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PMC:549712 / 6485-7145 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2186 0-4 RB denotes Very
T2187 5-13 RB denotes recently
T2188 30-35 VBN denotes found
T2189 13-15 , denotes ,
T2190 15-20 NN denotes Ptdsr
T2191 21-24 VBZ denotes has
T2192 25-29 VBN denotes been
T2193 36-38 IN denotes in
T2194 39-42 DT denotes the
T2195 48-55 NN denotes nucleus
T2196 43-47 NN denotes cell
T2197 55-56 . denotes .
T2198 56-219 sentence denotes Its nuclear localization is mediated by five independent nuclear localization signals, each of which alone is capable of targeting Ptdsr to the cell nucleus [29].
T2199 57-60 PRP$ denotes Its
T2200 69-81 NN denotes localization
T2201 61-68 JJ denotes nuclear
T2202 85-93 VBN denotes mediated
T2203 82-84 VBZ denotes is
T2204 94-96 IN denotes by
T2205 97-101 CD denotes five
T2206 135-142 NNS denotes signals
T2207 102-113 JJ denotes independent
T2208 114-121 JJ denotes nuclear
T2209 122-134 NN denotes localization
T2210 142-144 , denotes ,
T2211 144-148 DT denotes each
T2212 164-166 VBZ denotes is
T2213 149-151 IN denotes of
T2214 152-157 WDT denotes which
T2215 158-163 RB denotes alone
T2216 167-174 JJ denotes capable
T2217 175-177 IN denotes of
T2218 178-187 VBG denotes targeting
T2219 188-193 NN denotes Ptdsr
T2220 194-196 IN denotes to
T2221 197-200 DT denotes the
T2222 206-213 NN denotes nucleus
T2223 201-205 NN denotes cell
T2224 214-215 -LRB- denotes [
T2225 215-217 CD denotes 29
T2226 217-218 -RRB- denotes ]
T2227 218-219 . denotes .
T2228 219-348 sentence denotes Moreover, an additional study performed recently in Hydra showed an exclusively nuclear localization for the Ptdsr protein [30].
T2229 220-228 RB denotes Moreover
T2230 278-284 VBD denotes showed
T2231 228-230 , denotes ,
T2232 230-232 DT denotes an
T2233 244-249 NN denotes study
T2234 233-243 JJ denotes additional
T2235 250-259 VBN denotes performed
T2236 260-268 RB denotes recently
T2237 269-271 IN denotes in
T2238 272-277 NNP denotes Hydra
T2239 285-287 DT denotes an
T2240 308-320 NN denotes localization
T2241 288-299 RB denotes exclusively
T2242 300-307 JJ denotes nuclear
T2243 321-324 IN denotes for
T2244 325-328 DT denotes the
T2245 335-342 NN denotes protein
T2246 329-334 NN denotes Ptdsr
T2247 343-344 -LRB- denotes [
T2248 344-346 CD denotes 30
T2249 346-347 -RRB- denotes ]
T2250 347-348 . denotes .
T2251 348-481 sentence denotes Most interestingly, the nuclear localization of Ptdsr in Hydra epithelial cells did not change upon phagocytosis of apoptotic cells.
T2252 349-353 RBS denotes Most
T2253 354-367 RB denotes interestingly
T2254 437-443 VB denotes change
T2255 367-369 , denotes ,
T2256 369-372 DT denotes the
T2257 381-393 NN denotes localization
T2258 373-380 JJ denotes nuclear
T2259 394-396 IN denotes of
T2260 397-402 NN denotes Ptdsr
T2261 403-405 IN denotes in
T2262 406-411 NNP denotes Hydra
T2263 423-428 NNS denotes cells
T2264 412-422 JJ denotes epithelial
T2265 429-432 VBD denotes did
T2266 433-436 RB denotes not
T2267 444-448 IN denotes upon
T2268 449-461 NN denotes phagocytosis
T2269 462-464 IN denotes of
T2270 465-474 JJ denotes apoptotic
T2271 475-480 NNS denotes cells
T2272 480-481 . denotes .
T2273 481-660 sentence denotes These reports challenge the original hypothesis, according to which Ptdsr is an exclusively transmembrane receptor for apoptotic cell recognition and anti-inflammatory signaling.
T2274 482-487 DT denotes These
T2275 488-495 NNS denotes reports
T2276 496-505 VBP denotes challenge
T2277 506-509 DT denotes the
T2278 519-529 NN denotes hypothesis
T2279 510-518 JJ denotes original
T2280 529-531 , denotes ,
T2281 531-540 VBG denotes according
T2282 556-558 VBZ denotes is
T2283 541-543 IN denotes to
T2284 544-549 WDT denotes which
T2285 550-555 NN denotes Ptdsr
T2286 559-561 DT denotes an
T2287 588-596 NN denotes receptor
T2288 562-573 RB denotes exclusively
T2289 574-587 JJ denotes transmembrane
T2290 597-600 IN denotes for
T2291 601-610 JJ denotes apoptotic
T2292 611-615 NN denotes cell
T2293 616-627 NN denotes recognition
T2294 628-631 CC denotes and
T2295 632-649 JJ denotes anti-inflammatory
T2296 650-659 NN denotes signaling
T2297 659-660 . denotes .
R1094 T2275 T2276 nsubj reports,challenge
R1096 T2277 T2278 det the,hypothesis
R1101 T2278 T2276 dobj hypothesis,challenge
R1105 T2279 T2278 amod original,hypothesis
R1112 T2280 T2278 punct ", ",hypothesis
R1115 T2186 T2187 advmod Very,recently
R1116 T2281 T2282 prep according,is
R1117 T2187 T2188 advmod recently,found
R1118 T2282 T2278 relcl is,hypothesis
R1119 T2189 T2188 punct ", ",found
R1120 T2190 T2188 nsubjpass Ptdsr,found
R1121 T2191 T2188 aux has,found
R1122 T2283 T2281 prep to,according
R1123 T2192 T2188 auxpass been,found
R1124 T2193 T2188 prep in,found
R1125 T2194 T2195 det the,nucleus
R1126 T2284 T2283 pobj which,to
R1127 T2285 T2282 nsubj Ptdsr,is
R1128 T2195 T2193 pobj nucleus,in
R1129 T2196 T2195 compound cell,nucleus
R1130 T2286 T2287 det an,receptor
R1131 T2197 T2188 punct .,found
R1132 T2199 T2200 poss Its,localization
R1133 T2287 T2282 attr receptor,is
R1134 T2200 T2202 nsubjpass localization,mediated
R1135 T2201 T2200 amod nuclear,localization
R1136 T2288 T2289 advmod exclusively,transmembrane
R1137 T2203 T2202 auxpass is,mediated
R1138 T2204 T2202 agent by,mediated
R1139 T2289 T2287 amod transmembrane,receptor
R1140 T2205 T2206 nummod five,signals
R1141 T2206 T2204 pobj signals,by
R1142 T2290 T2287 prep for,receptor
R1143 T2207 T2206 amod independent,signals
R1144 T2208 T2209 amod nuclear,localization
R1145 T2209 T2206 compound localization,signals
R1146 T2291 T2292 amod apoptotic,cell
R1147 T2210 T2206 punct ", ",signals
R1148 T2211 T2212 dep each,is
R1149 T2212 T2206 relcl is,signals
R1150 T2292 T2293 compound cell,recognition
R1151 T2213 T2211 prep of,each
R1152 T2214 T2213 pobj which,of
R1153 T2215 T2211 advmod alone,each
R1154 T2293 T2290 pobj recognition,for
R1155 T2216 T2212 acomp capable,is
R1156 T2217 T2216 prep of,capable
R1157 T2218 T2217 pcomp targeting,of
R1158 T2294 T2293 cc and,recognition
R1159 T2219 T2218 dobj Ptdsr,targeting
R1160 T2220 T2218 prep to,targeting
R1161 T2221 T2222 det the,nucleus
R1162 T2222 T2220 pobj nucleus,to
R1163 T2223 T2222 compound cell,nucleus
R1164 T2295 T2296 amod anti-inflammatory,signaling
R1165 T2224 T2225 punct [,29
R1166 T2225 T2202 parataxis 29,mediated
R1167 T2226 T2225 punct ],29
R1168 T2227 T2202 punct .,mediated
R1169 T2296 T2293 conj signaling,recognition
R1170 T2229 T2230 advmod Moreover,showed
R1171 T2297 T2276 punct .,challenge
R1172 T2231 T2230 punct ", ",showed
R1173 T2232 T2233 det an,study
R1175 T2233 T2230 nsubj study,showed
R1176 T2234 T2233 amod additional,study
R1177 T2235 T2233 acl performed,study
R1179 T2236 T2235 advmod recently,performed
R1180 T2237 T2235 prep in,performed
R1182 T2238 T2237 pobj Hydra,in
R1183 T2239 T2240 det an,localization
R1184 T2240 T2230 dobj localization,showed
R1185 T2241 T2242 advmod exclusively,nuclear
R1187 T2242 T2240 amod nuclear,localization
R1188 T2243 T2240 prep for,localization
R1189 T2244 T2245 det the,protein
R1191 T2245 T2243 pobj protein,for
R1192 T2246 T2245 compound Ptdsr,protein
R1194 T2247 T2248 punct [,30
R1195 T2248 T2230 parataxis 30,showed
R1196 T2249 T2248 punct ],30
R1198 T2250 T2230 punct .,showed
R1199 T2252 T2253 advmod Most,interestingly
R1201 T2253 T2254 advmod interestingly,change
R1202 T2255 T2254 punct ", ",change
R1204 T2256 T2257 det the,localization
R1205 T2257 T2254 nsubj localization,change
R1206 T2258 T2257 amod nuclear,localization
R1207 T2259 T2257 prep of,localization
R1209 T2260 T2259 pobj Ptdsr,of
R1210 T2261 T2257 prep in,localization
R1211 T2262 T2263 nmod Hydra,cells
R1212 T2263 T2261 pobj cells,in
R1213 T2264 T2263 amod epithelial,cells
R1214 T2265 T2254 aux did,change
R1216 T2266 T2254 neg not,change
R1217 T2267 T2254 prep upon,change
R1218 T2268 T2267 pobj phagocytosis,upon
R1220 T2269 T2268 prep of,phagocytosis
R1221 T2270 T2271 amod apoptotic,cells
R1222 T2271 T2269 pobj cells,of
R1224 T2272 T2254 punct .,change
R1226 T2274 T2275 det These,reports

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1259 15-20 PR_EXT:000009218 denotes Ptdsr
T1260 43-47 CL_GO_EXT:cell denotes cell
T1261 43-55 GO:0005634 denotes cell nucleus
T1262 61-68 GO:0005634 denotes nuclear
T1263 69-81 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1264 114-121 GO:0005634 denotes nuclear
T1265 114-142 SO_EXT:0001528 denotes nuclear localization signals
T1266 122-134 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1267 178-187 GO_EXT:biological_routing_or_transport denotes targeting
T1268 188-193 PR_EXT:000009218 denotes Ptdsr
T1269 201-205 CL_GO_EXT:cell denotes cell
T1270 201-213 GO:0005634 denotes cell nucleus
T1271 272-277 NCBITaxon:6083 denotes Hydra
T1272 300-307 GO:0005634 denotes nuclear
T1273 308-320 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1274 329-334 PR_EXT:000009218 denotes Ptdsr
T1275 335-342 CHEBI_PR_EXT:protein denotes protein
T1276 373-380 GO:0005634 denotes nuclear
T1277 381-393 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1278 397-402 PR_EXT:000009218 denotes Ptdsr
T1279 406-411 NCBITaxon:6083 denotes Hydra
T1280 412-422 UBERON:0000483 denotes epithelial
T1281 412-428 CL:0000066 denotes epithelial cells
T1282 423-428 CL_GO_EXT:cell denotes cells
T1283 449-480 GO:0043277 denotes phagocytosis of apoptotic cells
T1284 465-480 CL:0000445 denotes apoptotic cells
T1285 475-480 CL_GO_EXT:cell denotes cells
T1286 550-555 PR_EXT:000009218 denotes Ptdsr
T1287 579-587 GO:0016020 denotes membrane
T1288 588-596 GO_EXT:0004872 denotes receptor
T1289 601-610 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1290 601-615 CL:0000445 denotes apoptotic cell
T1291 611-615 CL_GO_EXT:cell denotes cell
T1292 637-649 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1293 650-659 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T987 15-20 PR:000009218 denotes Ptdsr
T988 43-55 GO:0005634 denotes cell nucleus
T989 61-68 GO:0005634 denotes nuclear
T990 114-121 GO:0005634 denotes nuclear
T991 114-142 SO:0001528 denotes nuclear localization signals
T992 188-193 PR:000009218 denotes Ptdsr
T993 201-213 GO:0005634 denotes cell nucleus
T994 272-277 NCBITaxon:6083 denotes Hydra
T995 300-307 GO:0005634 denotes nuclear
T996 329-334 PR:000009218 denotes Ptdsr
T997 373-380 GO:0005634 denotes nuclear
T998 397-402 PR:000009218 denotes Ptdsr
T999 406-411 NCBITaxon:6083 denotes Hydra
T1000 412-422 UBERON:0000483 denotes epithelial
T1001 412-428 CL:0000066 denotes epithelial cells
T1002 449-480 GO:0043277 denotes phagocytosis of apoptotic cells
T1003 465-480 CL:0000445 denotes apoptotic cells
T1004 550-555 PR:000009218 denotes Ptdsr
T1005 579-587 GO:0016020 denotes membrane
T1006 601-615 CL:0000445 denotes apoptotic cell

2_test

Id Subject Object Predicate Lexical cue
15345036-14729065-55938499 215-217 14729065 denotes 29
15345036-15193161-55938500 344-346 15193161 denotes 30