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PMC:549712 / 3027-4492 JSONTXT

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Id Subject Object Predicate Lexical cue
T1505 0-6 RB denotes Almost
T1506 16-21 NNS denotes types
T1507 7-10 DT denotes all
T1508 11-15 NN denotes cell
T1509 26-35 VB denotes recognize
T1510 22-25 MD denotes can
T1511 35-37 , denotes ,
T1512 37-44 VB denotes respond
T1513 45-47 IN denotes to
T1514 47-49 , denotes ,
T1515 49-52 CC denotes and
T1516 53-59 VB denotes ingest
T1517 60-69 JJ denotes apoptotic
T1518 70-75 NNS denotes cells
T1519 76-78 IN denotes by
T1520 79-84 VBG denotes using
T1521 85-93 JJ denotes specific
T1522 94-98 NNS denotes sets
T1523 99-101 IN denotes of
T1524 102-112 JJ denotes phagocytic
T1525 113-122 NNS denotes receptors
T1526 123-127 WDT denotes that
T1527 128-132 VBP denotes bind
T1528 133-135 IN denotes to
T1529 136-144 JJ denotes specific
T1530 145-152 NNS denotes ligands
T1531 153-155 IN denotes on
T1532 156-165 JJ denotes apoptotic
T1533 166-171 NNS denotes cells
T1534 171-172 . denotes .
T1535 172-418 sentence denotes Detailed genetic studies in Drosophila and Caenorhabditis elegans have recently yielded evidence that basic phagocytic mechanisms and pathways for the recognition and engulfment of apoptotic cells are highly conserved throughout phylogeny [7,8].
T1536 173-181 JJ denotes Detailed
T1537 190-197 NNS denotes studies
T1538 182-189 JJ denotes genetic
T1539 253-260 VBN denotes yielded
T1540 198-200 IN denotes in
T1541 201-211 NNP denotes Drosophila
T1542 212-215 CC denotes and
T1543 216-230 NNP denotes Caenorhabditis
T1544 231-238 NNP denotes elegans
T1545 239-243 VBP denotes have
T1546 244-252 RB denotes recently
T1547 261-269 NN denotes evidence
T1548 270-274 IN denotes that
T1549 370-373 VBP denotes are
T1550 275-280 JJ denotes basic
T1551 292-302 NNS denotes mechanisms
T1552 281-291 JJ denotes phagocytic
T1553 303-306 CC denotes and
T1554 307-315 NNS denotes pathways
T1555 316-319 IN denotes for
T1556 320-323 DT denotes the
T1557 324-335 NN denotes recognition
T1558 336-339 CC denotes and
T1559 340-350 NN denotes engulfment
T1560 351-353 IN denotes of
T1561 354-363 JJ denotes apoptotic
T1562 364-369 NNS denotes cells
T1563 374-380 RB denotes highly
T1564 381-390 JJ denotes conserved
T1565 391-401 IN denotes throughout
T1566 402-411 NN denotes phylogeny
T1567 412-413 -LRB- denotes [
T1568 415-416 CD denotes 8
T1569 413-414 CD denotes 7
T1570 414-415 , denotes ,
T1571 416-417 -RRB- denotes ]
T1572 417-418 . denotes .
T1573 418-527 sentence denotes In vertebrates, a number of receptors have been identified that can mediate phagocytosis of apoptotic cells.
T1574 419-421 IN denotes In
T1575 467-477 VBN denotes identified
T1576 422-433 NNS denotes vertebrates
T1577 433-435 , denotes ,
T1578 435-436 DT denotes a
T1579 437-443 NN denotes number
T1580 444-446 IN denotes of
T1581 447-456 NNS denotes receptors
T1582 457-461 VBP denotes have
T1583 462-466 VBN denotes been
T1584 478-482 WDT denotes that
T1585 487-494 VB denotes mediate
T1586 483-486 MD denotes can
T1587 495-507 NN denotes phagocytosis
T1588 508-510 IN denotes of
T1589 511-520 JJ denotes apoptotic
T1590 521-526 NNS denotes cells
T1591 526-527 . denotes .
T1592 527-773 sentence denotes These include, for example, scavenger receptors and pattern recognition receptors such as CD36, SR-A and CD14, integrins such as the vitronectin receptor αvβ3, and members of the collectin family and their receptors CD91 and calreticulin [9-13].
T1593 528-533 DT denotes These
T1594 534-541 VBP denotes include
T1595 541-543 , denotes ,
T1596 543-546 IN denotes for
T1597 547-554 NN denotes example
T1598 554-556 , denotes ,
T1599 556-565 NN denotes scavenger
T1600 566-575 NNS denotes receptors
T1601 576-579 CC denotes and
T1602 580-587 NN denotes pattern
T1603 588-599 NN denotes recognition
T1604 600-609 NNS denotes receptors
T1605 610-614 JJ denotes such
T1606 615-617 IN denotes as
T1607 618-622 NN denotes CD36
T1608 622-624 , denotes ,
T1609 624-626 NN denotes SR
T1610 627-628 NN denotes A
T1611 626-627 HYPH denotes -
T1612 629-632 CC denotes and
T1613 633-637 NN denotes CD14
T1614 637-639 , denotes ,
T1615 639-648 NNS denotes integrins
T1616 649-653 JJ denotes such
T1617 654-656 IN denotes as
T1618 657-660 DT denotes the
T1619 673-681 NN denotes receptor
T1620 661-672 NN denotes vitronectin
T1621 682-686 NN denotes αvβ3
T1622 686-688 , denotes ,
T1623 688-691 CC denotes and
T1624 692-699 NNS denotes members
T1625 700-702 IN denotes of
T1626 703-706 DT denotes the
T1627 717-723 NN denotes family
T1628 707-716 NN denotes collectin
T1629 724-727 CC denotes and
T1630 728-733 PRP$ denotes their
T1631 734-743 NNS denotes receptors
T1632 744-748 NN denotes CD91
T1633 749-752 CC denotes and
T1634 753-765 NN denotes calreticulin
T1635 766-767 -LRB- denotes [
T1636 767-768 CD denotes 9
T1637 768-769 SYM denotes -
T1638 769-771 CD denotes 13
T1639 771-772 -RRB- denotes ]
T1640 772-773 . denotes .
T1641 773-961 sentence denotes The individual roles of these molecules in binding, phagocytosis or transduction of anti-inflammatory signals upon apoptotic cell recognition have not been well defined, however [5,6,14].
T1642 774-777 DT denotes The
T1643 789-794 NNS denotes roles
T1644 778-788 JJ denotes individual
T1645 935-942 VBN denotes defined
T1646 795-797 IN denotes of
T1647 798-803 DT denotes these
T1648 804-813 NNS denotes molecules
T1649 814-816 IN denotes in
T1650 817-824 NN denotes binding
T1651 824-826 , denotes ,
T1652 826-838 NN denotes phagocytosis
T1653 839-841 CC denotes or
T1654 842-854 NN denotes transduction
T1655 855-857 IN denotes of
T1656 858-875 JJ denotes anti-inflammatory
T1657 876-883 NNS denotes signals
T1658 884-888 IN denotes upon
T1659 889-898 JJ denotes apoptotic
T1660 899-903 NN denotes cell
T1661 904-915 NN denotes recognition
T1662 916-920 VBP denotes have
T1663 921-924 RB denotes not
T1664 925-929 VBN denotes been
T1665 930-934 RB denotes well
T1666 942-944 , denotes ,
T1667 944-951 RB denotes however
T1668 952-953 -LRB- denotes [
T1669 957-959 CD denotes 14
T1670 953-954 CD denotes 5
T1671 954-955 , denotes ,
T1672 955-956 CD denotes 6
T1673 956-957 , denotes ,
T1674 959-960 -RRB- denotes ]
T1675 960-961 . denotes .
T1676 961-1193 sentence denotes The importance of efficient mechanisms for apoptotic cell clearance in vivo is supported by the observation that autoimmune responses can be provoked in mice when key molecules for apoptotic cell recognition and uptake are missing.
T1677 962-965 DT denotes The
T1678 966-976 NN denotes importance
T1679 1041-1050 VBN denotes supported
T1680 977-979 IN denotes of
T1681 980-989 JJ denotes efficient
T1682 990-1000 NNS denotes mechanisms
T1683 1001-1004 IN denotes for
T1684 1005-1014 JJ denotes apoptotic
T1685 1020-1029 NN denotes clearance
T1686 1015-1019 NN denotes cell
T1687 1030-1032 FW denotes in
T1688 1033-1037 FW denotes vivo
T1689 1038-1040 VBZ denotes is
T1690 1051-1053 IN denotes by
T1691 1054-1057 DT denotes the
T1692 1058-1069 NN denotes observation
T1693 1070-1074 IN denotes that
T1694 1103-1111 VBN denotes provoked
T1695 1075-1085 JJ denotes autoimmune
T1696 1086-1095 NNS denotes responses
T1697 1096-1099 MD denotes can
T1698 1100-1102 VB denotes be
T1699 1112-1114 IN denotes in
T1700 1115-1119 NNS denotes mice
T1701 1120-1124 WRB denotes when
T1702 1181-1184 VBP denotes are
T1703 1125-1128 JJ denotes key
T1704 1129-1138 NNS denotes molecules
T1705 1139-1142 IN denotes for
T1706 1143-1152 JJ denotes apoptotic
T1707 1158-1169 NN denotes recognition
T1708 1153-1157 NN denotes cell
T1709 1170-1173 CC denotes and
T1710 1174-1180 NN denotes uptake
T1711 1185-1192 JJ denotes missing
T1712 1192-1193 . denotes .
T1713 1193-1465 sentence denotes This has been reported for knockout mice lacking the complement protein C1q [15], for mice with a mutation in the tyrosine kinase receptor gene Mer [16] and, more recently, in mice lacking transglutaminase 2 or milk fat globule epidermal growth factor 8 (MFG-E8) [17,18].
T1714 1194-1198 DT denotes This
T1715 1208-1216 VBN denotes reported
T1716 1199-1202 VBZ denotes has
T1717 1203-1207 VBN denotes been
T1718 1217-1220 IN denotes for
T1719 1221-1229 NN denotes knockout
T1720 1230-1234 NNS denotes mice
T1721 1235-1242 VBG denotes lacking
T1722 1243-1246 DT denotes the
T1723 1258-1265 NN denotes protein
T1724 1247-1257 NN denotes complement
T1725 1266-1269 NN denotes C1q
T1726 1270-1271 -LRB- denotes [
T1727 1271-1273 CD denotes 15
T1728 1273-1274 -RRB- denotes ]
T1729 1274-1276 , denotes ,
T1730 1276-1279 IN denotes for
T1731 1280-1284 NNS denotes mice
T1732 1285-1289 IN denotes with
T1733 1290-1291 DT denotes a
T1734 1292-1300 NN denotes mutation
T1735 1301-1303 IN denotes in
T1736 1304-1307 DT denotes the
T1737 1333-1337 NN denotes gene
T1738 1308-1316 NN denotes tyrosine
T1739 1317-1323 NN denotes kinase
T1740 1324-1332 NN denotes receptor
T1741 1338-1341 NN denotes Mer
T1742 1342-1343 -LRB- denotes [
T1743 1343-1345 CD denotes 16
T1744 1345-1346 -RRB- denotes ]
T1745 1347-1350 CC denotes and
T1746 1350-1352 , denotes ,
T1747 1352-1356 RBR denotes more
T1748 1357-1365 RB denotes recently
T1749 1367-1369 IN denotes in
T1750 1365-1367 , denotes ,
T1751 1370-1374 NNS denotes mice
T1752 1375-1382 VBG denotes lacking
T1753 1383-1399 NN denotes transglutaminase
T1754 1400-1401 CD denotes 2
T1755 1402-1404 CC denotes or
T1756 1405-1409 NN denotes milk
T1757 1410-1413 NN denotes fat
T1758 1414-1421 NN denotes globule
T1759 1439-1445 NN denotes factor
T1760 1422-1431 JJ denotes epidermal
T1761 1432-1438 NN denotes growth
T1762 1446-1447 CD denotes 8
T1763 1448-1449 -LRB- denotes (
T1764 1449-1452 NN denotes MFG
T1765 1453-1455 NN denotes E8
T1766 1452-1453 HYPH denotes -
T1767 1455-1456 -RRB- denotes )
T1768 1457-1458 -LRB- denotes [
T1769 1461-1463 CD denotes 18
T1770 1458-1460 CD denotes 17
T1771 1460-1461 , denotes ,
T1772 1463-1464 -RRB- denotes ]
T1773 1464-1465 . denotes .
R461 T1505 T1506 advmod Almost,types
R462 T1506 T1509 nsubj types,recognize
R463 T1507 T1506 det all,types
R464 T1508 T1506 compound cell,types
R465 T1510 T1509 aux can,recognize
R466 T1511 T1509 punct ", ",recognize
R467 T1512 T1509 conj respond,recognize
R468 T1513 T1512 prep to,respond
R469 T1514 T1512 punct ", ",respond
R470 T1515 T1512 cc and,respond
R471 T1516 T1512 conj ingest,respond
R472 T1517 T1518 amod apoptotic,cells
R473 T1518 T1516 dobj cells,ingest
R474 T1519 T1509 prep by,recognize
R475 T1520 T1519 pcomp using,by
R476 T1521 T1522 amod specific,sets
R477 T1522 T1520 dobj sets,using
R478 T1523 T1522 prep of,sets
R479 T1524 T1525 amod phagocytic,receptors
R480 T1525 T1523 pobj receptors,of
R481 T1526 T1527 dep that,bind
R482 T1527 T1525 relcl bind,receptors
R483 T1528 T1527 prep to,bind
R484 T1529 T1530 amod specific,ligands
R485 T1530 T1528 pobj ligands,to
R486 T1531 T1530 prep on,ligands
R487 T1532 T1533 amod apoptotic,cells
R488 T1533 T1531 pobj cells,on
R489 T1534 T1509 punct .,recognize
R490 T1536 T1537 amod Detailed,studies
R491 T1537 T1539 nsubj studies,yielded
R492 T1538 T1537 amod genetic,studies
R493 T1540 T1537 prep in,studies
R494 T1541 T1540 pobj Drosophila,in
R495 T1542 T1541 cc and,Drosophila
R496 T1543 T1544 compound Caenorhabditis,elegans
R497 T1544 T1541 conj elegans,Drosophila
R498 T1545 T1539 aux have,yielded
R499 T1546 T1539 advmod recently,yielded
R500 T1547 T1539 dobj evidence,yielded
R501 T1548 T1549 mark that,are
R503 T1550 T1551 amod basic,mechanisms
R504 T1551 T1549 nsubj mechanisms,are
R505 T1552 T1551 amod phagocytic,mechanisms
R506 T1553 T1551 cc and,mechanisms
R507 T1554 T1551 conj pathways,mechanisms
R508 T1555 T1551 prep for,mechanisms
R509 T1556 T1557 det the,recognition
R510 T1557 T1555 pobj recognition,for
R511 T1558 T1557 cc and,recognition
R512 T1559 T1557 conj engulfment,recognition
R513 T1560 T1557 prep of,recognition
R514 T1561 T1562 amod apoptotic,cells
R515 T1562 T1560 pobj cells,of
R516 T1563 T1564 advmod highly,conserved
R517 T1564 T1549 acomp conserved,are
R518 T1565 T1549 prep throughout,are
R519 T1566 T1565 pobj phylogeny,throughout
R520 T1567 T1568 punct [,8
R521 T1568 T1539 parataxis 8,yielded
R522 T1569 T1568 nummod 7,8
R523 T1570 T1568 punct ",",8
R524 T1571 T1568 punct ],8
R525 T1572 T1539 punct .,yielded
R526 T1574 T1575 prep In,identified
R527 T1576 T1574 pobj vertebrates,In
R528 T1577 T1575 punct ", ",identified
R529 T1578 T1579 det a,number
R530 T1579 T1575 nsubjpass number,identified
R531 T1580 T1579 prep of,number
R532 T1581 T1580 pobj receptors,of
R533 T1582 T1575 aux have,identified
R534 T1583 T1575 auxpass been,identified
R535 T1584 T1585 dep that,mediate
R536 T1585 T1575 ccomp mediate,identified
R537 T1586 T1585 aux can,mediate
R538 T1587 T1585 dobj phagocytosis,mediate
R539 T1588 T1587 prep of,phagocytosis
R540 T1589 T1590 amod apoptotic,cells
R541 T1590 T1588 pobj cells,of
R542 T1591 T1575 punct .,identified
R543 T1593 T1594 nsubj These,include
R544 T1595 T1594 punct ", ",include
R545 T1596 T1594 prep for,include
R546 T1597 T1596 pobj example,for
R547 T1598 T1594 punct ", ",include
R548 T1599 T1600 compound scavenger,receptors
R549 T1600 T1594 dobj receptors,include
R550 T1601 T1600 cc and,receptors
R551 T1602 T1603 compound pattern,recognition
R552 T1603 T1604 compound recognition,receptors
R553 T1604 T1600 conj receptors,receptors
R554 T1605 T1606 amod such,as
R555 T1606 T1600 prep as,receptors
R556 T1607 T1606 pobj CD36,as
R557 T1608 T1607 punct ", ",CD36
R558 T1609 T1610 compound SR,A
R559 T1610 T1607 conj A,CD36
R560 T1611 T1610 punct -,A
R561 T1612 T1610 cc and,A
R562 T1613 T1610 conj CD14,A
R563 T1614 T1600 punct ", ",receptors
R564 T1615 T1600 conj integrins,receptors
R565 T1616 T1617 amod such,as
R566 T1617 T1615 prep as,integrins
R567 T1618 T1619 det the,receptor
R568 T1619 T1617 pobj receptor,as
R569 T1620 T1619 compound vitronectin,receptor
R570 T1621 T1619 appos αvβ3,receptor
R571 T1622 T1615 punct ", ",integrins
R572 T1623 T1615 cc and,integrins
R573 T1624 T1615 conj members,integrins
R574 T1625 T1624 prep of,members
R575 T1626 T1627 det the,family
R576 T1627 T1625 pobj family,of
R577 T1628 T1627 compound collectin,family
R578 T1629 T1624 cc and,members
R579 T1630 T1631 poss their,receptors
R580 T1631 T1624 conj receptors,members
R581 T1632 T1631 appos CD91,receptors
R582 T1633 T1632 cc and,CD91
R583 T1634 T1632 conj calreticulin,CD91
R584 T1635 T1636 punct [,9
R585 T1636 T1594 parataxis 9,include
R586 T1637 T1638 punct -,13
R587 T1638 T1636 prep 13,9
R588 T1639 T1636 punct ],9
R589 T1640 T1594 punct .,include
R590 T1642 T1643 det The,roles
R591 T1643 T1645 nsubjpass roles,defined
R592 T1644 T1643 amod individual,roles
R593 T1646 T1643 prep of,roles
R594 T1647 T1648 det these,molecules
R595 T1648 T1646 pobj molecules,of
R596 T1649 T1643 prep in,roles
R597 T1650 T1649 pobj binding,in
R598 T1651 T1650 punct ", ",binding
R599 T1652 T1650 conj phagocytosis,binding
R600 T1653 T1652 cc or,phagocytosis
R601 T1654 T1652 conj transduction,phagocytosis
R602 T1655 T1654 prep of,transduction
R603 T1656 T1657 amod anti-inflammatory,signals
R604 T1657 T1655 pobj signals,of
R605 T1658 T1654 prep upon,transduction
R606 T1659 T1660 amod apoptotic,cell
R607 T1660 T1661 compound cell,recognition
R608 T1661 T1658 pobj recognition,upon
R609 T1662 T1645 aux have,defined
R610 T1663 T1645 neg not,defined
R611 T1664 T1645 auxpass been,defined
R612 T1665 T1645 advmod well,defined
R613 T1666 T1645 punct ", ",defined
R614 T1667 T1645 advmod however,defined
R615 T1668 T1669 punct [,14
R616 T1669 T1645 parataxis 14,defined
R617 T1670 T1669 nummod 5,14
R618 T1671 T1669 punct ",",14
R619 T1672 T1669 nummod 6,14
R620 T1673 T1669 punct ",",14
R621 T1674 T1669 punct ],14
R622 T1675 T1645 punct .,defined
R623 T1677 T1678 det The,importance
R624 T1678 T1679 nsubjpass importance,supported
R625 T1680 T1678 prep of,importance
R626 T1681 T1682 amod efficient,mechanisms
R627 T1682 T1680 pobj mechanisms,of
R628 T1683 T1678 prep for,importance
R629 T1684 T1685 amod apoptotic,clearance
R630 T1685 T1683 pobj clearance,for
R631 T1686 T1685 compound cell,clearance
R632 T1687 T1688 advmod in,vivo
R633 T1688 T1685 advmod vivo,clearance
R634 T1689 T1679 auxpass is,supported
R635 T1690 T1679 agent by,supported
R636 T1691 T1692 det the,observation
R637 T1692 T1690 pobj observation,by
R638 T1693 T1694 mark that,provoked
R639 T1694 T1692 acl provoked,observation
R640 T1695 T1696 amod autoimmune,responses
R641 T1696 T1694 nsubjpass responses,provoked
R642 T1697 T1694 aux can,provoked
R643 T1698 T1694 auxpass be,provoked
R644 T1699 T1694 prep in,provoked
R645 T1700 T1699 pobj mice,in
R646 T1701 T1702 advmod when,are
R647 T1702 T1694 advcl are,provoked
R648 T1703 T1704 amod key,molecules
R649 T1704 T1702 nsubj molecules,are
R650 T1705 T1704 prep for,molecules
R651 T1706 T1707 amod apoptotic,recognition
R652 T1707 T1705 pobj recognition,for
R653 T1708 T1707 compound cell,recognition
R654 T1709 T1707 cc and,recognition
R655 T1710 T1707 conj uptake,recognition
R656 T1711 T1702 acomp missing,are
R657 T1712 T1679 punct .,supported
R658 T1714 T1715 nsubjpass This,reported
R659 T1716 T1715 aux has,reported
R660 T1717 T1715 auxpass been,reported
R661 T1718 T1715 prep for,reported
R662 T1719 T1720 compound knockout,mice
R663 T1720 T1718 pobj mice,for
R664 T1721 T1720 acl lacking,mice
R665 T1722 T1723 det the,protein
R666 T1723 T1721 dobj protein,lacking
R667 T1724 T1723 compound complement,protein
R668 T1725 T1723 appos C1q,protein
R669 T1726 T1727 punct [,15
R670 T1727 T1718 parataxis 15,for
R671 T1728 T1727 punct ],15
R672 T1729 T1718 punct ", ",for
R673 T1730 T1718 conj for,for
R674 T1731 T1730 pobj mice,for
R675 T1732 T1731 prep with,mice
R676 T1733 T1734 det a,mutation
R677 T1734 T1732 pobj mutation,with
R678 T1735 T1734 prep in,mutation
R679 T1736 T1737 det the,gene
R680 T1737 T1735 pobj gene,in
R681 T1738 T1737 compound tyrosine,gene
R682 T1739 T1737 compound kinase,gene
R683 T1740 T1737 compound receptor,gene
R684 T1741 T1737 appos Mer,gene
R685 T1742 T1743 punct [,16
R686 T1743 T1730 parataxis 16,for
R687 T1744 T1743 punct ],16
R688 T1745 T1730 cc and,for
R689 T1746 T1730 punct ", ",for
R690 T1747 T1748 advmod more,recently
R691 T1748 T1749 advmod recently,in
R692 T1749 T1730 conj in,for
R693 T1750 T1749 punct ", ",in
R694 T1751 T1749 pobj mice,in
R695 T1752 T1751 acl lacking,mice
R696 T1753 T1752 dobj transglutaminase,lacking
R697 T1754 T1753 nummod 2,transglutaminase
R698 T1755 T1753 cc or,transglutaminase
R699 T1756 T1757 nmod milk,fat
R700 T1757 T1758 nmod fat,globule
R701 T1758 T1759 nmod globule,factor
R702 T1759 T1753 conj factor,transglutaminase
R703 T1760 T1759 amod epidermal,factor
R704 T1761 T1759 compound growth,factor
R705 T1762 T1759 nummod 8,factor
R706 T1763 T1759 punct (,factor
R707 T1764 T1765 compound MFG,E8
R708 T1765 T1759 appos E8,factor
R709 T1766 T1765 punct -,E8
R710 T1767 T1715 punct ),reported
R711 T1768 T1769 punct [,18
R712 T1769 T1715 parataxis 18,reported
R713 T1770 T1769 nummod 17,18
R714 T1771 T1769 punct ",",18
R715 T1772 T1769 punct ],18
R716 T1773 T1715 punct .,reported
R502 T1549 T1547 acl are,evidence

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1078 11-15 CL_GO_EXT:cell denotes cell
T1079 37-44 GO_EXT:reaction_or_response denotes respond
T1080 60-69 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1081 60-75 CL:0000445 denotes apoptotic cells
T1082 70-75 CL_GO_EXT:cell denotes cells
T1083 102-112 GO:0006909 denotes phagocytic
T1084 113-122 GO_EXT:0004872 denotes receptors
T1085 128-132 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T1086 145-152 CHEBI_GO_EXT:ligand denotes ligands
T1087 156-165 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1088 156-171 CL:0000445 denotes apoptotic cells
T1089 166-171 CL_GO_EXT:cell denotes cells
T1090 182-189 SO_EXT:0000704 denotes genetic
T1091 201-211 NCBITaxon:7215 denotes Drosophila
T1092 216-238 NCBITaxon:6239 denotes Caenorhabditis elegans
T1093 281-291 GO:0006909 denotes phagocytic
T1094 340-369 GO:0043652 denotes engulfment of apoptotic cells
T1095 354-369 CL:0000445 denotes apoptotic cells
T1096 364-369 CL_GO_EXT:cell denotes cells
T1097 381-390 SO_EXT:biological_conservation_process_or_quality denotes conserved
T1098 422-433 NCBITaxon:7742 denotes vertebrates
T1099 447-456 GO_EXT:0004872 denotes receptors
T1100 495-526 GO:0043277 denotes phagocytosis of apoptotic cells
T1101 511-526 CL:0000445 denotes apoptotic cells
T1102 521-526 CL_GO_EXT:cell denotes cells
T1103 556-575 GO_EXT:0005044 denotes scavenger receptors
T1104 580-609 GO_EXT:0038187 denotes pattern recognition receptors
T1105 618-622 PR_EXT:000001905 denotes CD36
T1106 624-628 PR_EXT:000001885 denotes SR-A
T1107 633-637 PR_EXT:000001889 denotes CD14
T1108 639-648 GO_PR_EXT:integrin denotes integrins
T1109 673-681 GO_EXT:0004872 denotes receptor
T1110 682-686 GO:0034683 denotes αvβ3
T1111 734-743 GO_EXT:0004872 denotes receptors
T1112 744-748 PR_EXT:000002058 denotes CD91
T1113 753-765 PR_EXT:000004984 denotes calreticulin
T1114 804-813 CHEBI:36357 denotes molecules
T1115 817-824 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1116 826-838 GO:0006909 denotes phagocytosis
T1117 842-857 _FRAGMENT denotes transduction of
T1118 876-883 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signals
T1119 863-875 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1120 889-898 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1121 889-903 CL:0000445 denotes apoptotic cell
T1122 899-903 CL_GO_EXT:cell denotes cell
T1123 1005-1019 CL:0000445 denotes apoptotic cell
T1124 1005-1029 GO:0043277 denotes apoptotic cell clearance
T1125 1015-1019 CL_GO_EXT:cell denotes cell
T1126 1079-1085 UBERON:0002405 denotes immune
T1127 1086-1095 GO_EXT:reaction_or_response denotes responses
T1128 1115-1119 NCBITaxon:10088 denotes mice
T1129 1129-1138 CHEBI:36357 denotes molecules
T1130 1143-1157 CL:0000445 denotes apoptotic cell
T1131 1143-1157 _FRAGMENT denotes apoptotic cell
T1132 1174-1180 GO:0043652 denotes uptake
T1133 1153-1157 CL_GO_EXT:cell denotes cell
T1134 1230-1234 NCBITaxon:10088 denotes mice
T1135 1258-1265 CHEBI_PR_EXT:protein denotes protein
T1136 1280-1284 NCBITaxon:10088 denotes mice
T1137 1292-1300 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T1138 1308-1316 CHEBI_SO_EXT:tyrosine denotes tyrosine
T1139 1308-1332 GO_EXT:0004714 denotes tyrosine kinase receptor
T1140 1333-1337 SO_EXT:0000704 denotes gene
T1141 1338-1341 PR_EXT:000010329 denotes Mer
T1142 1370-1374 NCBITaxon:10088 denotes mice
T1143 1383-1399 GO_EXT:0003810 denotes transglutaminase
T1144 1383-1401 PR_EXT:000016293 denotes transglutaminase 2
T1145 1405-1447 PR_EXT:000010367 denotes milk fat globule epidermal growth factor 8
T1146 1410-1413 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1147 1422-1431 UBERON:0007376 denotes epidermal
T1148 1432-1438 GO_EXT:biological_growth_entity_or_process denotes growth
T1149 1432-1445 GO_EXT:0008083 denotes growth factor
T1150 1449-1455 PR_EXT:000010367 denotes MFG-E8
R280 T1118 T1117 _lexicallyChainedTo signals,transduction of
R281 T1132 T1131 _lexicallyChainedTo uptake,apoptotic cell

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T878 60-75 CL:0000445 denotes apoptotic cells
T879 102-112 GO:0006909 denotes phagocytic
T880 156-171 CL:0000445 denotes apoptotic cells
T881 182-189 SO:0000704 denotes genetic
T882 201-211 NCBITaxon:7215 denotes Drosophila
T883 216-238 NCBITaxon:6239 denotes Caenorhabditis elegans
T884 281-291 GO:0006909 denotes phagocytic
T885 340-369 GO:0043652 denotes engulfment of apoptotic cells
T886 354-369 CL:0000445 denotes apoptotic cells
T887 422-433 NCBITaxon:7742 denotes vertebrates
T888 495-526 GO:0043277 denotes phagocytosis of apoptotic cells
T889 511-526 CL:0000445 denotes apoptotic cells
T890 618-622 PR:000001905 denotes CD36
T891 624-628 PR:000001885 denotes SR-A
T892 633-637 PR:000001889 denotes CD14
T893 682-686 GO:0034683 denotes αvβ3
T894 744-748 PR:000002058 denotes CD91
T895 753-765 PR:000004984 denotes calreticulin
T896 804-813 CHEBI:36357 denotes molecules
T897 826-838 GO:0006909 denotes phagocytosis
T898 889-903 CL:0000445 denotes apoptotic cell
T899 1005-1019 CL:0000445 denotes apoptotic cell
T900 1005-1029 GO:0043277 denotes apoptotic cell clearance
T901 1079-1085 UBERON:0002405 denotes immune
T902 1115-1119 NCBITaxon:10088 denotes mice
T903 1129-1138 CHEBI:36357 denotes molecules
T904 1143-1157 CL:0000445 denotes apoptotic cell
T905 1143-1157 _FRAGMENT denotes apoptotic cell
T906 1174-1180 GO:0043652 denotes uptake
T907 1230-1234 NCBITaxon:10088 denotes mice
T908 1280-1284 NCBITaxon:10088 denotes mice
T909 1333-1337 SO:0000704 denotes gene
T910 1338-1341 PR:000010329 denotes Mer
T911 1370-1374 NCBITaxon:10088 denotes mice
T912 1383-1401 PR:000016293 denotes transglutaminase 2
T913 1405-1447 PR:000010367 denotes milk fat globule epidermal growth factor 8
T914 1422-1431 UBERON:0007376 denotes epidermal
T915 1449-1455 PR:000010367 denotes MFG-E8
R276 T906 T905 _lexicallyChainedTo uptake,apoptotic cell

2_test

Id Subject Object Predicate Lexical cue
15345036-10373118-55938474 413-414 10373118 denotes 7
15345036-11595183-55938475 415-416 11595183 denotes 8
15345036-9834113-55938476 767-768 9834113 denotes 9
15345036-8901603-55938476 767-768 8901603 denotes 9
15345036-9548256-55938476 767-768 9548256 denotes 9
15345036-1383273-55938476 767-768 1383273 denotes 9
15345036-11560994-55938476 767-768 11560994 denotes 9
15345036-15125832-55938477 953-954 15125832 denotes 5
15345036-12461569-55938478 955-956 12461569 denotes 6
15345036-14624843-55938479 957-959 14624843 denotes 14
15345036-9590289-55938480 1271-1273 9590289 denotes 15
15345036-11346799-55938481 1343-1345 11346799 denotes 16
15345036-12810961-55938482 1458-1460 12810961 denotes 17
15345036-15155946-55938483 1461-1463 15155946 denotes 18