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exposure of the phospholipid phosphatidylserine (PS) in the outer leaflet of the plasma membrane of apoptotic cells has been described as one of the hallmarks of the induction of apoptosis and is considered to be one of the most important signals required for apoptotic cell recognition and removal [19]. A number of cell-surface and bridging molecules can interact with exposed PS on apoptotic cells. These include the serum proteins β2-glycoprotein 1 and protein S [20,21], the growth-arrest-specific gene product GAS-6 [22], complement activation products [23], the milk fat globule protein MFG-E8 [24], and annexin I [25]. In most cases the receptors on phagocytes that recognize these PS-bridging molecules have not been defined, but it has been reported that GAS-6 is a ligand for the tyrosine kinase receptor Mer and that MFG-E8 can bind to the vitronectin receptor αvβ3 [16,24]. Other molecules that bind PS with varying specificity are the lectin-like oxidized low-density lipoprotein receptor-1 (LOX-1) and the scavenger receptors CD36 and CD68 (for review see [5] and references therein)."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T1151","span":{"begin":20,"end":32},"obj":"CHEBI:16247"},{"id":"T1152","span":{"begin":33,"end":51},"obj":"CHEBI:18303"},{"id":"T1153","span":{"begin":53,"end":55},"obj":"CHEBI:18303"},{"id":"T1154","span":{"begin":85,"end":100},"obj":"GO:0005886"},{"id":"T1155","span":{"begin":104,"end":113},"obj":"GO_PATO_EXT:apoptotic_process_or_quality"},{"id":"T1156","span":{"begin":104,"end":119},"obj":"CL:0000445"},{"id":"T1157","span":{"begin":114,"end":119},"obj":"CL_GO_EXT:cell"},{"id":"T1158","span":{"begin":183,"end":192},"obj":"GO:0006915"},{"id":"T1159","span":{"begin":264,"end":278},"obj":"CL:0000445"},{"id":"T1160","span":{"begin":264,"end":278},"obj":"_FRAGMENT"},{"id":"T1161","span":{"begin":295,"end":302},"obj":"GO:0043277"},{"id":"T1162","span":{"begin":274,"end":278},"obj":"CL_GO_EXT:cell"},{"id":"T1163","span":{"begin":321,"end":325},"obj":"CL_GO_EXT:cell"},{"id":"T1164","span":{"begin":321,"end":333},"obj":"GO:0009986"},{"id":"T1165","span":{"begin":338,"end":346},"obj":"GO:0030674"},{"id":"T1166","span":{"begin":347,"end":356},"obj":"CHEBI:36357"},{"id":"T1167","span":{"begin":383,"end":385},"obj":"CHEBI:18303"},{"id":"T1168","span":{"begin":389,"end":398},"obj":"GO_PATO_EXT:apoptotic_process_or_quality"},{"id":"T1169","span":{"begin":389,"end":404},"obj":"CL:0000445"},{"id":"T1170","span":{"begin":399,"end":404},"obj":"CL_GO_EXT:cell"},{"id":"T1171","span":{"begin":424,"end":429},"obj":"UBERON:0001977"},{"id":"T1172","span":{"begin":430,"end":438},"obj":"CHEBI_PR_EXT:protein"},{"id":"T1173","span":{"begin":439,"end":456},"obj":"PR_EXT:000004157"},{"id":"T1174","span":{"begin":442,"end":454},"obj":"CHEBI:17089"},{"id":"T1175","span":{"begin":461,"end":468},"obj":"CHEBI_PR_EXT:protein"},{"id":"T1176","span":{"begin":461,"end":470},"obj":"PR_EXT:000013269"},{"id":"T1177","span":{"begin":484,"end":490},"obj":"GO_EXT:biological_growth_entity_or_process"},{"id":"T1178","span":{"begin":507,"end":519},"obj":"SO_EXT:gene_product"},{"id":"T1179","span":{"begin":520,"end":525},"obj":"PR_EXT:000007853"},{"id":"T1180","span":{"begin":532,"end":553},"obj":"GO:0006956"},{"id":"T1181","span":{"begin":578,"end":581},"obj":"CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue"},{"id":"T1182","span":{"begin":590,"end":597},"obj":"CHEBI_PR_EXT:protein"},{"id":"T1183","span":{"begin":598,"end":604},"obj":"PR_EXT:000010367"},{"id":"T1184","span":{"begin":615,"end":624},"obj":"PR_EXT:000004071"},{"id":"T1185","span":{"begin":649,"end":658},"obj":"GO_EXT:0004872"},{"id":"T1186","span":{"begin":662,"end":672},"obj":"CL:0000234"},{"id":"T1187","span":{"begin":694,"end":696},"obj":"CHEBI:18303"},{"id":"T1188","span":{"begin":697,"end":705},"obj":"GO:0030674"},{"id":"T1189","span":{"begin":706,"end":715},"obj":"CHEBI:36357"},{"id":"T1190","span":{"begin":769,"end":774},"obj":"PR_EXT:000007853"},{"id":"T1191","span":{"begin":780,"end":786},"obj":"CHEBI_GO_EXT:ligand"},{"id":"T1192","span":{"begin":795,"end":803},"obj":"CHEBI_SO_EXT:tyrosine"},{"id":"T1193","span":{"begin":795,"end":819},"obj":"GO_EXT:0004714"},{"id":"T1194","span":{"begin":820,"end":823},"obj":"PR_EXT:000010329"},{"id":"T1195","span":{"begin":833,"end":839},"obj":"PR_EXT:000010367"},{"id":"T1196","span":{"begin":844,"end":848},"obj":"CHEMINF_GO_EXT:chemical_binding_or_bond_formation"},{"id":"T1197","span":{"begin":868,"end":876},"obj":"GO_EXT:0004872"},{"id":"T1198","span":{"begin":877,"end":881},"obj":"GO:0034683"},{"id":"T1199","span":{"begin":897,"end":906},"obj":"CHEBI:36357"},{"id":"T1200","span":{"begin":912,"end":916},"obj":"CHEMINF_GO_EXT:chemical_binding_or_bond_formation"},{"id":"T1201","span":{"begin":917,"end":919},"obj":"CHEBI:18303"},{"id":"T1202","span":{"begin":953,"end":1008},"obj":"PR_EXT:000011634"},{"id":"T1203","span":{"begin":965,"end":973},"obj":"MOP:0000568"},{"id":"T1204","span":{"begin":974,"end":997},"obj":"CHEBI_GO_EXT:low_density_lipoprotein_particle"},{"id":"T1205","span":{"begin":974,"end":1006},"obj":"GO_PR_EXT:low_density_lipoprotein_receptor"},{"id":"T1206","span":{"begin":1010,"end":1015},"obj":"PR_EXT:000011634"},{"id":"T1207","span":{"begin":1025,"end":1044},"obj":"GO_EXT:0005044"},{"id":"T1208","span":{"begin":1045,"end":1049},"obj":"PR_EXT:000001905"},{"id":"T1209","span":{"begin":1054,"end":1058},"obj":"PR_EXT:000002064"}],"relations":[{"id":"R282","pred":"_lexicallyChainedTo","subj":"T1161","obj":"T1160"}],"text":"The exposure of the phospholipid phosphatidylserine (PS) in the outer leaflet of the plasma membrane of apoptotic cells has been described as one of the hallmarks of the induction of apoptosis and is considered to be one of the most important signals required for apoptotic cell recognition and removal [19]. A number of cell-surface and bridging molecules can interact with exposed PS on apoptotic cells. These include the serum proteins β2-glycoprotein 1 and protein S [20,21], the growth-arrest-specific gene product GAS-6 [22], complement activation products [23], the milk fat globule protein MFG-E8 [24], and annexin I [25]. In most cases the receptors on phagocytes that recognize these PS-bridging molecules have not been defined, but it has been reported that GAS-6 is a ligand for the tyrosine kinase receptor Mer and that MFG-E8 can bind to the vitronectin receptor αvβ3 [16,24]. Other molecules that bind PS with varying specificity are the lectin-like oxidized low-density lipoprotein receptor-1 (LOX-1) and the scavenger receptors CD36 and CD68 (for review see [5] and references therein)."}

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T916","span":{"begin":20,"end":32},"obj":"CHEBI:16247"},{"id":"T917","span":{"begin":33,"end":51},"obj":"CHEBI:18303"},{"id":"T918","span":{"begin":53,"end":55},"obj":"CHEBI:18303"},{"id":"T919","span":{"begin":85,"end":100},"obj":"GO:0005886"},{"id":"T920","span":{"begin":104,"end":119},"obj":"CL:0000445"},{"id":"T921","span":{"begin":183,"end":192},"obj":"GO:0006915"},{"id":"T922","span":{"begin":264,"end":278},"obj":"CL:0000445"},{"id":"T923","span":{"begin":264,"end":278},"obj":"_FRAGMENT"},{"id":"T924","span":{"begin":295,"end":302},"obj":"GO:0043277"},{"id":"T925","span":{"begin":321,"end":333},"obj":"GO:0009986"},{"id":"T926","span":{"begin":338,"end":346},"obj":"GO:0030674"},{"id":"T927","span":{"begin":347,"end":356},"obj":"CHEBI:36357"},{"id":"T928","span":{"begin":383,"end":385},"obj":"CHEBI:18303"},{"id":"T929","span":{"begin":389,"end":404},"obj":"CL:0000445"},{"id":"T930","span":{"begin":424,"end":429},"obj":"UBERON:0001977"},{"id":"T931","span":{"begin":439,"end":456},"obj":"PR:000004157"},{"id":"T932","span":{"begin":442,"end":454},"obj":"CHEBI:17089"},{"id":"T933","span":{"begin":461,"end":470},"obj":"PR:000013269"},{"id":"T934","span":{"begin":507,"end":511},"obj":"SO:0000704"},{"id":"T935","span":{"begin":520,"end":525},"obj":"PR:000007853"},{"id":"T936","span":{"begin":532,"end":553},"obj":"GO:0006956"},{"id":"T937","span":{"begin":598,"end":604},"obj":"PR:000010367"},{"id":"T938","span":{"begin":615,"end":624},"obj":"PR:000004071"},{"id":"T939","span":{"begin":662,"end":672},"obj":"CL:0000234"},{"id":"T940","span":{"begin":694,"end":696},"obj":"CHEBI:18303"},{"id":"T941","span":{"begin":697,"end":705},"obj":"GO:0030674"},{"id":"T942","span":{"begin":706,"end":715},"obj":"CHEBI:36357"},{"id":"T943","span":{"begin":769,"end":774},"obj":"PR:000007853"},{"id":"T944","span":{"begin":820,"end":823},"obj":"PR:000010329"},{"id":"T945","span":{"begin":833,"end":839},"obj":"PR:000010367"},{"id":"T946","span":{"begin":877,"end":881},"obj":"GO:0034683"},{"id":"T947","span":{"begin":897,"end":906},"obj":"CHEBI:36357"},{"id":"T948","span":{"begin":917,"end":919},"obj":"CHEBI:18303"},{"id":"T949","span":{"begin":953,"end":1008},"obj":"PR:000011634"},{"id":"T950","span":{"begin":965,"end":973},"obj":"MOP:0000568"},{"id":"T951","span":{"begin":1010,"end":1015},"obj":"PR:000011634"},{"id":"T952","span":{"begin":1045,"end":1049},"obj":"PR:000001905"},{"id":"T953","span":{"begin":1054,"end":1058},"obj":"PR:000002064"}],"relations":[{"id":"R277","pred":"_lexicallyChainedTo","subj":"T924","obj":"T923"}],"text":"The exposure of the phospholipid phosphatidylserine (PS) in the outer leaflet of the plasma membrane of apoptotic cells has been described as one of the hallmarks of the induction of apoptosis and is considered to be one of the most important signals required for apoptotic cell recognition and removal [19]. A number of cell-surface and bridging molecules can interact with exposed PS on apoptotic cells. These include the serum proteins β2-glycoprotein 1 and protein S [20,21], the growth-arrest-specific gene product GAS-6 [22], complement activation products [23], the milk fat globule protein MFG-E8 [24], and annexin I [25]. In most cases the receptors on phagocytes that recognize these PS-bridging molecules have not been defined, but it has been reported that GAS-6 is a ligand for the tyrosine kinase receptor Mer and that MFG-E8 can bind to the vitronectin receptor αvβ3 [16,24]. Other molecules that bind PS with varying specificity are the lectin-like oxidized low-density lipoprotein receptor-1 (LOX-1) and the scavenger receptors CD36 and CD68 (for review see [5] and references therein)."}

    2_test

    {"project":"2_test","denotations":[{"id":"15345036-1545126-55938484","span":{"begin":304,"end":306},"obj":"1545126"},{"id":"15345036-9786940-55938485","span":{"begin":472,"end":474},"obj":"9786940"},{"id":"15345036-12447359-55938486","span":{"begin":475,"end":477},"obj":"12447359"},{"id":"15345036-9367994-55938487","span":{"begin":527,"end":529},"obj":"9367994"},{"id":"15345036-9858517-55938488","span":{"begin":564,"end":566},"obj":"9858517"},{"id":"15345036-12000961-55938489","span":{"begin":606,"end":608},"obj":"12000961"},{"id":"15345036-12689596-55938490","span":{"begin":626,"end":628},"obj":"12689596"},{"id":"15345036-11346799-55938491","span":{"begin":883,"end":885},"obj":"11346799"},{"id":"15345036-12000961-55938492","span":{"begin":886,"end":888},"obj":"12000961"},{"id":"15345036-15125832-55938493","span":{"begin":1076,"end":1077},"obj":"15125832"}],"text":"The exposure of the phospholipid phosphatidylserine (PS) in the outer leaflet of the plasma membrane of apoptotic cells has been described as one of the hallmarks of the induction of apoptosis and is considered to be one of the most important signals required for apoptotic cell recognition and removal [19]. A number of cell-surface and bridging molecules can interact with exposed PS on apoptotic cells. These include the serum proteins β2-glycoprotein 1 and protein S [20,21], the growth-arrest-specific gene product GAS-6 [22], complement activation products [23], the milk fat globule protein MFG-E8 [24], and annexin I [25]. In most cases the receptors on phagocytes that recognize these PS-bridging molecules have not been defined, but it has been reported that GAS-6 is a ligand for the tyrosine kinase receptor Mer and that MFG-E8 can bind to the vitronectin receptor αvβ3 [16,24]. Other molecules that bind PS with varying specificity are the lectin-like oxidized low-density lipoprotein receptor-1 (LOX-1) and the scavenger receptors CD36 and CD68 (for review see [5] and references therein)."}