942 nmod Ptdsr,mice
R1575 T2942 T2940 pobj mice,of
R1576 T2943 T2941 punct +,Ptdsr
R1577 T2944 T2941 punct /,Ptdsr
R1578 T2945 T2941 punct -,Ptdsr
R1579 T2946 T2929 punct .,recovered
R1580 T2948 T2949 prep From,harvested
R1581 T2950 T2951 det a,total
R1582 T2951 T2948 pobj total,From
R1583 T2952 T2951 prep of,total
R1584 T2953 T2954 nummod "1,031",embryos
R1585 T2954 T2952 pobj embryos,of
R1586 T2955 T2954 acl analyzed,embryos
R1587 T2956 T2955 prep between,analyzed
R1588 T2957 T2958 amod gestational,E
R1589 T2958 T2956 pobj E,between
R1590 T2959 T2958 nmod day,E
R1591 T2960 T2958 punct (,E
R1592 T2961 T2958 punct ),E
R1593 T2962 T2958 nummod 9.5,E
R1594 T2963 T2958 cc and,E
R1595 T2964 T2958 conj E18.5,E
R1596 T2965 T2949 punct ", ",harvested
R1597 T2966 T2967 nummod 198,embryos
R1598 T2967 T2949 nsubjpass embryos,harvested
R1599 T2968 T2969 punct (,%
R1600 T2969 T2966 parataxis %,198
R1601 T2970 T2969 nummod 19.2,%
R1602 T2971 T2969 punct ),%
R1603 T2972 T2973 npadvmod Ptdsr,deficient
R1604 T2973 T2967 amod deficient,embryos
R1605 T2974 T2973 punct -,deficient
R1606 T2975 T2967 amod homozygous,embryos
R1607 T2976 T2949 auxpass were,harvested
R1608 T2977 T2949 punct ", ",harvested
R1609 T2978 T2949 advcl indicating,harvested
R1610 T2979 T2980 mark that,associated
R1611 T2980 T2978 ccomp associated,indicating
R1612 T2981 T2982 det the,mutation
R1613 T2982 T2980 nsubjpass mutation,associated
R1614 T2983 T2982 amod introduced,mutation
R1615 T2984 T2980 auxpass is,associated
R1616 T2985 T2980 prep with,associated
R1617 T2986 T2987 det a,rate
R1618 T2987 T2985 pobj rate,with
R1619 T2988 T2987 amod low,rate
R1620 T2989 T2987 prep of,rate
R1621 T2990 T2991 amod embryonic,lethality
R1622 T2991 T2989 pobj lethality,of
R1623 T2992 T2993 advmod in,utero
R1624 T2993 T2991 advmod utero,lethality
R1625 T2994 T2949 punct .,harvested

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2573 44-62 CHEBI:18303 denotes phosphatidylserine
T2574 44-71 PR_EXT:000009218 denotes phosphatidylserine receptor
T2575 63-71 GO_EXT:0004872 denotes receptor
T2576 72-77 PR_EXT:000009218 denotes Ptdsr
T2577 94-98 SO_EXT:sequence_nullness denotes null
T2578 99-105 SO_EXT:0001023 denotes allele
T2579 113-118 NCBITaxon:10088 denotes mouse
T2580 122-126 SO_EXT:0000704 denotes gene
T2581 192-197 PR_EXT:000009218 denotes Ptdsr
T2582 207-211 NCBITaxon:10088 denotes mice
T2583 236-245 UBERON:0000922 denotes embryonic
T2584 236-250 _FRAGMENT denotes embryonic stem
T2585 256-261 CL:0002322 denotes cells
T2586 252-254 _FRAGMENT denotes ES
T2587 256-261 CL_GO_EXT:cell denotes cells
T2588 266-270 SO_EXT:0000704 denotes gene
T2589 305-310 PR_EXT:000009218 denotes Ptdsr
T2590 311-315 SO_EXT:sequence_nullness denotes null
T2591 316-322 SO_EXT:0001023 denotes allele
T2592 352-359 SO_EXT:0000704 denotes genetic
T2593 403-408 NCBITaxon:10088 denotes mouse
T2594 424-429 PR_EXT:000009218 denotes Ptdsr
T2595 462-467 PR_EXT:000009218 denotes Ptdsr
T2596 468-469 SO_EXT:sequence_nullness_or_absence denotes -
T2597 470-471 SO_EXT:sequence_nullness_or_absence denotes -
T2598 487-492 PR_EXT:000009218 denotes Ptdsr
T2599 492-493 SO_EXT:normal_or_wild_type_or_present denotes +
T2600 494-495 SO_EXT:sequence_nullness_or_absence denotes -
T2601 496-500 NCBITaxon:10088 denotes mice
T2602 562-567 PR_EXT:000009218 denotes Ptdsr
T2603 568-569 SO_EXT:normal_or_wild_type_or_present denotes +
T2604 570-571 SO_EXT:sequence_nullness_or_absence denotes -
T2605 572-576 NCBITaxon:10088 denotes mice
T2606 618-623 PR_EXT:000009218 denotes Ptdsr
T2607 634-638 NCBITaxon:10088 denotes mice
T2608 655-660 PR_EXT:000009218 denotes Ptdsr
T2609 661-671 GO:0010467 denotes expression
T2610 675-680 PR_EXT:000009218 denotes Ptdsr
T2611 681-682 SO_EXT:sequence_nullness_or_absence denotes -
T2612 683-684 SO_EXT:sequence_nullness_or_absence denotes -
T2613 685-692 UBERON:0000922 denotes embryos
T2614 710-712 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T2615 801-809 GO_EXT:breeding denotes breeding
T2616 826-830 NCBITaxon:10088 denotes mice
T2617 847-855 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T2618 860-866 GO_EXT:fatality_or_lethality denotes lethal
T2619 885-892 SO_EXT:sequence_altered_entity denotes mutants
T2620 979-988 UBERON:0000922 denotes embryonic
T2621 979-1000 GO:0009790 denotes embryonic development
T2622 1017-1022 PR_EXT:000009218 denotes Ptdsr
T2623 1029-1037 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T2624 1045-1054 GO_EXT:breeding denotes breedings
T2625 1102-1109 UBERON:0000922 denotes embryos
T2626 1169-1176 UBERON:0000922 denotes embryos
T2627 1198-1203 PR_EXT:000009218 denotes Ptdsr
T2628 1203-1204 SO_EXT:normal_or_wild_type_or_present denotes +
T2629 1205-1206 SO_EXT:sequence_nullness_or_absence denotes -
T2630 1206-1210 NCBITaxon:10088 denotes mice
T2631 1234-1241 UBERON:0000922 denotes embryos
T2632 1259-1270 GO:0007565 denotes gestational
T2633 1306-1311 PR_EXT:000009218 denotes Ptdsr
T2634 1333-1340 UBERON:0000922 denotes embryos
T2635 1388-1396 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T2636 1430-1439 UBERON:0000922 denotes embryonic
T2637 1440-1449 GO_EXT:fatality_or_lethality denotes lethality
R1342 T2585 T2584 _lexicallyChainedTo cells,embryonic stem
R1343 T2585 T2586 _lexicallyChainedTo cells,ES

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2497 44-62 CHEBI:18303 denotes phosphatidylserine
T2498 44-71 PR:000009218 denotes phosphatidylserine receptor
T2499 72-77 PR:000009218 denotes Ptdsr
T2500 99-105 SO:0001023 denotes allele
T2501 113-118 NCBITaxon:10088 denotes mouse
T2502 122-126 SO:0000704 denotes gene
T2503 192-197 PR:000009218 denotes Ptdsr
T2504 207-211 NCBITaxon:10088 denotes mice
T2505 236-245 UBERON:0000922 denotes embryonic
T2506 236-250 _FRAGMENT denotes embryonic stem
T2507 256-261 CL:0002322 denotes cells
T2508 252-254 _FRAGMENT denotes ES
T2509 266-270 SO:0000704 denotes gene
T2510 305-310 PR:000009218 denotes Ptdsr
T2511 316-322 SO:0001023 denotes allele
T2512 352-359 SO:0000704 denotes genetic
T2513 403-408 NCBITaxon:10088 denotes mouse
T2514 424-429 PR:000009218 denotes Ptdsr
T2515 462-467 PR:000009218 denotes Ptdsr
T2516 487-492 PR:000009218 denotes Ptdsr
T2517 496-500 NCBITaxon:10088 denotes mice
T2518 562-567 PR:000009218 denotes Ptdsr
T2519 572-576 NCBITaxon:10088 denotes mice
T2520 618-623 PR:000009218 denotes Ptdsr
T2521 634-638 NCBITaxon:10088 denotes mice
T2522 655-660 PR:000009218 denotes Ptdsr
T2523 661-671 GO:0010467 denotes expression
T2524 675-680 PR:000009218 denotes Ptdsr
T2525 685-692 UBERON:0000922 denotes embryos
T2526 826-830 NCBITaxon:10088 denotes mice
T2527 979-988 UBERON:0000922 denotes embryonic
T2528 979-1000 GO:0009790 denotes embryonic development
T2529 1017-1022 PR:000009218 denotes Ptdsr
T2530 1102-1109 UBERON:0000922 denotes embryos
T2531 1169-1176 UBERON:0000922 denotes embryos
T2532 1198-1203 PR:000009218 denotes Ptdsr
T2533 1206-1210 NCBITaxon:10088 denotes mice
T2534 1234-1241 UBERON:0000922 denotes embryos
T2535 1259-1270 GO:0007565 denotes gestational
T2536 1306-1311 PR:000009218 denotes Ptdsr
T2537 1333-1340 UBERON:0000922 denotes embryos
T2538 1430-1439 UBERON:0000922 denotes embryonic
R1340 T2507 T2506 _lexicallyChainedTo cells,embryonic stem
R1341 T2507 T2508 _lexicallyChainedTo cells,ES

2_test

Id Subject Object Predicate Lexical cue
15345036-14645847-55938503 213-215 14645847 denotes 31
15345036-14715629-55938504 216-218 14715629 denotes 32
15345036-8398989-55938505 282-284 8398989 denotes 33