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PMC:549712 / 49141-49649 JSONTXT

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Id Subject Object Predicate Lexical cue
T14478 0-1 DT denotes A
T14479 57-62 NN denotes clone
T14480 2-7 NN denotes Ptdsr
T14481 8-18 VBG denotes containing
T14482 7-8 HYPH denotes -
T14483 19-28 JJ denotes bacterial
T14484 40-50 NN denotes chromosome
T14485 29-39 JJ denotes artificial
T14486 51-52 -LRB- denotes (
T14487 52-55 NN denotes BAC
T14488 55-56 -RRB- denotes )
T14489 116-124 VBN denotes isolated
T14490 63-64 -LRB- denotes (
T14491 99-101 NN denotes RP
T14492 64-71 NNP denotes GenBank
T14493 89-97 NN denotes AC091694
T14494 72-81 NN denotes accession
T14495 82-88 NN denotes number
T14496 97-98 : denotes ;
T14497 101-102 HYPH denotes -
T14498 102-104 CD denotes 23
T14499 104-105 HYPH denotes -
T14500 105-110 CD denotes 316F3
T14501 110-111 -RRB- denotes )
T14502 112-115 VBD denotes was
T14503 125-127 IN denotes by
T14504 128-136 NN denotes sequence
T14505 137-145 NN denotes homology
T14506 146-150 IN denotes from
T14507 151-152 DT denotes a
T14508 174-181 NN denotes library
T14509 153-158 NN denotes C57BL
T14510 159-161 NN denotes 6J
T14511 158-159 HYPH denotes /
T14512 162-169 JJ denotes genomic
T14513 170-173 NN denotes BAC
T14514 182-183 -LRB- denotes (
T14515 197-206 NNS denotes Resources
T14516 183-185 NN denotes RP
T14517 185-186 HYPH denotes -
T14518 186-188 CD denotes 23
T14519 188-189 : denotes ;
T14520 190-196 NN denotes BACPAC
T14521 206-208 , denotes ,
T14522 208-215 NNP denotes Oakland
T14523 215-217 , denotes ,
T14524 217-220 NNP denotes USA
T14525 220-221 -RRB- denotes )
T14526 221-222 . denotes .
T14527 222-508 sentence denotes A 14.5 kb KpnI/BamHI fragment containing the entire Ptdsr locus and 5' and 3' flanking regions was subcloned from this BAC clone and a 1.9 kb RsrII/AatII fragment containing exons I and II of the Ptdsr gene was replaced by a 1.2 kb loxP-flanked neomycin-resistance gene cassette (neo).
T14528 223-224 DT denotes A
T14529 244-252 NN denotes fragment
T14530 225-229 CD denotes 14.5
T14531 230-232 NN denotes kb
T14532 233-237 NN denotes KpnI
T14533 238-243 NN denotes BamHI
T14534 237-238 HYPH denotes /
T14535 322-331 VBN denotes subcloned
T14536 253-263 VBG denotes containing
T14537 264-267 DT denotes the
T14538 281-286 NN denotes locus
T14539 268-274 JJ denotes entire
T14540 275-280 NN denotes Ptdsr
T14541 287-290 CC denotes and
T14542 291-292 CD denotes 5
T14543 310-317 NNS denotes regions
T14544 292-293 SYM denotes '
T14545 294-297 CC denotes and
T14546 298-299 CD denotes 3
T14547 299-300 SYM denotes '
T14548 301-309 NN denotes flanking
T14549 318-321 VBD denotes was
T14550 332-336 IN denotes from
T14551 337-341 DT denotes this
T14552 346-351 NN denotes clone
T14553 342-345 NN denotes BAC
T14554 352-355 CC denotes and
T14555 356-357 DT denotes a
T14556 377-385 NN denotes fragment
T14557 358-361 CD denotes 1.9
T14558 362-364 NN denotes kb
T14559 365-370 NN denotes RsrII
T14560 371-376 NN denotes AatII
T14561 370-371 HYPH denotes /
T14562 434-442 VBN denotes replaced
T14563 386-396 VBG denotes containing
T14564 397-402 NNS denotes exons
T14565 403-404 CD denotes I
T14566 405-408 CC denotes and
T14567 409-411 CD denotes II
T14568 412-414 IN denotes of
T14569 415-418 DT denotes the
T14570 425-429 NN denotes gene
T14571 419-424 NN denotes Ptdsr
T14572 430-433 VBD denotes was
T14573 443-445 IN denotes by
T14574 446-447 DT denotes a
T14575 493-501 NN denotes cassette
T14576 448-451 CD denotes 1.2
T14577 452-454 NN denotes kb
T14578 455-459 NN denotes loxP
T14579 460-467 VBN denotes flanked
T14580 459-460 HYPH denotes -
T14581 468-476 NN denotes neomycin
T14582 477-487 NN denotes resistance
T14583 476-477 HYPH denotes -
T14584 488-492 NN denotes gene
T14585 502-503 -LRB- denotes (
T14586 503-506 NN denotes neo
T14587 506-507 -RRB- denotes )
T14588 507-508 . denotes .
R8633 T14478 T14479 det A,clone
R8634 T14479 T14489 nsubjpass clone,isolated
R8635 T14480 T14481 npadvmod Ptdsr,containing
R8636 T14481 T14479 amod containing,clone
R8637 T14482 T14481 punct -,containing
R8638 T14483 T14484 amod bacterial,chromosome
R8639 T14484 T14479 nmod chromosome,clone
R8640 T14485 T14484 amod artificial,chromosome
R8641 T14486 T14484 punct (,chromosome
R8642 T14487 T14484 appos BAC,chromosome
R8643 T14488 T14479 punct ),clone
R8644 T14490 T14491 punct (,RP
R8645 T14491 T14479 parataxis RP,clone
R8646 T14492 T14493 compound GenBank,AC091694
R8647 T14493 T14491 dep AC091694,RP
R8648 T14494 T14493 compound accession,AC091694
R8649 T14495 T14493 compound number,AC091694
R8650 T14496 T14491 punct ;,RP
R8651 T14497 T14491 punct -,RP
R8652 T14498 T14491 nummod 23,RP
R8653 T14499 T14491 punct -,RP
R8654 T14500 T14491 nummod 316F3,RP
R8655 T14501 T14491 punct ),RP
R8656 T14502 T14489 auxpass was,isolated
R8657 T14503 T14489 prep by,isolated
R8658 T14504 T14505 compound sequence,homology
R8659 T14505 T14503 pobj homology,by
R8660 T14506 T14505 prep from,homology
R8661 T14507 T14508 det a,library
R8662 T14508 T14506 pobj library,from
R8663 T14509 T14510 nmod C57BL,6J
R8664 T14510 T14508 nmod 6J,library
R8665 T14511 T14510 punct /,6J
R8666 T14512 T14508 amod genomic,library
R8667 T14513 T14508 compound BAC,library
R8668 T14514 T14515 punct (,Resources
R8669 T14515 T14508 parataxis Resources,library
R8670 T14516 T14515 dep RP,Resources
R8671 T14517 T14516 punct -,RP
R8672 T14518 T14516 nummod 23,RP
R8673 T14519 T14515 punct ;,Resources
R8674 T14520 T14515 compound BACPAC,Resources
R8675 T14521 T14515 punct ", ",Resources
R8676 T14522 T14515 npadvmod Oakland,Resources
R8677 T14523 T14515 punct ", ",Resources
R8678 T14524 T14515 npadvmod USA,Resources
R8679 T14525 T14515 punct ),Resources
R8680 T14526 T14489 punct .,isolated
R8681 T14528 T14529 det A,fragment
R8682 T14529 T14535 nsubjpass fragment,subcloned
R8683 T14530 T14531 nummod 14.5,kb
R8684 T14531 T14529 compound kb,fragment
R8685 T14532 T14533 compound KpnI,BamHI
R8686 T14533 T14529 compound BamHI,fragment
R8687 T14534 T14533 punct /,BamHI
R8688 T14536 T14529 acl containing,fragment
R8689 T14537 T14538 det the,locus
R8690 T14538 T14536 dobj locus,containing
R8691 T14539 T14538 amod entire,locus
R8692 T14540 T14538 compound Ptdsr,locus
R8693 T14541 T14538 cc and,locus
R8694 T14542 T14543 nummod 5,regions
R8695 T14543 T14538 conj regions,locus
R8696 T14544 T14542 punct ',5
R8697 T14545 T14542 cc and,5
R8698 T14546 T14542 conj 3,5
R8699 T14547 T14546 punct ',3
R8700 T14548 T14543 compound flanking,regions
R8701 T14549 T14535 auxpass was,subcloned
R8702 T14550 T14535 prep from,subcloned
R8703 T14551 T14552 det this,clone
R8704 T14552 T14550 pobj clone,from
R8705 T14553 T14552 compound BAC,clone
R8706 T14554 T14535 cc and,subcloned
R8707 T14555 T14556 det a,fragment
R8708 T14556 T14562 nsubjpass fragment,replaced
R8709 T14557 T14558 nummod 1.9,kb
R8710 T14558 T14556 compound kb,fragment
R8711 T14559 T14560 compound RsrII,AatII
R8712 T14560 T14556 compound AatII,fragment
R8713 T14561 T14560 punct /,AatII
R8714 T14562 T14535 conj replaced,subcloned
R8715 T14563 T14556 acl containing,fragment
R8716 T14564 T14565 nmod exons,I
R8717 T14565 T14563 dobj I,containing
R8718 T14566 T14565 cc and,I
R8719 T14567 T14565 conj II,I
R8720 T14568 T14565 prep of,I
R8721 T14569 T14570 det the,gene
R8722 T14570 T14568 pobj gene,of
R8723 T14571 T14570 compound Ptdsr,gene
R8724 T14572 T14562 auxpass was,replaced
R8725 T14573 T14562 prep by,replaced
R8726 T14574 T14575 det a,cassette
R8727 T14575 T14573 pobj cassette,by
R8728 T14576 T14577 nummod 1.2,kb
R8729 T14577 T14575 nmod kb,cassette
R8730 T14578 T14579 npadvmod loxP,flanked
R8731 T14579 T14575 amod flanked,cassette
R8732 T14580 T14579 punct -,flanked
R8733 T14581 T14582 compound neomycin,resistance
R8734 T14582 T14575 compound resistance,cassette
R8735 T14583 T14582 punct -,resistance
R8736 T14584 T14575 compound gene,cassette
R8737 T14585 T14586 punct (,neo
R8738 T14586 T14575 parataxis neo,cassette
R8739 T14587 T14586 punct ),neo
R8740 T14588 T14562 punct .,replaced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14367 2-7 PR_EXT:000009218 denotes Ptdsr
T14368 19-28 NCBITaxon:2 denotes bacterial
T14369 19-50 SO_EXT:0000153 denotes bacterial artificial chromosome
T14370 40-50 GO_SO_EXT:chromosome denotes chromosome
T14371 52-55 SO_EXT:0000153 denotes BAC
T14372 57-62 SO_EXT:sequence_cloned_entity denotes clone
T14373 128-136 SO_EXT:biological_sequence denotes sequence
T14374 162-169 SO_EXT:0001026 denotes genomic
T14375 170-173 SO_EXT:0000153 denotes BAC
T14376 231-232 CHEBI_SO_EXT:base denotes b
T14377 238-243 PR_EXT:P23940 denotes BamHI
T14378 275-280 PR_EXT:000009218 denotes Ptdsr
T14379 291-293 _FRAGMENT denotes 5'
T14380 301-317 SO_EXT:0001416 denotes flanking regions
T14381 298-317 SO_EXT:0001417 denotes 3' flanking regions
T14382 342-345 SO_EXT:0000153 denotes BAC
T14383 346-351 SO_EXT:sequence_cloned_entity denotes clone
T14384 363-364 CHEBI_SO_EXT:base denotes b
T14385 397-402 SO_EXT:0000147 denotes exons
T14386 419-424 PR_EXT:000009218 denotes Ptdsr
T14387 425-429 SO_EXT:0000704 denotes gene
T14388 434-442 SO_EXT:sequence_substitution_process denotes replaced
T14389 453-454 CHEBI_SO_EXT:base denotes b
T14390 455-467 SO:0000359 denotes loxP-flanked
T14391 468-476 CHEBI:7507 denotes neomycin
T14392 488-501 SO_EXT:0005853 denotes gene cassette
T14393 503-506 CHEBI_GO_EXT:neomycin_or_neomycin_phosphotransferase denotes neo
R8616 T14380 T14379 _lexicallyChainedTo flanking regions,5'

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14308 2-7 PR:000009218 denotes Ptdsr
T14309 19-28 NCBITaxon:2 denotes bacterial
T14310 19-50 SO:0000153 denotes bacterial artificial chromosome
T14311 52-55 SO:0000153 denotes BAC
T14312 162-169 SO:0001026 denotes genomic
T14313 170-173 SO:0000153 denotes BAC
T14314 238-243 PR:P23940 denotes BamHI
T14315 275-280 PR:000009218 denotes Ptdsr
T14316 291-293 _FRAGMENT denotes 5'
T14317 301-317 SO:0001416 denotes flanking regions
T14318 298-317 SO:0001417 denotes 3' flanking regions
T14319 342-345 SO:0000153 denotes BAC
T14320 397-402 SO:0000147 denotes exons
T14321 419-424 PR:000009218 denotes Ptdsr
T14322 425-429 SO:0000704 denotes gene
T14323 455-467 SO:0000359 denotes loxP-flanked
T14324 468-476 CHEBI:7507 denotes neomycin
T14325 488-501 SO:0005853 denotes gene cassette
R8615 T14317 T14316 _lexicallyChainedTo flanking regions,5'