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Id Subject Object Predicate Lexical cue
T11000 0-13 RB denotes Interestingly
T11001 31-39 VBD denotes observed
T11002 13-15 , denotes ,
T11003 15-17 PRP denotes we
T11004 18-30 RB denotes occasionally
T11005 40-47 JJ denotes serious
T11006 48-61 NNS denotes malformations
T11007 62-64 IN denotes of
T11008 65-74 NN denotes forebrain
T11009 75-78 CC denotes and
T11010 79-84 JJ denotes nasal
T11011 85-95 NNS denotes structures
T11012 96-98 IN denotes in
T11013 99-104 NN denotes Ptdsr
T11014 105-113 NN denotes knockout
T11015 104-105 HYPH denotes -
T11016 114-121 NNS denotes embryos
T11017 122-126 WDT denotes that
T11018 132-142 VBN denotes associated
T11019 127-131 VBD denotes were
T11020 143-147 IN denotes with
T11021 148-157 JJ denotes bilateral
T11022 158-170 NN denotes anophthalmia
T11023 171-172 -LRB- denotes (
T11024 172-175 VB denotes see
T11025 176-179 IN denotes for
T11026 180-187 NN denotes example
T11027 188-191 DT denotes the
T11028 199-205 NN denotes embryo
T11029 192-198 NN denotes mutant
T11030 206-208 IN denotes in
T11031 209-215 NN denotes Figure
T11032 216-218 NN denotes 1g
T11033 218-219 -RRB- denotes )
T11034 219-220 . denotes .
T11035 220-412 sentence denotes This suggests that Ptdsr is involved in the regulation of differentiation processes within forebrain regions, and that ablation of Ptdsr function might secondarily affect early eye formation.
T11036 221-225 DT denotes This
T11037 226-234 VBZ denotes suggests
T11038 235-239 IN denotes that
T11039 249-257 VBN denotes involved
T11040 240-245 NN denotes Ptdsr
T11041 246-248 VBZ denotes is
T11042 258-260 IN denotes in
T11043 261-264 DT denotes the
T11044 265-275 NN denotes regulation
T11045 276-278 IN denotes of
T11046 279-294 NN denotes differentiation
T11047 295-304 NNS denotes processes
T11048 305-311 IN denotes within
T11049 312-321 NN denotes forebrain
T11050 322-329 NNS denotes regions
T11051 329-331 , denotes ,
T11052 331-334 CC denotes and
T11053 335-339 IN denotes that
T11054 385-391 VB denotes affect
T11055 340-348 NN denotes ablation
T11056 349-351 IN denotes of
T11057 352-357 NN denotes Ptdsr
T11058 358-366 NN denotes function
T11059 367-372 MD denotes might
T11060 373-384 RB denotes secondarily
T11061 392-397 JJ denotes early
T11062 402-411 NN denotes formation
T11063 398-401 NN denotes eye
T11064 411-412 . denotes .
T11065 412-639 sentence denotes Li et al. [31] found smaller lenses in Ptdsr-knockout mice and described the formation of retinal protrusions, although anophthalmia and specific differentiation defects of retinal cell layers were not reported in their study.
T11066 413-415 NNP denotes Li
T11067 428-433 VBD denotes found
T11068 416-418 FW denotes et
T11069 419-422 FW denotes al.
T11070 423-424 -LRB- denotes [
T11071 424-426 CD denotes 31
T11072 426-427 -RRB- denotes ]
T11073 434-441 JJR denotes smaller
T11074 442-448 NNS denotes lenses
T11075 449-451 IN denotes in
T11076 452-457 NN denotes Ptdsr
T11077 458-466 NN denotes knockout
T11078 457-458 HYPH denotes -
T11079 467-471 NNS denotes mice
T11080 472-475 CC denotes and
T11081 476-485 VBD denotes described
T11082 486-489 DT denotes the
T11083 490-499 NN denotes formation
T11084 500-502 IN denotes of
T11085 503-510 JJ denotes retinal
T11086 511-522 NNS denotes protrusions
T11087 522-524 , denotes ,
T11088 524-532 IN denotes although
T11089 615-623 VBN denotes reported
T11090 533-545 NN denotes anophthalmia
T11091 546-549 CC denotes and
T11092 550-558 JJ denotes specific
T11093 575-582 NNS denotes defects
T11094 559-574 NN denotes differentiation
T11095 583-585 IN denotes of
T11096 586-593 JJ denotes retinal
T11097 599-605 NNS denotes layers
T11098 594-598 NN denotes cell
T11099 606-610 VBD denotes were
T11100 611-614 RB denotes not
T11101 624-626 IN denotes in
T11102 627-632 PRP$ denotes their
T11103 633-638 NN denotes study
T11104 638-639 . denotes .
T11105 639-875 sentence denotes Li et al. proposed [31] that the eye phenotype they observed could be explained by failed removal of apoptotic cells during eye development, but we think that the observed defects are unrelated to a failure of apoptotic cell clearance.
T11106 640-642 NNP denotes Li
T11107 650-658 VBN denotes proposed
T11108 643-645 FW denotes et
T11109 646-649 FW denotes al.
T11110 659-660 -LRB- denotes [
T11111 660-662 CD denotes 31
T11112 662-663 -RRB- denotes ]
T11113 664-668 IN denotes that
T11114 710-719 VBN denotes explained
T11115 669-672 DT denotes the
T11116 677-686 NN denotes phenotype
T11117 673-676 NN denotes eye
T11118 687-691 PRP denotes they
T11119 692-700 VBD denotes observed
T11120 701-706 MD denotes could
T11121 707-709 VB denotes be
T11122 720-722 IN denotes by
T11123 723-729 JJ denotes failed
T11124 730-737 NN denotes removal
T11125 738-740 IN denotes of
T11126 741-750 JJ denotes apoptotic
T11127 751-756 NNS denotes cells
T11128 757-763 IN denotes during
T11129 764-767 NN denotes eye
T11130 768-779 NN denotes development
T11131 779-781 , denotes ,
T11132 781-784 CC denotes but
T11133 785-787 PRP denotes we
T11134 788-793 VBP denotes think
T11135 794-798 IN denotes that
T11136 820-823 VBP denotes are
T11137 799-802 DT denotes the
T11138 812-819 NNS denotes defects
T11139 803-811 VBN denotes observed
T11140 824-833 JJ denotes unrelated
T11141 834-836 IN denotes to
T11142 837-838 DT denotes a
T11143 839-846 NN denotes failure
T11144 847-849 IN denotes of
T11145 850-859 JJ denotes apoptotic
T11146 860-864 NN denotes cell
T11147 865-874 NN denotes clearance
T11148 874-875 . denotes .
T11149 875-1028 sentence denotes A recent comprehensive kinetic analysis of apoptosis induction during mouse retinal development described four major peaks of apoptotic cell death [42].
T11150 876-877 DT denotes A
T11151 907-915 NN denotes analysis
T11152 878-884 JJ denotes recent
T11153 885-898 JJ denotes comprehensive
T11154 899-906 JJ denotes kinetic
T11155 972-981 VBD denotes described
T11156 916-918 IN denotes of
T11157 919-928 NN denotes apoptosis
T11158 929-938 NN denotes induction
T11159 939-945 IN denotes during
T11160 946-951 NN denotes mouse
T11161 960-971 NN denotes development
T11162 952-959 NN denotes retinal
T11163 982-986 CD denotes four
T11164 993-998 NNS denotes peaks
T11165 987-992 JJ denotes major
T11166 999-1001 IN denotes of
T11167 1002-1011 JJ denotes apoptotic
T11168 1017-1022 NN denotes death
T11169 1012-1016 NN denotes cell
T11170 1023-1024 -LRB- denotes [
T11171 1024-1026 CD denotes 42
T11172 1026-1027 -RRB- denotes ]
T11173 1027-1028 . denotes .
T11174 1028-1318 sentence denotes This study demonstrated that there is an initial phase of cell death during the invagination of the optic cup (E10.5), followed by subsequent waves of apoptosis induction immediately before and after birth (E18.5 to postnatal day P2), and from postnatal days P9 to P10 and P14 to P16 [42].
T11175 1029-1033 DT denotes This
T11176 1034-1039 NN denotes study
T11177 1040-1052 VBD denotes demonstrated
T11178 1053-1057 IN denotes that
T11179 1064-1066 VBZ denotes is
T11180 1058-1063 EX denotes there
T11181 1067-1069 DT denotes an
T11182 1078-1083 NN denotes phase
T11183 1070-1077 JJ denotes initial
T11184 1084-1086 IN denotes of
T11185 1087-1091 NN denotes cell
T11186 1092-1097 NN denotes death
T11187 1098-1104 IN denotes during
T11188 1105-1108 DT denotes the
T11189 1109-1121 NN denotes invagination
T11190 1122-1124 IN denotes of
T11191 1125-1128 DT denotes the
T11192 1135-1138 NN denotes cup
T11193 1129-1134 JJ denotes optic
T11194 1139-1140 -LRB- denotes (
T11195 1140-1145 NN denotes E10.5
T11196 1145-1146 -RRB- denotes )
T11197 1146-1148 , denotes ,
T11198 1148-1156 VBN denotes followed
T11199 1157-1159 IN denotes by
T11200 1160-1170 JJ denotes subsequent
T11201 1171-1176 NNS denotes waves
T11202 1177-1179 IN denotes of
T11203 1180-1189 NN denotes apoptosis
T11204 1190-1199 NN denotes induction
T11205 1200-1211 RB denotes immediately
T11206 1212-1218 IN denotes before
T11207 1219-1222 CC denotes and
T11208 1223-1228 IN denotes after
T11209 1229-1234 NN denotes birth
T11210 1235-1236 -LRB- denotes (
T11211 1236-1241 NN denotes E18.5
T11212 1242-1244 IN denotes to
T11213 1245-1254 JJ denotes postnatal
T11214 1255-1258 NN denotes day
T11215 1259-1261 NN denotes P2
T11216 1261-1262 -RRB- denotes )
T11217 1262-1264 , denotes ,
T11218 1264-1267 CC denotes and
T11219 1268-1272 IN denotes from
T11220 1273-1282 JJ denotes postnatal
T11221 1288-1290 NN denotes P9
T11222 1283-1287 NNS denotes days
T11223 1291-1293 IN denotes to
T11224 1294-1297 NN denotes P10
T11225 1298-1301 CC denotes and
T11226 1302-1305 NN denotes P14
T11227 1306-1308 IN denotes to
T11228 1309-1312 NN denotes P16
T11229 1313-1314 -LRB- denotes [
T11230 1314-1316 CD denotes 42
T11231 1316-1317 -RRB- denotes ]
T11232 1317-1318 . denotes .
T11233 1318-1574 sentence denotes Thus, besides the formation of the inner and outer layers of the optic cup in early eye development, other major phases of retinal cell apoptosis take place only postnatally and correspond to important periods in the establishment of neuronal connections.
T11234 1319-1323 RB denotes Thus
T11235 1465-1469 VBP denotes take
T11236 1323-1325 , denotes ,
T11237 1325-1332 IN denotes besides
T11238 1333-1336 DT denotes the
T11239 1337-1346 NN denotes formation
T11240 1347-1349 IN denotes of
T11241 1350-1353 DT denotes the
T11242 1370-1376 NNS denotes layers
T11243 1354-1359 JJ denotes inner
T11244 1360-1363 CC denotes and
T11245 1364-1369 JJ denotes outer
T11246 1377-1379 IN denotes of
T11247 1380-1383 DT denotes the
T11248 1390-1393 NN denotes cup
T11249 1384-1389 JJ denotes optic
T11250 1394-1396 IN denotes in
T11251 1397-1402 JJ denotes early
T11252 1407-1418 NN denotes development
T11253 1403-1406 NN denotes eye
T11254 1418-1420 , denotes ,
T11255 1420-1425 JJ denotes other
T11256 1432-1438 NNS denotes phases
T11257 1426-1431 JJ denotes major
T11258 1439-1441 IN denotes of
T11259 1442-1449 JJ denotes retinal
T11260 1455-1464 NN denotes apoptosis
T11261 1450-1454 NN denotes cell
T11262 1470-1475 NN denotes place
T11263 1476-1480 RB denotes only
T11264 1481-1492 RB denotes postnatally
T11265 1493-1496 CC denotes and
T11266 1497-1507 VBP denotes correspond
T11267 1508-1510 IN denotes to
T11268 1511-1520 JJ denotes important
T11269 1521-1528 NNS denotes periods
T11270 1529-1531 IN denotes in
T11271 1532-1535 DT denotes the
T11272 1536-1549 NN denotes establishment
T11273 1550-1552 IN denotes of
T11274 1553-1561 JJ denotes neuronal
T11275 1562-1573 NNS denotes connections
T11276 1573-1574 . denotes .
T11277 1574-1799 sentence denotes Furthermore, cell death during normal retinal development occurs in retinal layers distinct from the inner granular layer where we observed the most pronounced differentiation defects in the Ptdsr -/- mutants described here.
T11278 1575-1586 RB denotes Furthermore
T11279 1633-1639 VBZ denotes occurs
T11280 1586-1588 , denotes ,
T11281 1588-1592 NN denotes cell
T11282 1593-1598 NN denotes death
T11283 1599-1605 IN denotes during
T11284 1606-1612 JJ denotes normal
T11285 1621-1632 NN denotes development
T11286 1613-1620 JJ denotes retinal
T11287 1640-1642 IN denotes in
T11288 1643-1650 JJ denotes retinal
T11289 1651-1657 NNS denotes layers
T11290 1658-1666 JJ denotes distinct
T11291 1667-1671 IN denotes from
T11292 1672-1675 DT denotes the
T11293 1691-1696 NN denotes layer
T11294 1676-1681 JJ denotes inner
T11295 1682-1690 JJ denotes granular
T11296 1697-1702 WRB denotes where
T11297 1706-1714 VBD denotes observed
T11298 1703-1705 PRP denotes we
T11299 1715-1718 DT denotes the
T11300 1751-1758 NNS denotes defects
T11301 1719-1723 RBS denotes most
T11302 1724-1734 JJ denotes pronounced
T11303 1735-1750 NN denotes differentiation
T11304 1759-1761 IN denotes in
T11305 1762-1765 DT denotes the
T11306 1776-1783 NNS denotes mutants
T11307 1766-1771 NN denotes Ptdsr
T11308 1772-1773 SYM denotes -
T11309 1773-1774 HYPH denotes /
T11310 1774-1775 SYM denotes -
T11311 1784-1793 VBN denotes described
T11312 1794-1798 RB denotes here
T11313 1798-1799 . denotes .
T11314 1799-2072 sentence denotes Other studies that connect the postnatal elimination of apoptotic photoreceptor cells to Ptdsr-mediated macrophage engulfment [43] should be interpreted with extreme caution as these studies were based on the monoclonal anti-Ptdsr antibody mAb 217G8E9 [26,43] (see below).
T11315 1800-1805 JJ denotes Other
T11316 1806-1813 NNS denotes studies
T11317 1941-1952 VBN denotes interpreted
T11318 1814-1818 WDT denotes that
T11319 1819-1826 VBP denotes connect
T11320 1827-1830 DT denotes the
T11321 1841-1852 NN denotes elimination
T11322 1831-1840 JJ denotes postnatal
T11323 1853-1855 IN denotes of
T11324 1856-1865 JJ denotes apoptotic
T11325 1880-1885 NNS denotes cells
T11326 1866-1879 NN denotes photoreceptor
T11327 1886-1888 IN denotes to
T11328 1889-1894 NN denotes Ptdsr
T11329 1895-1903 VBN denotes mediated
T11330 1894-1895 HYPH denotes -
T11331 1915-1925 NN denotes engulfment
T11332 1904-1914 NN denotes macrophage
T11333 1926-1927 -LRB- denotes [
T11334 1927-1929 CD denotes 43
T11335 1929-1930 -RRB- denotes ]
T11336 1931-1937 MD denotes should
T11337 1938-1940 VB denotes be
T11338 1953-1957 IN denotes with
T11339 1958-1965 JJ denotes extreme
T11340 1966-1973 NN denotes caution
T11341 1974-1976 IN denotes as
T11342 1996-2001 VBN denotes based
T11343 1977-1982 DT denotes these
T11344 1983-1990 NNS denotes studies
T11345 1991-1995 VBD denotes were
T11346 2002-2004 IN denotes on
T11347 2005-2008 DT denotes the
T11348 2031-2039 NN denotes antibody
T11349 2009-2019 JJ denotes monoclonal
T11350 2020-2030 JJ denotes anti-Ptdsr
T11351 2040-2043 NN denotes mAb
T11352 2044-2051 CD denotes 217G8E9
T11353 2052-2053 -LRB- denotes [
T11354 2056-2058 CD denotes 43
T11355 2053-2055 CD denotes 26
T11356 2055-2056 , denotes ,
T11357 2058-2059 -RRB- denotes ]
T11358 2060-2061 -LRB- denotes (
T11359 2061-2064 VB denotes see
T11360 2065-2070 RB denotes below
T11361 2070-2071 -RRB- denotes )
T11362 2071-2072 . denotes .
R6423 T11000 T11001 advmod Interestingly,observed
R6424 T11002 T11001 punct ", ",observed
R6425 T11003 T11001 nsubj we,observed
R6426 T11004 T11001 advmod occasionally,observed
R6427 T11005 T11006 amod serious,malformations
R6428 T11006 T11001 dobj malformations,observed
R6429 T11007 T11006 prep of,malformations
R6430 T11008 T11007 pobj forebrain,of
R6431 T11009 T11008 cc and,forebrain
R6432 T11010 T11011 amod nasal,structures
R6433 T11011 T11008 conj structures,forebrain
R6434 T11012 T11006 prep in,malformations
R6435 T11013 T11014 compound Ptdsr,knockout
R6436 T11014 T11016 compound knockout,embryos
R6437 T11015 T11014 punct -,knockout
R6438 T11016 T11012 pobj embryos,in
R6439 T11017 T11018 dep that,associated
R6440 T11018 T11006 relcl associated,malformations
R6441 T11019 T11018 auxpass were,associated
R6442 T11020 T11018 prep with,associated
R6443 T11021 T11022 amod bilateral,anophthalmia
R6444 T11022 T11020 pobj anophthalmia,with
R6445 T11023 T11024 punct (,see
R6446 T11024 T11001 parataxis see,observed
R6447 T11025 T11024 prep for,see
R6448 T11026 T11025 pobj example,for
R6449 T11027 T11028 det the,embryo
R6450 T11028 T11024 dobj embryo,see
R6451 T11029 T11028 compound mutant,embryo
R6452 T11030 T11028 prep in,embryo
R6453 T11031 T11032 compound Figure,1g
R6454 T11032 T11030 pobj 1g,in
R6455 T11033 T11024 punct ),see
R6456 T11034 T11001 punct .,observed
R6457 T11036 T11037 nsubj This,suggests
R6458 T11038 T11039 mark that,involved
R6459 T11039 T11037 advcl involved,suggests
R6460 T11040 T11039 nsubjpass Ptdsr,involved
R6461 T11041 T11039 auxpass is,involved
R6462 T11042 T11039 prep in,involved
R6463 T11043 T11044 det the,regulation
R6464 T11044 T11042 pobj regulation,in
R6465 T11045 T11044 prep of,regulation
R6466 T11046 T11047 compound differentiation,processes
R6467 T11047 T11045 pobj processes,of
R6468 T11048 T11044 prep within,regulation
R6469 T11049 T11050 compound forebrain,regions
R6470 T11050 T11048 pobj regions,within
R6471 T11051 T11039 punct ", ",involved
R6472 T11052 T11039 cc and,involved
R6473 T11053 T11054 mark that,affect
R6474 T11054 T11039 conj affect,involved
R6475 T11055 T11054 nsubj ablation,affect
R6476 T11056 T11055 prep of,ablation
R6477 T11057 T11058 compound Ptdsr,function
R6478 T11058 T11056 pobj function,of
R6479 T11059 T11054 aux might,affect
R6480 T11060 T11054 advmod secondarily,affect
R6481 T11061 T11062 amod early,formation
R6482 T11062 T11054 dobj formation,affect
R6483 T11063 T11062 compound eye,formation
R6484 T11064 T11037 punct .,suggests
R6485 T11066 T11067 nsubj Li,found
R6486 T11068 T11069 advmod et,al.
R6487 T11069 T11066 advmod al.,Li
R6488 T11070 T11071 punct [,31
R6489 T11071 T11066 parataxis 31,Li
R6490 T11072 T11071 punct ],31
R6491 T11073 T11074 amod smaller,lenses
R6492 T11074 T11067 dobj lenses,found
R6493 T11075 T11074 prep in,lenses
R6494 T11076 T11077 compound Ptdsr,knockout
R6495 T11077 T11079 compound knockout,mice
R6496 T11078 T11077 punct -,knockout
R6497 T11079 T11075 pobj mice,in
R6498 T11080 T11067 cc and,found
R6499 T11081 T11067 conj described,found
R6500 T11082 T11083 det the,formation
R6501 T11083 T11081 dobj formation,described
R6502 T11084 T11083 prep of,formation
R6503 T11085 T11086 amod retinal,protrusions
R6504 T11086 T11084 pobj protrusions,of
R6505 T11087 T11067 punct ", ",found
R6506 T11088 T11089 mark although,reported
R6507 T11089 T11067 advcl reported,found
R6508 T11090 T11089 nsubjpass anophthalmia,reported
R6509 T11091 T11090 cc and,anophthalmia
R6510 T11092 T11093 amod specific,defects
R6511 T11093 T11090 conj defects,anophthalmia
R6512 T11094 T11093 compound differentiation,defects
R6513 T11095 T11093 prep of,defects
R6514 T11096 T11097 amod retinal,layers
R6515 T11097 T11095 pobj layers,of
R6516 T11098 T11097 compound cell,layers
R6517 T11099 T11089 auxpass were,reported
R6518 T11100 T11089 neg not,reported
R6519 T11101 T11089 prep in,reported
R6520 T11102 T11103 poss their,study
R6521 T11103 T11101 pobj study,in
R6522 T11104 T11067 punct .,found
R6523 T11106 T11107 nsubj Li,proposed
R6524 T11108 T11109 advmod et,al.
R6525 T11109 T11106 advmod al.,Li
R6526 T11110 T11111 punct [,31
R6527 T11111 T11107 parataxis 31,proposed
R6528 T11112 T11111 punct ],31
R6529 T11113 T11114 mark that,explained
R6530 T11114 T11107 ccomp explained,proposed
R6531 T11115 T11116 det the,phenotype
R6532 T11116 T11114 nsubjpass phenotype,explained
R6533 T11117 T11116 compound eye,phenotype
R6534 T11118 T11119 nsubj they,observed
R6535 T11119 T11116 advcl observed,phenotype
R6536 T11120 T11114 aux could,explained
R6537 T11121 T11114 auxpass be,explained
R6538 T11122 T11114 prep by,explained
R6539 T11123 T11124 amod failed,removal
R6540 T11153 T11151 amod comprehensive,analysis
R6541 T11124 T11122 pobj removal,by
R6542 T11125 T11124 prep of,removal
R6543 T11154 T11151 amod kinetic,analysis
R6544 T11126 T11127 amod apoptotic,cells
R6545 T11156 T11151 prep of,analysis
R6546 T11157 T11158 compound apoptosis,induction
R6547 T11158 T11156 pobj induction,of
R6548 T11127 T11125 pobj cells,of
R6549 T11159 T11158 prep during,induction
R6550 T11160 T11161 compound mouse,development
R6551 T11128 T11124 prep during,removal
R6552 T11161 T11159 pobj development,during
R6553 T11162 T11161 compound retinal,development
R6554 T11163 T11164 nummod four,peaks
R6555 T11164 T11155 dobj peaks,described
R6556 T11165 T11164 amod major,peaks
R6557 T11166 T11164 prep of,peaks
R6558 T11129 T11130 compound eye,development
R6559 T11167 T11168 amod apoptotic,death
R6560 T11168 T11166 pobj death,of
R6561 T11169 T11168 compound cell,death
R6562 T11130 T11128 pobj development,during
R6563 T11170 T11171 punct [,42
R6564 T11171 T11155 parataxis 42,described
R6565 T11172 T11171 punct ],42
R6566 T11131 T11107 punct ", ",proposed
R6567 T11173 T11155 punct .,described
R6568 T11132 T11107 cc but,proposed
R6569 T11175 T11176 det This,study
R6570 T11176 T11177 nsubj study,demonstrated
R6571 T11133 T11134 nsubj we,think
R6572 T11178 T11179 mark that,is
R6573 T11179 T11177 ccomp is,demonstrated
R6574 T11134 T11107 conj think,proposed
R6575 T11180 T11179 expl there,is
R6576 T11181 T11182 det an,phase
R6577 T11135 T11136 mark that,are
R6578 T11182 T11179 attr phase,is
R6579 T11183 T11182 amod initial,phase
R6580 T11184 T11182 prep of,phase
R6581 T11136 T11134 ccomp are,think
R6582 T11185 T11186 compound cell,death
R6583 T11137 T11138 det the,defects
R6584 T11186 T11184 pobj death,of
R6585 T11187 T11179 prep during,is
R6586 T11188 T11189 det the,invagination
R6587 T11189 T11187 pobj invagination,during
R6588 T11138 T11136 nsubj defects,are
R6589 T11190 T11189 prep of,invagination
R6590 T11191 T11192 det the,cup
R6591 T11139 T11138 amod observed,defects
R6592 T11192 T11190 pobj cup,of
R6593 T11193 T11192 amod optic,cup
R6594 T11194 T11195 punct (,E10.5
R6595 T11140 T11136 acomp unrelated,are
R6596 T11195 T11189 parataxis E10.5,invagination
R6597 T11196 T11195 punct ),E10.5
R6598 T11197 T11179 punct ", ",is
R6599 T11141 T11140 prep to,unrelated
R6600 T11198 T11179 advcl followed,is
R6601 T11199 T11198 agent by,followed
R6602 T11200 T11201 amod subsequent,waves
R6603 T11142 T11143 det a,failure
R6604 T11201 T11199 pobj waves,by
R6605 T11202 T11201 prep of,waves
R6606 T11143 T11141 pobj failure,to
R6607 T11203 T11204 compound apoptosis,induction
R6608 T11204 T11202 pobj induction,of
R6609 T11205 T11206 advmod immediately,before
R6610 T11206 T11201 prep before,waves
R6611 T11207 T11206 cc and,before
R6612 T11208 T11206 conj after,before
R6613 T11144 T11143 prep of,failure
R6614 T11209 T11208 pobj birth,after
R6615 T11210 T11211 punct (,E18.5
R6616 T11211 T11209 parataxis E18.5,birth
R6617 T11145 T11146 amod apoptotic,cell
R6618 T11212 T11211 prep to,E18.5
R6619 T11213 T11214 amod postnatal,day
R6620 T11214 T11212 pobj day,to
R6621 T11146 T11147 compound cell,clearance
R6622 T11215 T11214 appos P2,day
R6623 T11216 T11211 punct ),E18.5
R6624 T11147 T11144 pobj clearance,of
R6625 T11217 T11206 punct ", ",before
R6626 T11218 T11206 cc and,before
R6627 T11219 T11206 conj from,before
R6628 T11148 T11134 punct .,think
R6629 T11220 T11221 amod postnatal,P9
R6630 T11221 T11219 pobj P9,from
R6631 T11150 T11151 det A,analysis
R6632 T11222 T11221 compound days,P9
R6633 T11223 T11221 prep to,P9
R6634 T11151 T11155 nsubj analysis,described
R6635 T11224 T11223 pobj P10,to
R6636 T11152 T11151 amod recent,analysis
R6637 T11259 T11260 amod retinal,apoptosis
R6638 T11225 T11221 cc and,P9
R6639 T11226 T11221 conj P14,P9
R6640 T11260 T11258 pobj apoptosis,of
R6641 T11227 T11226 prep to,P14
R6642 T11228 T11227 pobj P16,to
R6643 T11229 T11230 punct [,42
R6644 T11261 T11260 compound cell,apoptosis
R6645 T11230 T11177 parataxis 42,demonstrated
R6646 T11231 T11230 punct ],42
R6647 T11262 T11235 dobj place,take
R6648 T11232 T11177 punct .,demonstrated
R6649 T11263 T11235 advmod only,take
R6650 T11234 T11235 advmod Thus,take
R6651 T11264 T11235 advmod postnatally,take
R6652 T11236 T11235 punct ", ",take
R6653 T11237 T11235 prep besides,take
R6654 T11238 T11239 det the,formation
R6655 T11265 T11235 cc and,take
R6656 T11239 T11237 pobj formation,besides
R6657 T11240 T11239 prep of,formation
R6658 T11266 T11235 conj correspond,take
R6659 T11241 T11242 det the,layers
R6660 T11242 T11240 pobj layers,of
R6661 T11243 T11242 amod inner,layers
R6662 T11244 T11243 cc and,inner
R6663 T11245 T11243 conj outer,inner
R6664 T11246 T11242 prep of,layers
R6665 T11267 T11266 prep to,correspond
R6666 T11247 T11248 det the,cup
R6667 T11248 T11246 pobj cup,of
R6668 T11249 T11248 amod optic,cup
R6669 T11268 T11269 amod important,periods
R6670 T11250 T11242 prep in,layers
R6671 T11251 T11252 amod early,development
R6672 T11252 T11250 pobj development,in
R6673 T11269 T11267 pobj periods,to
R6674 T11253 T11252 compound eye,development
R6675 T11254 T11235 punct ", ",take
R6676 T11270 T11269 prep in,periods
R6677 T11255 T11256 amod other,phases
R6678 T11256 T11235 nsubj phases,take
R6679 T11257 T11256 amod major,phases
R6680 T11271 T11272 det the,establishment
R6681 T11258 T11256 prep of,phases
R6682 T11272 T11270 pobj establishment,in
R6683 T11273 T11272 prep of,establishment
R6684 T11274 T11275 amod neuronal,connections
R6685 T11275 T11273 pobj connections,of
R6687 T11276 T11235 punct .,take
R6691 T11278 T11279 advmod Furthermore,occurs
R6695 T11280 T11279 punct ", ",occurs
R6700 T11281 T11282 compound cell,death
R6703 T11282 T11279 nsubj death,occurs
R6707 T11283 T11282 prep during,death
R6714 T11284 T11285 amod normal,development
R6717 T11285 T11283 pobj development,during
R6721 T11286 T11285 amod retinal,development
R6724 T11287 T11279 prep in,occurs
R6726 T11288 T11289 amod retinal,layers
R6729 T11289 T11287 pobj layers,in
R6733 T11290 T11289 amod distinct,layers
R6737 T11291 T11290 prep from,distinct
R6739 T11292 T11293 det the,layer
R6744 T11293 T11291 pobj layer,from
R6747 T11294 T11293 amod inner,layer
R6750 T11295 T11293 amod granular,layer
R6754 T11296 T11297 advmod where,observed
R6758 T11297 T11293 relcl observed,layer
R6762 T11298 T11297 nsubj we,observed
R6770 T11299 T11300 det the,defects
R6774 T11300 T11297 dobj defects,observed
R6778 T11301 T11302 advmod most,pronounced
R6782 T11302 T11300 amod pronounced,defects
R6785 T11303 T11300 compound differentiation,defects
R6789 T11304 T11300 prep in,defects
R6793 T11305 T11306 det the,mutants
R6796 T11306 T11304 pobj mutants,in
R6800 T11307 T11306 nmod Ptdsr,mutants
R6804 T11308 T11307 punct -,Ptdsr
R6808 T11309 T11307 punct /,Ptdsr
R6812 T11310 T11307 punct -,Ptdsr
R6819 T11311 T11306 acl described,mutants
R6822 T11312 T11311 advmod here,described
R6823 T11313 T11279 punct .,occurs
R6824 T11315 T11316 amod Other,studies
R6825 T11316 T11317 nsubjpass studies,interpreted
R6828 T11318 T11319 dep that,connect
R6833 T11319 T11316 relcl connect,studies
R6837 T11320 T11321 det the,elimination
R6839 T11321 T11319 dobj elimination,connect
R6842 T11322 T11321 amod postnatal,elimination
R6846 T11323 T11321 prep of,elimination
R6849 T11324 T11325 amod apoptotic,cells
R6853 T11325 T11323 pobj cells,of
R6857 T11326 T11325 compound photoreceptor,cells
R6860 T11327 T11319 prep to,connect
R6864 T11328 T11329 npadvmod Ptdsr,mediated
R6870 T11329 T11331 amod mediated,engulfment
R6873 T11330 T11329 punct -,mediated
R6877 T11331 T11327 pobj engulfment,to
R6881 T11332 T11331 compound macrophage,engulfment
R6885 T11333 T11334 punct [,43
R6888 T11334 T11316 parataxis 43,studies
R6892 T11335 T11334 punct ],43
R6896 T11336 T11317 aux should,interpreted
R6900 T11337 T11317 auxpass be,interpreted
R6904 T11338 T11317 prep with,interpreted
R6907 T11339 T11340 amod extreme,caution
R6911 T11340 T11338 pobj caution,with
R6914 T11341 T11342 mark as,based
R6919 T11342 T11317 advcl based,interpreted
R6923 T11343 T11344 det these,studies
R6926 T11344 T11342 nsubjpass studies,based
R6930 T11345 T11342 auxpass were,based
R6933 T11346 T11342 prep on,based
R6937 T11347 T11348 det the,antibody
R6940 T11348 T11346 pobj antibody,on
R6944 T11349 T11348 amod monoclonal,antibody
R6947 T11350 T11348 amod anti-Ptdsr,antibody
R6948 T11351 T11348 appos mAb,antibody
R6950 T11352 T11351 nummod 217G8E9,mAb
R6954 T11353 T11354 punct [,43
R6957 T11354 T11342 parataxis 43,based
R6960 T11355 T11354 nummod 26,43
R6963 T11356 T11354 punct ",",43
R6964 T11357 T11354 punct ],43
R6965 T11358 T11359 punct (,see
R6966 T11359 T11317 parataxis see,interpreted
R6967 T11360 T11359 advmod below,see
R6971 T11361 T11359 punct ),see
R6976 T11362 T11317 punct .,interpreted

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9650 65-74 UBERON:0001890 denotes forebrain
T9651 79-84 UBERON:0000004 denotes nasal
T9652 99-104 PR_EXT:000009218 denotes Ptdsr
T9653 114-121 UBERON:0000922 denotes embryos
T9654 192-198 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T9655 199-205 UBERON:0000922 denotes embryo
T9656 240-245 PR_EXT:000009218 denotes Ptdsr
T9657 265-275 GO:0065007 denotes regulation
T9658 279-294 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T9659 312-321 UBERON:0001890 denotes forebrain
T9660 352-357 PR_EXT:000009218 denotes Ptdsr
T9661 398-401 UBERON:0000970 denotes eye
T9662 398-411 GO:0001654 denotes eye formation
T9663 442-448 UBERON_EXT:lens denotes lenses
T9664 452-457 PR_EXT:000009218 denotes Ptdsr
T9665 467-471 NCBITaxon:10088 denotes mice
T9666 503-510 UBERON:0000966 denotes retinal
T9667 511-522 UBERON:0004529 denotes protrusions
T9668 559-574 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T9669 586-593 UBERON:0000966 denotes retinal
T9670 586-598 CL:0009004 denotes retinal cell
T9671 594-598 CL_GO_EXT:cell denotes cell
T9672 594-605 UBERON:0000119 denotes cell layers
T9673 673-676 UBERON:0000970 denotes eye
T9674 730-756 GO:0043277 denotes removal of apoptotic cells
T9675 741-756 CL:0000445 denotes apoptotic cells
T9676 751-756 CL_GO_EXT:cell denotes cells
T9677 764-767 UBERON:0000970 denotes eye
T9678 764-779 GO:0001654 denotes eye development
T9679 850-864 CL:0000445 denotes apoptotic cell
T9680 850-874 GO:0043277 denotes apoptotic cell clearance
T9681 860-864 CL_GO_EXT:cell denotes cell
T9682 919-928 GO:0006915 denotes apoptosis
T9683 946-951 NCBITaxon:10088 denotes mouse
T9684 952-959 UBERON:0000966 denotes retinal
T9685 952-971 GO:0060041 denotes retinal development
T9686 1002-1016 CL:0000445 denotes apoptotic cell
T9687 1002-1022 GO:0006915 denotes apoptotic cell death
T9688 1012-1016 CL_GO_EXT:cell denotes cell
T9689 1087-1091 CL_GO_EXT:cell denotes cell
T9690 1087-1097 GO:0008219 denotes cell death
T9691 1129-1138 UBERON:0003072 denotes optic cup
T9692 1180-1189 GO:0006915 denotes apoptosis
T9693 1229-1234 GO:0007567 denotes birth
T9694 1249-1254 GO:0007567 denotes natal
T9695 1277-1282 GO:0007567 denotes natal
T9696 1354-1359 _FRAGMENT denotes inner
T9697 1370-1379 _FRAGMENT denotes layers of
T9699 1364-1379 _FRAGMENT denotes outer layers of
T9700 1384-1393 UBERON:0005424 denotes optic cup
T9701 1403-1406 UBERON:0000970 denotes eye
T9702 1403-1418 GO:0001654 denotes eye development
T9703 1442-1449 UBERON:0000966 denotes retinal
T9704 1442-1454 CL:0009004 denotes retinal cell
T9705 1450-1454 CL_GO_EXT:cell denotes cell
T9706 1450-1464 GO:0006915 denotes cell apoptosis
T9707 1485-1492 GO:0007567 denotes natally
T9708 1553-1561 CL:0000540 denotes neuronal
T9709 1588-1592 CL_GO_EXT:cell denotes cell
T9710 1588-1598 GO:0008219 denotes cell death
T9711 1613-1620 UBERON:0000966 denotes retinal
T9712 1613-1632 GO:0060041 denotes retinal development
T9713 1643-1657 UBERON:0001781 denotes retinal layers
T9714 1676-1696 UBERON:0001791 denotes inner granular layer
T9715 1735-1750 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T9716 1766-1771 PR_EXT:000009218 denotes Ptdsr
T9717 1772-1773 SO_EXT:sequence_nullness_or_absence denotes -
T9718 1774-1775 SO_EXT:sequence_nullness_or_absence denotes -
T9719 1776-1783 SO_EXT:sequence_altered_entity denotes mutants
T9720 1835-1840 GO:0007567 denotes natal
T9721 1841-1865 _FRAGMENT denotes elimination of apoptotic
T9722 1880-1885 GO:0043277 denotes cells
T9723 1856-1865 _FRAGMENT denotes apoptotic
T9724 1880-1885 CL:0000445 denotes cells
T9725 1866-1885 CL:0000210 denotes photoreceptor cells
T9726 1880-1885 CL_GO_EXT:cell denotes cells
T9727 1889-1894 PR_EXT:000009218 denotes Ptdsr
T9728 1904-1914 CL:0000235 denotes macrophage
T9729 2025-2030 PR_EXT:000009218 denotes Ptdsr
T9730 2031-2039 GO:0042571 denotes antibody
T9698 1384-1393 UBERON:0005425 denotes optic cup
R5285 T9697 T9696 _lexicallyChainedTo layers of,inner
R5286 T9698 T9697 _lexicallyChainedTo optic cup,layers of
R5287 T9700 T9699 _lexicallyChainedTo optic cup,outer layers of
R5288 T9722 T9721 _lexicallyChainedTo cells,elimination of apoptotic
R5289 T9724 T9723 _lexicallyChainedTo cells,apoptotic

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9313 65-74 UBERON:0001890 denotes forebrain
T9314 79-84 UBERON:0000004 denotes nasal
T9315 99-104 PR:000009218 denotes Ptdsr
T9316 114-121 UBERON:0000922 denotes embryos
T9317 199-205 UBERON:0000922 denotes embryo
T9318 240-245 PR:000009218 denotes Ptdsr
T9319 265-275 GO:0065007 denotes regulation
T9320 312-321 UBERON:0001890 denotes forebrain
T9321 352-357 PR:000009218 denotes Ptdsr
T9322 398-401 UBERON:0000970 denotes eye
T9323 398-411 GO:0001654 denotes eye formation
T9324 452-457 PR:000009218 denotes Ptdsr
T9325 467-471 NCBITaxon:10088 denotes mice
T9326 503-510 UBERON:0000966 denotes retinal
T9327 511-522 UBERON:0004529 denotes protrusions
T9328 586-593 UBERON:0000966 denotes retinal
T9329 586-598 CL:0009004 denotes retinal cell
T9330 594-605 UBERON:0000119 denotes cell layers
T9331 673-676 UBERON:0000970 denotes eye
T9332 730-756 GO:0043277 denotes removal of apoptotic cells
T9333 741-756 CL:0000445 denotes apoptotic cells
T9334 764-767 UBERON:0000970 denotes eye
T9335 764-779 GO:0001654 denotes eye development
T9336 850-864 CL:0000445 denotes apoptotic cell
T9337 850-874 GO:0043277 denotes apoptotic cell clearance
T9338 919-928 GO:0006915 denotes apoptosis
T9339 946-951 NCBITaxon:10088 denotes mouse
T9340 952-959 UBERON:0000966 denotes retinal
T9341 952-971 GO:0060041 denotes retinal development
T9342 1002-1016 CL:0000445 denotes apoptotic cell
T9343 1002-1022 GO:0006915 denotes apoptotic cell death
T9344 1087-1097 GO:0008219 denotes cell death
T9345 1129-1138 UBERON:0003072 denotes optic cup
T9346 1180-1189 GO:0006915 denotes apoptosis
T9347 1229-1234 GO:0007567 denotes birth
T9348 1249-1254 GO:0007567 denotes natal
T9349 1277-1282 GO:0007567 denotes natal
T9350 1354-1359 _FRAGMENT denotes inner
T9351 1370-1379 _FRAGMENT denotes layers of
T9352 1384-1393 UBERON:0005425 denotes optic cup
T9353 1364-1379 _FRAGMENT denotes outer layers of
T9354 1384-1393 UBERON:0005424 denotes optic cup
T9355 1403-1406 UBERON:0000970 denotes eye
T9356 1403-1418 GO:0001654 denotes eye development
T9357 1442-1449 UBERON:0000966 denotes retinal
T9358 1442-1454 CL:0009004 denotes retinal cell
T9359 1450-1464 GO:0006915 denotes cell apoptosis
T9360 1485-1492 GO:0007567 denotes natally
T9361 1553-1561 CL:0000540 denotes neuronal
T9362 1588-1598 GO:0008219 denotes cell death
T9363 1613-1620 UBERON:0000966 denotes retinal
T9364 1613-1632 GO:0060041 denotes retinal development
T9365 1643-1657 UBERON:0001781 denotes retinal layers
T9366 1676-1696 UBERON:0001791 denotes inner granular layer
T9367 1766-1771 PR:000009218 denotes Ptdsr
T9368 1835-1840 GO:0007567 denotes natal
T9369 1841-1865 _FRAGMENT denotes elimination of apoptotic
T9370 1880-1885 GO:0043277 denotes cells
T9371 1856-1865 _FRAGMENT denotes apoptotic
T9372 1880-1885 CL:0000445 denotes cells
T9373 1866-1885 CL:0000210 denotes photoreceptor cells
T9374 1889-1894 PR:000009218 denotes Ptdsr
T9375 1904-1914 CL:0000235 denotes macrophage
T9376 2025-2030 PR:000009218 denotes Ptdsr
T9377 2031-2039 GO:0042571 denotes antibody
R5269 T9351 T9350 _lexicallyChainedTo layers of,inner
R5270 T9352 T9351 _lexicallyChainedTo optic cup,layers of
R5271 T9354 T9353 _lexicallyChainedTo optic cup,outer layers of
R5272 T9370 T9369 _lexicallyChainedTo cells,elimination of apoptotic
R5273 T9372 T9371 _lexicallyChainedTo cells,apoptotic

2_test

Id Subject Object Predicate Lexical cue
15345036-14645847-55938529 424-426 14645847 denotes 31
15345036-14645847-55938530 660-662 14645847 denotes 31
15345036-14517994-55938531 1024-1026 14517994 denotes 42
15345036-14517994-55938532 1314-1316 14517994 denotes 42
15345036-12759244-55938533 1927-1929 12759244 denotes 43
15345036-10811223-55938534 2053-2055 10811223 denotes 26
15345036-12759244-55938535 2056-2058 12759244 denotes 43