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PMC:549712 / 21462-24019 JSONTXT

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Id Subject Object Predicate Lexical cue
T6947 0-2 TO denotes To
T6948 3-14 VB denotes investigate
T6949 92-99 VBD denotes stained
T6950 15-22 RBR denotes further
T6951 23-30 IN denotes whether
T6952 61-69 VBN denotes impaired
T6953 31-38 NN denotes removal
T6954 39-41 IN denotes of
T6955 42-51 JJ denotes apoptotic
T6956 52-57 NNS denotes cells
T6957 58-60 VBZ denotes is
T6958 70-72 IN denotes in
T6959 73-78 NN denotes Ptdsr
T6960 83-87 NNS denotes mice
T6961 79-80 SYM denotes -
T6962 80-81 HYPH denotes /
T6963 81-82 SYM denotes -
T6964 87-89 , denotes ,
T6965 89-91 PRP denotes we
T6966 100-121 RB denotes immunohistochemically
T6967 122-125 IN denotes for
T6968 126-135 VBN denotes activated
T6969 136-143 NN denotes caspase
T6970 144-145 CD denotes 3
T6971 146-147 -LRB- denotes (
T6972 147-153 NN denotes aCasp3
T6973 153-154 -RRB- denotes )
T6974 155-158 CC denotes and
T6975 159-167 VBN denotes analyzed
T6976 168-178 JJ denotes additional
T6977 179-185 NNS denotes organs
T6978 186-189 CC denotes and
T6979 190-197 NNS denotes tissues
T6980 198-203 WRB denotes where
T6981 214-219 VBZ denotes plays
T6982 204-213 NN denotes apoptosis
T6983 220-221 DT denotes a
T6984 230-234 NN denotes role
T6985 222-229 JJ denotes crucial
T6986 235-237 IN denotes in
T6987 238-244 NN denotes tissue
T6988 245-255 NN denotes remodeling
T6989 256-262 IN denotes during
T6990 263-274 NN denotes development
T6991 274-275 . denotes .
T6992 275-488 sentence denotes Starting at E12.5, we analyzed and compared the number and distribution of aCasp3-positive cells in over 140 serial sections of three wild-type and six Ptdsr -/- embryos in consecutive and corresponding sections.
T6993 276-284 VBG denotes Starting
T6994 298-306 VBD denotes analyzed
T6995 285-287 IN denotes at
T6996 288-293 NN denotes E12.5
T6997 293-295 , denotes ,
T6998 295-297 PRP denotes we
T6999 307-310 CC denotes and
T7000 311-319 VBD denotes compared
T7001 320-323 DT denotes the
T7002 324-330 NN denotes number
T7003 331-334 CC denotes and
T7004 335-347 NN denotes distribution
T7005 348-350 IN denotes of
T7006 351-357 NN denotes aCasp3
T7007 358-366 JJ denotes positive
T7008 357-358 HYPH denotes -
T7009 367-372 NNS denotes cells
T7010 373-375 IN denotes in
T7011 376-380 IN denotes over
T7012 381-384 CD denotes 140
T7013 392-400 NNS denotes sections
T7014 385-391 JJ denotes serial
T7015 401-403 IN denotes of
T7016 404-409 CD denotes three
T7017 415-419 NN denotes type
T7018 410-414 JJ denotes wild
T7019 414-415 HYPH denotes -
T7020 420-423 CC denotes and
T7021 424-427 CD denotes six
T7022 428-433 NN denotes Ptdsr
T7023 438-445 NNS denotes embryos
T7024 434-435 SYM denotes -
T7025 435-436 HYPH denotes /
T7026 436-437 SYM denotes -
T7027 446-448 IN denotes in
T7028 449-460 JJ denotes consecutive
T7029 479-487 NNS denotes sections
T7030 461-464 CC denotes and
T7031 465-478 JJ denotes corresponding
T7032 487-488 . denotes .
T7033 488-607 sentence denotes The sagittal sections were separated by 5 μm, allowing a detailed analysis of apoptosis in several organs and tissues.
T7034 489-492 DT denotes The
T7035 502-510 NNS denotes sections
T7036 493-501 JJ denotes sagittal
T7037 516-525 VBN denotes separated
T7038 511-515 VBD denotes were
T7039 526-528 IN denotes by
T7040 529-530 CD denotes 5
T7041 531-533 NNS denotes μm
T7042 533-535 , denotes ,
T7043 535-543 VBG denotes allowing
T7044 544-545 DT denotes a
T7045 555-563 NN denotes analysis
T7046 546-554 JJ denotes detailed
T7047 564-566 IN denotes of
T7048 567-576 NN denotes apoptosis
T7049 577-579 IN denotes in
T7050 580-587 JJ denotes several
T7051 588-594 NNS denotes organs
T7052 595-598 CC denotes and
T7053 599-606 NNS denotes tissues
T7054 606-607 . denotes .
T7055 607-831 sentence denotes Tissue restructuring by programmed cell death occurred most notably within the ventral part of the neural tube (Figure 6b,f) and in the developing paravertebral ganglia (Figure 6d,h) with many apoptotic cells being present.
T7056 608-614 NN denotes Tissue
T7057 615-628 NN denotes restructuring
T7058 654-662 VBD denotes occurred
T7059 629-631 IN denotes by
T7060 632-642 VBN denotes programmed
T7061 648-653 NN denotes death
T7062 643-647 NN denotes cell
T7063 663-667 RBS denotes most
T7064 668-675 RB denotes notably
T7065 676-682 IN denotes within
T7066 683-686 DT denotes the
T7067 695-699 NN denotes part
T7068 687-694 JJ denotes ventral
T7069 700-702 IN denotes of
T7070 703-706 DT denotes the
T7071 714-718 NN denotes tube
T7072 707-713 JJ denotes neural
T7073 719-720 -LRB- denotes (
T7074 730-731 NN denotes f
T7075 720-726 NN denotes Figure
T7076 727-729 NN denotes 6b
T7077 729-730 , denotes ,
T7078 731-732 -RRB- denotes )
T7079 733-736 CC denotes and
T7080 737-739 IN denotes in
T7081 740-743 DT denotes the
T7082 769-776 NNS denotes ganglia
T7083 744-754 VBG denotes developing
T7084 755-768 JJ denotes paravertebral
T7085 777-778 -LRB- denotes (
T7086 788-789 NN denotes h
T7087 778-784 NN denotes Figure
T7088 785-787 NN denotes 6d
T7089 787-788 , denotes ,
T7090 789-790 -RRB- denotes )
T7091 791-795 IN denotes with
T7092 796-800 JJ denotes many
T7093 811-816 NNS denotes cells
T7094 801-810 JJ denotes apoptotic
T7095 817-822 VBG denotes being
T7096 823-830 JJ denotes present
T7097 830-831 . denotes .
T7098 831-1009 sentence denotes In these tissues Ptdsr is highly expressed at E12.5 (Figure 2c) but we observed no difference in the number or distribution of apoptotic cells in Ptdsr+/+ and Ptdsr -/- embryos.
T7099 832-834 IN denotes In
T7100 855-857 VBZ denotes is
T7101 835-840 DT denotes these
T7102 841-848 NNS denotes tissues
T7103 849-854 NN denotes Ptdsr
T7104 858-864 RB denotes highly
T7105 865-874 VBN denotes expressed
T7106 875-877 IN denotes at
T7107 878-883 NN denotes E12.5
T7108 884-885 -LRB- denotes (
T7109 892-894 NN denotes 2c
T7110 885-891 NN denotes Figure
T7111 894-895 -RRB- denotes )
T7112 896-899 CC denotes but
T7113 900-902 PRP denotes we
T7114 903-911 VBD denotes observed
T7115 912-914 DT denotes no
T7116 915-925 NN denotes difference
T7117 926-928 IN denotes in
T7118 929-932 DT denotes the
T7119 933-939 NN denotes number
T7120 940-942 CC denotes or
T7121 943-955 NN denotes distribution
T7122 956-958 IN denotes of
T7123 959-968 JJ denotes apoptotic
T7124 969-974 NNS denotes cells
T7125 975-977 IN denotes in
T7126 978-983 NN denotes Ptdsr
T7127 1001-1008 NNS denotes embryos
T7128 983-984 SYM denotes +
T7129 984-985 HYPH denotes /
T7130 985-986 SYM denotes +
T7131 987-990 CC denotes and
T7132 991-996 NN denotes Ptdsr
T7133 997-998 SYM denotes -
T7134 998-999 HYPH denotes /
T7135 999-1000 SYM denotes -
T7136 1008-1009 . denotes .
T7137 1009-1249 sentence denotes The same was true for the developing kidney: apoptotic cells were present in Ptdsr+/+ and Ptdsr -/- embryos, in limited numbers, but we failed to detect any differences in the number of apoptotic cells between the genotypes (Figure 6c,6g).
T7138 1010-1013 DT denotes The
T7139 1014-1018 JJ denotes same
T7140 1019-1022 VBD denotes was
T7141 1071-1075 VBD denotes were
T7142 1023-1027 JJ denotes true
T7143 1028-1031 IN denotes for
T7144 1032-1035 DT denotes the
T7145 1047-1053 NN denotes kidney
T7146 1036-1046 VBG denotes developing
T7147 1053-1055 : denotes :
T7148 1055-1064 JJ denotes apoptotic
T7149 1065-1070 NNS denotes cells
T7150 1076-1083 JJ denotes present
T7151 1084-1086 IN denotes in
T7152 1087-1092 NN denotes Ptdsr
T7153 1110-1117 NNS denotes embryos
T7154 1092-1093 SYM denotes +
T7155 1093-1094 HYPH denotes /
T7156 1094-1095 SYM denotes +
T7157 1096-1099 CC denotes and
T7158 1100-1105 NN denotes Ptdsr
T7159 1106-1107 SYM denotes -
T7160 1107-1108 HYPH denotes /
T7161 1108-1109 SYM denotes -
T7162 1117-1119 , denotes ,
T7163 1119-1121 IN denotes in
T7164 1122-1129 JJ denotes limited
T7165 1130-1137 NNS denotes numbers
T7166 1137-1139 , denotes ,
T7167 1139-1142 CC denotes but
T7168 1143-1145 PRP denotes we
T7169 1146-1152 VBD denotes failed
T7170 1153-1155 TO denotes to
T7171 1156-1162 VB denotes detect
T7172 1163-1166 DT denotes any
T7173 1167-1178 NNS denotes differences
T7174 1179-1181 IN denotes in
T7175 1182-1185 DT denotes the
T7176 1186-1192 NN denotes number
T7177 1193-1195 IN denotes of
T7178 1196-1205 JJ denotes apoptotic
T7179 1206-1211 NNS denotes cells
T7180 1212-1219 IN denotes between
T7181 1220-1223 DT denotes the
T7182 1224-1233 NNS denotes genotypes
T7183 1234-1235 -LRB- denotes (
T7184 1245-1247 NN denotes 6g
T7185 1235-1241 NN denotes Figure
T7186 1242-1244 NN denotes 6c
T7187 1244-1245 , denotes ,
T7188 1247-1248 -RRB- denotes )
T7189 1248-1249 . denotes .
T7190 1249-1487 sentence denotes Furthermore, when we continued our analysis of apoptotic cell clearance in vivo at E16.5, E17.5 and E18.5 of embryonic development as well as in neonatal mice, the number and distribution of apoptotic cells was similar in both genotypes.
T7191 1250-1261 RB denotes Furthermore
T7192 1457-1460 VBD denotes was
T7193 1261-1263 , denotes ,
T7194 1263-1267 WRB denotes when
T7195 1271-1280 VBD denotes continued
T7196 1268-1270 PRP denotes we
T7197 1281-1284 PRP$ denotes our
T7198 1285-1293 NN denotes analysis
T7199 1294-1296 IN denotes of
T7200 1297-1306 JJ denotes apoptotic
T7201 1307-1311 NN denotes cell
T7202 1312-1321 NN denotes clearance
T7203 1322-1324 FW denotes in
T7204 1325-1329 FW denotes vivo
T7205 1330-1332 IN denotes at
T7206 1333-1338 NN denotes E16.5
T7207 1338-1340 , denotes ,
T7208 1340-1345 NN denotes E17.5
T7209 1346-1349 CC denotes and
T7210 1350-1355 NN denotes E18.5
T7211 1356-1358 IN denotes of
T7212 1359-1368 JJ denotes embryonic
T7213 1369-1380 NN denotes development
T7214 1381-1383 RB denotes as
T7215 1389-1391 IN denotes as
T7216 1384-1388 RB denotes well
T7217 1392-1394 IN denotes in
T7218 1395-1403 JJ denotes neonatal
T7219 1404-1408 NNS denotes mice
T7220 1408-1410 , denotes ,
T7221 1410-1413 DT denotes the
T7222 1414-1420 NN denotes number
T7223 1421-1424 CC denotes and
T7224 1425-1437 NN denotes distribution
T7225 1438-1440 IN denotes of
T7226 1441-1450 JJ denotes apoptotic
T7227 1451-1456 NNS denotes cells
T7228 1461-1468 JJ denotes similar
T7229 1469-1471 IN denotes in
T7230 1472-1476 DT denotes both
T7231 1477-1486 NNS denotes genotypes
T7232 1486-1487 . denotes .
T7233 1487-1722 sentence denotes As already observed at E12.5, analysis of aCasp3-stained sections of the developing thymus, heart, diaphragm, genital ridge, eyes and retina convincingly showed that there was no impairment in apoptotic cell removal in Ptdsr -/- mice.
T7234 1488-1490 IN denotes As
T7235 1499-1507 VBN denotes observed
T7236 1491-1498 RB denotes already
T7237 1642-1648 VBD denotes showed
T7238 1508-1510 IN denotes at
T7239 1511-1516 NN denotes E12.5
T7240 1516-1518 , denotes ,
T7241 1518-1526 NN denotes analysis
T7242 1527-1529 IN denotes of
T7243 1530-1536 NN denotes aCasp3
T7244 1537-1544 VBN denotes stained
T7245 1536-1537 HYPH denotes -
T7246 1545-1553 NNS denotes sections
T7247 1554-1556 IN denotes of
T7248 1557-1560 DT denotes the
T7249 1572-1578 NN denotes thymus
T7250 1561-1571 VBG denotes developing
T7251 1578-1580 , denotes ,
T7252 1580-1585 NN denotes heart
T7253 1585-1587 , denotes ,
T7254 1587-1596 NN denotes diaphragm
T7255 1596-1598 , denotes ,
T7256 1598-1605 JJ denotes genital
T7257 1606-1611 NN denotes ridge
T7258 1611-1613 , denotes ,
T7259 1613-1617 NNS denotes eyes
T7260 1618-1621 CC denotes and
T7261 1622-1628 NN denotes retina
T7262 1629-1641 RB denotes convincingly
T7263 1649-1653 IN denotes that
T7264 1660-1663 VBD denotes was
T7265 1654-1659 EX denotes there
T7266 1664-1666 DT denotes no
T7267 1667-1677 NN denotes impairment
T7268 1678-1680 IN denotes in
T7269 1681-1690 JJ denotes apoptotic
T7270 1696-1703 NN denotes removal
T7271 1691-1695 NN denotes cell
T7272 1704-1706 IN denotes in
T7273 1707-1712 NN denotes Ptdsr
T7274 1717-1721 NNS denotes mice
T7275 1713-1714 SYM denotes -
T7276 1714-1715 HYPH denotes /
T7277 1715-1716 SYM denotes -
T7278 1721-1722 . denotes .
T7279 1722-1957 sentence denotes Moreover, because Li and colleagues [31] reported impaired clearance of dead cells during lung development in Ptdsr-deficient mice, we examined the rate of apoptosis induction and cell clearance in our Ptdsr-knockout mice in the lung.
T7280 1723-1731 RB denotes Moreover
T7281 1858-1866 VBD denotes examined
T7282 1731-1733 , denotes ,
T7283 1733-1740 IN denotes because
T7284 1764-1772 VBD denotes reported
T7285 1741-1743 NNP denotes Li
T7286 1744-1747 CC denotes and
T7287 1748-1758 NNS denotes colleagues
T7288 1759-1760 -LRB- denotes [
T7289 1760-1762 CD denotes 31
T7290 1762-1763 -RRB- denotes ]
T7291 1773-1781 JJ denotes impaired
T7292 1782-1791 NN denotes clearance
T7293 1792-1794 IN denotes of
T7294 1795-1799 JJ denotes dead
T7295 1800-1805 NNS denotes cells
T7296 1806-1812 IN denotes during
T7297 1813-1817 NN denotes lung
T7298 1818-1829 NN denotes development
T7299 1830-1832 IN denotes in
T7300 1833-1838 NN denotes Ptdsr
T7301 1839-1848 JJ denotes deficient
T7302 1838-1839 HYPH denotes -
T7303 1849-1853 NNS denotes mice
T7304 1853-1855 , denotes ,
T7305 1855-1857 PRP denotes we
T7306 1867-1870 DT denotes the
T7307 1871-1875 NN denotes rate
T7308 1876-1878 IN denotes of
T7309 1879-1888 NN denotes apoptosis
T7310 1889-1898 NN denotes induction
T7311 1899-1902 CC denotes and
T7312 1903-1907 NN denotes cell
T7313 1908-1917 NN denotes clearance
T7314 1918-1920 IN denotes in
T7315 1921-1924 PRP$ denotes our
T7316 1940-1944 NNS denotes mice
T7317 1925-1930 NN denotes Ptdsr
T7318 1931-1939 NN denotes knockout
T7319 1930-1931 HYPH denotes -
T7320 1945-1947 IN denotes in
T7321 1948-1951 DT denotes the
T7322 1952-1956 NN denotes lung
T7323 1956-1957 . denotes .
T7324 1957-2142 sentence denotes Analysis of aCasp3-stained lung tissue from Ptdsr+/+ and Ptdsr -/- mice at E17.5 and P0 demonstrated that apoptosis was an extremely rare event during lung morphogenesis at this stage.
T7325 1958-1966 NN denotes Analysis
T7326 2046-2058 VBD denotes demonstrated
T7327 1967-1969 IN denotes of
T7328 1970-1976 NN denotes aCasp3
T7329 1977-1984 VBN denotes stained
T7330 1976-1977 HYPH denotes -
T7331 1990-1996 NN denotes tissue
T7332 1985-1989 NN denotes lung
T7333 1997-2001 IN denotes from
T7334 2002-2007 NN denotes Ptdsr
T7335 2025-2029 NNS denotes mice
T7336 2007-2008 SYM denotes +
T7337 2008-2009 HYPH denotes /
T7338 2009-2010 SYM denotes +
T7339 2011-2014 CC denotes and
T7340 2015-2020 NN denotes Ptdsr
T7341 2021-2022 SYM denotes -
T7342 2022-2023 HYPH denotes /
T7343 2023-2024 SYM denotes -
T7344 2030-2032 IN denotes at
T7345 2033-2038 NN denotes E17.5
T7346 2039-2042 CC denotes and
T7347 2043-2045 NN denotes P0
T7348 2059-2063 IN denotes that
T7349 2074-2077 VBD denotes was
T7350 2064-2073 NN denotes apoptosis
T7351 2078-2080 DT denotes an
T7352 2096-2101 NN denotes event
T7353 2081-2090 RB denotes extremely
T7354 2091-2095 JJ denotes rare
T7355 2102-2108 IN denotes during
T7356 2109-2113 NN denotes lung
T7357 2114-2127 NN denotes morphogenesis
T7358 2128-2130 IN denotes at
T7359 2131-2135 DT denotes this
T7360 2136-2141 NN denotes stage
T7361 2141-2142 . denotes .
T7362 2142-2263 sentence denotes In addition, there were no differences in the number or distribution of apoptotic cells in Ptdsr -/- and Ptdsr +/+ mice.
T7363 2143-2145 IN denotes In
T7364 2162-2166 VBD denotes were
T7365 2146-2154 NN denotes addition
T7366 2154-2156 , denotes ,
T7367 2156-2161 EX denotes there
T7368 2167-2169 DT denotes no
T7369 2170-2181 NNS denotes differences
T7370 2182-2184 IN denotes in
T7371 2185-2188 DT denotes the
T7372 2189-2195 NN denotes number
T7373 2196-2198 CC denotes or
T7374 2199-2211 NN denotes distribution
T7375 2212-2214 IN denotes of
T7376 2215-2224 JJ denotes apoptotic
T7377 2225-2230 NNS denotes cells
T7378 2231-2233 IN denotes in
T7379 2234-2239 NN denotes Ptdsr
T7380 2258-2262 NNS denotes mice
T7381 2240-2241 SYM denotes -
T7382 2241-2242 HYPH denotes /
T7383 2242-2243 SYM denotes -
T7384 2244-2247 CC denotes and
T7385 2248-2253 NN denotes Ptdsr
T7386 2254-2255 SYM denotes +
T7387 2255-2256 HYPH denotes /
T7388 2256-2257 SYM denotes +
T7389 2262-2263 . denotes .
T7390 2263-2369 sentence denotes Furthermore, we were unable to detect any evidence of tissue necrosis in lungs from Ptdsr-deficient mice.
T7391 2264-2275 RB denotes Furthermore
T7392 2280-2284 VBD denotes were
T7393 2275-2277 , denotes ,
T7394 2277-2279 PRP denotes we
T7395 2285-2291 JJ denotes unable
T7396 2292-2294 TO denotes to
T7397 2295-2301 VB denotes detect
T7398 2302-2305 DT denotes any
T7399 2306-2314 NN denotes evidence
T7400 2315-2317 IN denotes of
T7401 2318-2324 NN denotes tissue
T7402 2325-2333 NN denotes necrosis
T7403 2334-2336 IN denotes in
T7404 2337-2342 NNS denotes lungs
T7405 2343-2347 IN denotes from
T7406 2348-2353 NN denotes Ptdsr
T7407 2354-2363 JJ denotes deficient
T7408 2353-2354 HYPH denotes -
T7409 2364-2368 NNS denotes mice
T7410 2368-2369 . denotes .
T7411 2369-2557 sentence denotes In contrast to the report of Li et al. [31], we never observed recruitment of neutrophils or other signs of pulmonary inflammation at any stage of development in our Ptdsr-deficient mice.
T7412 2370-2372 IN denotes In
T7413 2424-2432 VBD denotes observed
T7414 2373-2381 NN denotes contrast
T7415 2382-2384 IN denotes to
T7416 2385-2388 DT denotes the
T7417 2389-2395 NN denotes report
T7418 2396-2398 IN denotes of
T7419 2399-2401 NNP denotes Li
T7420 2402-2404 FW denotes et
T7421 2405-2408 FW denotes al.
T7422 2409-2410 -LRB- denotes [
T7423 2410-2412 CD denotes 31
T7424 2412-2413 -RRB- denotes ]
T7425 2413-2415 , denotes ,
T7426 2415-2417 PRP denotes we
T7427 2418-2423 RB denotes never
T7428 2433-2444 NN denotes recruitment
T7429 2445-2447 IN denotes of
T7430 2448-2459 NNS denotes neutrophils
T7431 2460-2462 CC denotes or
T7432 2463-2468 JJ denotes other
T7433 2469-2474 NNS denotes signs
T7434 2475-2477 IN denotes of
T7435 2478-2487 JJ denotes pulmonary
T7436 2488-2500 NN denotes inflammation
T7437 2501-2503 IN denotes at
T7438 2504-2507 DT denotes any
T7439 2508-2513 NN denotes stage
T7440 2514-2516 IN denotes of
T7441 2517-2528 NN denotes development
T7442 2529-2531 IN denotes in
T7443 2532-2535 PRP$ denotes our
T7444 2552-2556 NNS denotes mice
T7445 2536-2541 NN denotes Ptdsr
T7446 2542-2551 JJ denotes deficient
T7447 2541-2542 HYPH denotes -
T7448 2556-2557 . denotes .
R3800 T6947 T6948 aux To,investigate
R3801 T6948 T6949 advcl investigate,stained
R3802 T6950 T6948 advmod further,investigate
R3803 T6951 T6952 mark whether,impaired
R3804 T6952 T6948 ccomp impaired,investigate
R3805 T6953 T6952 nsubjpass removal,impaired
R3806 T6954 T6953 prep of,removal
R3807 T6955 T6956 amod apoptotic,cells
R3808 T6956 T6954 pobj cells,of
R3809 T6957 T6952 auxpass is,impaired
R3810 T6958 T6952 prep in,impaired
R3811 T6959 T6960 nmod Ptdsr,mice
R3812 T6960 T6958 pobj mice,in
R3813 T6961 T6959 punct -,Ptdsr
R3814 T6962 T6959 punct /,Ptdsr
R3815 T6963 T6959 punct -,Ptdsr
R3816 T6964 T6949 punct ", ",stained
R3817 T6965 T6949 nsubj we,stained
R3818 T6966 T6949 advmod immunohistochemically,stained
R3819 T6967 T6949 prep for,stained
R3820 T6968 T6969 amod activated,caspase
R3821 T6969 T6967 pobj caspase,for
R3822 T6970 T6969 nummod 3,caspase
R3823 T6971 T6969 punct (,caspase
R3824 T6972 T6969 appos aCasp3,caspase
R3825 T6973 T6949 punct ),stained
R3826 T6974 T6949 cc and,stained
R3827 T6975 T6949 conj analyzed,stained
R3828 T6976 T6977 amod additional,organs
R3829 T6977 T6975 dobj organs,analyzed
R3830 T6978 T6977 cc and,organs
R3831 T6979 T6977 conj tissues,organs
R3832 T6980 T6981 advmod where,plays
R3833 T6981 T6977 relcl plays,organs
R3834 T6982 T6981 nsubj apoptosis,plays
R3835 T6983 T6984 det a,role
R3836 T6984 T6981 dobj role,plays
R3837 T6985 T6984 amod crucial,role
R3838 T6986 T6981 prep in,plays
R3839 T6987 T6988 compound tissue,remodeling
R3840 T6988 T6986 pobj remodeling,in
R3841 T6989 T6981 prep during,plays
R3842 T6990 T6989 pobj development,during
R3843 T6991 T6949 punct .,stained
R3844 T6993 T6994 advcl Starting,analyzed
R3845 T6995 T6993 prep at,Starting
R3846 T6996 T6995 pobj E12.5,at
R3847 T6997 T6994 punct ", ",analyzed
R3848 T6998 T6994 nsubj we,analyzed
R3849 T6999 T6994 cc and,analyzed
R3850 T7000 T6994 conj compared,analyzed
R3851 T7001 T7002 det the,number
R3852 T7002 T7000 dobj number,compared
R3853 T7003 T7002 cc and,number
R3854 T7004 T7002 conj distribution,number
R3855 T7005 T7002 prep of,number
R3856 T7006 T7007 npadvmod aCasp3,positive
R3857 T7007 T7009 amod positive,cells
R3858 T7008 T7007 punct -,positive
R3859 T7009 T7005 pobj cells,of
R3860 T7010 T7002 prep in,number
R3861 T7011 T7012 quantmod over,140
R3862 T7012 T7013 nummod 140,sections
R3863 T7013 T7010 pobj sections,in
R3864 T7014 T7013 amod serial,sections
R3865 T7015 T7013 prep of,sections
R3866 T7016 T7017 nummod three,type
R3867 T7017 T7015 pobj type,of
R3868 T7018 T7017 amod wild,type
R3869 T7019 T7017 punct -,type
R3870 T7020 T7017 cc and,type
R3871 T7021 T7022 nummod six,Ptdsr
R3872 T7022 T7023 nmod Ptdsr,embryos
R3873 T7023 T7017 conj embryos,type
R3874 T7024 T7022 punct -,Ptdsr
R3875 T7025 T7022 punct /,Ptdsr
R3876 T7026 T7022 punct -,Ptdsr
R3877 T7027 T7013 prep in,sections
R3878 T7028 T7029 amod consecutive,sections
R3879 T7029 T7027 pobj sections,in
R3880 T7030 T7028 cc and,consecutive
R3881 T7031 T7028 conj corresponding,consecutive
R3882 T7032 T6994 punct .,analyzed
R3883 T7034 T7035 det The,sections
R3884 T7035 T7037 nsubjpass sections,separated
R3885 T7036 T7035 amod sagittal,sections
R3886 T7038 T7037 auxpass were,separated
R3887 T7039 T7037 agent by,separated
R3888 T7040 T7041 nummod 5,μm
R3889 T7041 T7039 pobj μm,by
R3890 T7042 T7037 punct ", ",separated
R3891 T7043 T7037 advcl allowing,separated
R3892 T7044 T7045 det a,analysis
R3893 T7045 T7043 dobj analysis,allowing
R3894 T7046 T7045 amod detailed,analysis
R3895 T7047 T7045 prep of,analysis
R3896 T7048 T7047 pobj apoptosis,of
R3897 T7049 T7045 prep in,analysis
R3898 T7050 T7051 amod several,organs
R3899 T7051 T7049 pobj organs,in
R3900 T7052 T7051 cc and,organs
R3901 T7053 T7051 conj tissues,organs
R3902 T7054 T7037 punct .,separated
R3903 T7056 T7057 compound Tissue,restructuring
R3904 T7057 T7058 nsubj restructuring,occurred
R3905 T7059 T7057 prep by,restructuring
R3906 T7060 T7061 amod programmed,death
R3907 T7061 T7059 pobj death,by
R3908 T7062 T7061 compound cell,death
R3909 T7063 T7064 advmod most,notably
R3910 T7064 T7065 advmod notably,within
R3911 T7065 T7058 prep within,occurred
R3912 T7066 T7067 det the,part
R3913 T7067 T7065 pobj part,within
R3914 T7068 T7067 amod ventral,part
R3915 T7069 T7067 prep of,part
R3916 T7070 T7071 det the,tube
R3917 T7071 T7069 pobj tube,of
R3918 T7072 T7071 amod neural,tube
R3919 T7073 T7074 punct (,f
R3920 T7074 T7071 parataxis f,tube
R3921 T7075 T7074 nmod Figure,f
R3922 T7076 T7074 nmod 6b,f
R3923 T7077 T7074 punct ",",f
R3924 T7078 T7074 punct ),f
R3925 T7079 T7065 cc and,within
R3926 T7080 T7065 conj in,within
R3927 T7081 T7082 det the,ganglia
R3928 T7082 T7080 pobj ganglia,in
R3929 T7083 T7082 amod developing,ganglia
R3930 T7084 T7082 amod paravertebral,ganglia
R3931 T7085 T7086 punct (,h
R3932 T7086 T7082 parataxis h,ganglia
R3933 T7087 T7086 nmod Figure,h
R3934 T7088 T7086 nmod 6d,h
R3935 T7089 T7086 punct ",",h
R3936 T7090 T7086 punct ),h
R3937 T7091 T7058 prep with,occurred
R3938 T7092 T7093 amod many,cells
R3939 T7093 T7095 nsubj cells,being
R3940 T7094 T7093 amod apoptotic,cells
R3941 T7095 T7091 pcomp being,with
R3942 T7096 T7095 acomp present,being
R3943 T7097 T7058 punct .,occurred
R3944 T7099 T7100 prep In,is
R3945 T7101 T7102 det these,tissues
R3946 T7102 T7099 pobj tissues,In
R3947 T7103 T7100 nsubj Ptdsr,is
R3948 T7104 T7105 advmod highly,expressed
R3949 T7105 T7100 acomp expressed,is
R3950 T7106 T7100 prep at,is
R3951 T7107 T7106 pobj E12.5,at
R3952 T7108 T7109 punct (,2c
R3953 T7109 T7107 parataxis 2c,E12.5
R3954 T7110 T7109 compound Figure,2c
R3955 T7111 T7109 punct ),2c
R3956 T7112 T7100 cc but,is
R3957 T7113 T7114 nsubj we,observed
R3958 T7114 T7100 conj observed,is
R3959 T7115 T7116 det no,difference
R3960 T7116 T7114 dobj difference,observed
R3961 T7117 T7116 prep in,difference
R3962 T7118 T7119 det the,number
R3963 T7119 T7117 pobj number,in
R3964 T7120 T7119 cc or,number
R3965 T7121 T7119 conj distribution,number
R3966 T7122 T7119 prep of,number
R3967 T7123 T7124 amod apoptotic,cells
R3968 T7124 T7122 pobj cells,of
R3969 T7125 T7116 prep in,difference
R3970 T7126 T7127 nmod Ptdsr,embryos
R3971 T7127 T7125 pobj embryos,in
R3972 T7128 T7126 punct +,Ptdsr
R3973 T7129 T7126 punct /,Ptdsr
R3974 T7130 T7126 punct +,Ptdsr
R3975 T7131 T7126 cc and,Ptdsr
R3976 T7132 T7126 conj Ptdsr,Ptdsr
R3977 T7133 T7132 punct -,Ptdsr
R3978 T7134 T7132 punct /,Ptdsr
R3979 T7135 T7132 punct -,Ptdsr
R3980 T7136 T7114 punct .,observed
R3981 T7138 T7139 det The,same
R3982 T7139 T7140 nsubj same,was
R3983 T7140 T7141 ccomp was,were
R3984 T7142 T7140 acomp true,was
R3985 T7143 T7140 prep for,was
R3986 T7144 T7145 det the,kidney
R3987 T7145 T7143 pobj kidney,for
R3988 T7146 T7145 amod developing,kidney
R3989 T7147 T7141 punct : ,were
R3990 T7148 T7149 amod apoptotic,cells
R3991 T7149 T7141 nsubj cells,were
R3992 T7150 T7141 acomp present,were
R3993 T7151 T7141 prep in,were
R3994 T7152 T7153 nmod Ptdsr,embryos
R3995 T7153 T7151 pobj embryos,in
R3996 T7154 T7152 punct +,Ptdsr
R3997 T7155 T7152 punct /,Ptdsr
R3998 T7156 T7152 punct +,Ptdsr
R3999 T7157 T7152 cc and,Ptdsr
R4000 T7158 T7152 conj Ptdsr,Ptdsr
R4001 T7159 T7158 punct -,Ptdsr
R4002 T7160 T7158 punct /,Ptdsr
R4003 T7161 T7158 punct -,Ptdsr
R4004 T7162 T7141 punct ", ",were
R4005 T7163 T7141 prep in,were
R4006 T7164 T7165 amod limited,numbers
R4007 T7165 T7163 pobj numbers,in
R4008 T7166 T7141 punct ", ",were
R4009 T7167 T7141 cc but,were
R4010 T7168 T7169 nsubj we,failed
R4011 T7169 T7141 conj failed,were
R4012 T7170 T7171 aux to,detect
R4013 T7171 T7169 xcomp detect,failed
R4014 T7172 T7173 det any,differences
R4015 T7173 T7171 dobj differences,detect
R4016 T7174 T7173 prep in,differences
R4017 T7175 T7176 det the,number
R4018 T7176 T7174 pobj number,in
R4019 T7177 T7176 prep of,number
R4020 T7178 T7179 amod apoptotic,cells
R4021 T7179 T7177 pobj cells,of
R4022 T7180 T7176 prep between,number
R4023 T7181 T7182 det the,genotypes
R4024 T7182 T7180 pobj genotypes,between
R4025 T7183 T7184 punct (,6g
R4026 T7184 T7169 parataxis 6g,failed
R4027 T7185 T7184 nmod Figure,6g
R4028 T7186 T7184 nmod 6c,6g
R4029 T7187 T7184 punct ",",6g
R4030 T7188 T7184 punct ),6g
R4031 T7189 T7141 punct .,were
R4032 T7191 T7192 advmod Furthermore,was
R4033 T7193 T7192 punct ", ",was
R4034 T7194 T7195 advmod when,continued
R4035 T7195 T7192 advcl continued,was
R4036 T7196 T7195 nsubj we,continued
R4037 T7197 T7198 poss our,analysis
R4038 T7198 T7195 dobj analysis,continued
R4039 T7199 T7198 prep of,analysis
R4040 T7200 T7201 amod apoptotic,cell
R4041 T7201 T7202 compound cell,clearance
R4042 T7202 T7199 pobj clearance,of
R4043 T7203 T7204 advmod in,vivo
R4044 T7204 T7198 advmod vivo,analysis
R4045 T7205 T7195 prep at,continued
R4046 T7206 T7205 pobj E16.5,at
R4047 T7207 T7206 punct ", ",E16.5
R4048 T7208 T7206 conj E17.5,E16.5
R4049 T7209 T7208 cc and,E17.5
R4050 T7210 T7208 conj E18.5,E17.5
R4051 T7211 T7206 prep of,E16.5
R4052 T7212 T7213 amod embryonic,development
R4053 T7213 T7211 pobj development,of
R4054 T7214 T7215 advmod as,as
R4055 T7215 T7205 cc as,at
R4056 T7216 T7215 advmod well,as
R4057 T7217 T7205 conj in,at
R4058 T7218 T7219 amod neonatal,mice
R4059 T7219 T7217 pobj mice,in
R4060 T7220 T7192 punct ", ",was
R4061 T7221 T7222 det the,number
R4062 T7222 T7192 nsubj number,was
R4063 T7223 T7222 cc and,number
R4064 T7224 T7222 conj distribution,number
R4065 T7225 T7222 prep of,number
R4066 T7226 T7227 amod apoptotic,cells
R4067 T7227 T7225 pobj cells,of
R4068 T7228 T7192 acomp similar,was
R4069 T7229 T7192 prep in,was
R4070 T7230 T7231 det both,genotypes
R4071 T7231 T7229 pobj genotypes,in
R4072 T7232 T7192 punct .,was
R4073 T7234 T7235 mark As,observed
R4074 T7235 T7237 advcl observed,showed
R4075 T7236 T7235 advmod already,observed
R4076 T7238 T7235 prep at,observed
R4077 T7239 T7238 pobj E12.5,at
R4078 T7240 T7237 punct ", ",showed
R4079 T7241 T7237 nsubj analysis,showed
R4080 T7242 T7241 prep of,analysis
R4081 T7243 T7244 npadvmod aCasp3,stained
R4082 T7244 T7246 amod stained,sections
R4083 T7245 T7244 punct -,stained
R4084 T7246 T7242 pobj sections,of
R4085 T7247 T7246 prep of,sections
R4086 T7248 T7249 det the,thymus
R4087 T7249 T7247 pobj thymus,of
R4088 T7250 T7249 amod developing,thymus
R4089 T7251 T7249 punct ", ",thymus
R4090 T7252 T7249 conj heart,thymus
R4091 T7253 T7252 punct ", ",heart
R4092 T7254 T7252 conj diaphragm,heart
R4093 T7255 T7254 punct ", ",diaphragm
R4094 T7256 T7257 amod genital,ridge
R4095 T7257 T7254 conj ridge,diaphragm
R4096 T7258 T7257 punct ", ",ridge
R4097 T7259 T7257 conj eyes,ridge
R4098 T7260 T7259 cc and,eyes
R4099 T7261 T7259 conj retina,eyes
R4100 T7262 T7237 advmod convincingly,showed
R4101 T7263 T7264 mark that,was
R4102 T7264 T7237 ccomp was,showed
R4103 T7265 T7264 expl there,was
R4104 T7266 T7267 det no,impairment
R4105 T7267 T7264 attr impairment,was
R4106 T7268 T7267 prep in,impairment
R4107 T7269 T7270 amod apoptotic,removal
R4108 T7270 T7268 pobj removal,in
R4109 T7271 T7270 compound cell,removal
R4110 T7272 T7264 prep in,was
R4111 T7273 T7274 nmod Ptdsr,mice
R4112 T7274 T7272 pobj mice,in
R4113 T7275 T7273 punct -,Ptdsr
R4114 T7276 T7273 punct /,Ptdsr
R4115 T7277 T7273 punct -,Ptdsr
R4116 T7278 T7237 punct .,showed
R4117 T7280 T7281 advmod Moreover,examined
R4118 T7282 T7281 punct ", ",examined
R4119 T7283 T7284 mark because,reported
R4120 T7284 T7281 advcl reported,examined
R4121 T7285 T7284 nsubj Li,reported
R4122 T7286 T7285 cc and,Li
R4123 T7287 T7285 conj colleagues,Li
R4124 T7288 T7289 punct [,31
R4125 T7289 T7287 parataxis 31,colleagues
R4126 T7290 T7289 punct ],31
R4127 T7291 T7292 amod impaired,clearance
R4128 T7292 T7284 dobj clearance,reported
R4129 T7293 T7292 prep of,clearance
R4130 T7294 T7295 amod dead,cells
R4131 T7295 T7293 pobj cells,of
R4132 T7296 T7292 prep during,clearance
R4133 T7297 T7298 compound lung,development
R4134 T7298 T7296 pobj development,during
R4135 T7299 T7292 prep in,clearance
R4136 T7300 T7301 npadvmod Ptdsr,deficient
R4137 T7301 T7303 amod deficient,mice
R4138 T7302 T7301 punct -,deficient
R4139 T7303 T7299 pobj mice,in
R4140 T7304 T7281 punct ", ",examined
R4141 T7305 T7281 nsubj we,examined
R4142 T7306 T7307 det the,rate
R4143 T7307 T7281 dobj rate,examined
R4144 T7308 T7307 prep of,rate
R4145 T7309 T7310 compound apoptosis,induction
R4146 T7310 T7308 pobj induction,of
R4147 T7311 T7310 cc and,induction
R4148 T7312 T7313 compound cell,clearance
R4149 T7313 T7310 conj clearance,induction
R4150 T7314 T7307 prep in,rate
R4151 T7315 T7316 poss our,mice
R4152 T7316 T7314 pobj mice,in
R4153 T7317 T7318 compound Ptdsr,knockout
R4154 T7318 T7316 compound knockout,mice
R4155 T7319 T7318 punct -,knockout
R4156 T7320 T7307 prep in,rate
R4157 T7321 T7322 det the,lung
R4158 T7322 T7320 pobj lung,in
R4159 T7323 T7281 punct .,examined
R4160 T7325 T7326 nsubj Analysis,demonstrated
R4161 T7327 T7325 prep of,Analysis
R4162 T7328 T7329 npadvmod aCasp3,stained
R4163 T7329 T7331 amod stained,tissue
R4164 T7330 T7329 punct -,stained
R4165 T7331 T7327 pobj tissue,of
R4166 T7332 T7331 compound lung,tissue
R4167 T7333 T7325 prep from,Analysis
R4168 T7334 T7335 nmod Ptdsr,mice
R4169 T7335 T7333 pobj mice,from
R4170 T7336 T7334 punct +,Ptdsr
R4171 T7337 T7334 punct /,Ptdsr
R4172 T7338 T7334 punct +,Ptdsr
R4173 T7339 T7334 cc and,Ptdsr
R4174 T7340 T7334 conj Ptdsr,Ptdsr
R4175 T7341 T7340 punct -,Ptdsr
R4176 T7342 T7340 punct /,Ptdsr
R4177 T7343 T7340 punct -,Ptdsr
R4178 T7344 T7335 prep at,mice
R4179 T7345 T7344 pobj E17.5,at
R4180 T7346 T7345 cc and,E17.5
R4181 T7347 T7345 conj P0,E17.5
R4182 T7348 T7349 mark that,was
R4183 T7349 T7326 ccomp was,demonstrated
R4184 T7350 T7349 nsubj apoptosis,was
R4185 T7351 T7352 det an,event
R4186 T7352 T7349 attr event,was
R4187 T7353 T7354 advmod extremely,rare
R4188 T7354 T7352 amod rare,event
R4189 T7355 T7349 prep during,was
R4190 T7356 T7357 compound lung,morphogenesis
R4191 T7357 T7355 pobj morphogenesis,during
R4192 T7358 T7349 prep at,was
R4193 T7359 T7360 det this,stage
R4194 T7360 T7358 pobj stage,at
R4195 T7361 T7326 punct .,demonstrated
R4196 T7363 T7364 prep In,were
R4197 T7365 T7363 pobj addition,In
R4198 T7366 T7364 punct ", ",were
R4199 T7367 T7364 expl there,were
R4200 T7368 T7369 det no,differences
R4201 T7369 T7364 attr differences,were
R4202 T7370 T7369 prep in,differences
R4203 T7371 T7372 det the,number
R4204 T7372 T7370 pobj number,in
R4205 T7373 T7372 cc or,number
R4206 T7374 T7372 conj distribution,number
R4207 T7375 T7372 prep of,number
R4208 T7376 T7377 amod apoptotic,cells
R4209 T7377 T7375 pobj cells,of
R4210 T7378 T7369 prep in,differences
R4211 T7379 T7380 nmod Ptdsr,mice
R4212 T7380 T7378 pobj mice,in
R4213 T7381 T7379 punct -,Ptdsr
R4214 T7382 T7379 punct /,Ptdsr
R4215 T7383 T7379 punct -,Ptdsr
R4216 T7384 T7379 cc and,Ptdsr
R4217 T7385 T7379 conj Ptdsr,Ptdsr
R4218 T7386 T7385 punct +,Ptdsr
R4219 T7387 T7385 punct /,Ptdsr
R4220 T7388 T7385 punct +,Ptdsr
R4221 T7389 T7364 punct .,were
R4222 T7391 T7392 advmod Furthermore,were
R4223 T7393 T7392 punct ", ",were
R4224 T7394 T7392 nsubj we,were
R4225 T7395 T7392 acomp unable,were
R4226 T7396 T7397 aux to,detect
R4227 T7397 T7395 xcomp detect,unable
R4228 T7398 T7399 det any,evidence
R4229 T7399 T7397 dobj evidence,detect
R4230 T7400 T7399 prep of,evidence
R4231 T7401 T7402 compound tissue,necrosis
R4232 T7402 T7400 pobj necrosis,of
R4233 T7403 T7397 prep in,detect
R4234 T7404 T7403 pobj lungs,in
R4235 T7405 T7404 prep from,lungs
R4236 T7406 T7407 npadvmod Ptdsr,deficient
R4237 T7407 T7409 amod deficient,mice
R4238 T7408 T7407 punct -,deficient
R4239 T7409 T7405 pobj mice,from
R4240 T7410 T7392 punct .,were
R4241 T7412 T7413 prep In,observed
R4242 T7414 T7412 pobj contrast,In
R4243 T7415 T7414 prep to,contrast
R4244 T7416 T7417 det the,report
R4245 T7417 T7415 pobj report,to
R4246 T7418 T7417 prep of,report
R4247 T7419 T7418 pobj Li,of
R4248 T7420 T7421 advmod et,al.
R4249 T7421 T7419 advmod al.,Li
R4250 T7422 T7423 punct [,31
R4251 T7423 T7414 parataxis 31,contrast
R4252 T7424 T7423 punct ],31
R4253 T7425 T7413 punct ", ",observed
R4254 T7426 T7413 nsubj we,observed
R4255 T7427 T7413 neg never,observed
R4256 T7428 T7413 dobj recruitment,observed
R4257 T7429 T7428 prep of,recruitment
R4258 T7430 T7429 pobj neutrophils,of
R4259 T7431 T7428 cc or,recruitment
R4260 T7432 T7433 amod other,signs
R4261 T7433 T7428 conj signs,recruitment
R4262 T7434 T7433 prep of,signs
R4263 T7435 T7436 amod pulmonary,inflammation
R4264 T7436 T7434 pobj inflammation,of
R4265 T7437 T7413 prep at,observed
R4266 T7438 T7439 det any,stage
R4267 T7439 T7437 pobj stage,at
R4268 T7440 T7439 prep of,stage
R4269 T7441 T7440 pobj development,of
R4270 T7442 T7413 prep in,observed
R4271 T7443 T7444 poss our,mice
R4272 T7444 T7442 pobj mice,in
R4273 T7445 T7446 npadvmod Ptdsr,deficient
R4274 T7446 T7444 amod deficient,mice
R4275 T7447 T7446 punct -,deficient
R4276 T7448 T7413 punct .,observed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6491 31-57 GO:0043277 denotes removal of apoptotic cells
T6492 42-57 CL:0000445 denotes apoptotic cells
T6493 52-57 CL_GO_EXT:cell denotes cells
T6494 73-78 PR_EXT:000009218 denotes Ptdsr
T6495 79-80 SO_EXT:sequence_nullness_or_absence denotes -
T6496 81-82 SO_EXT:sequence_nullness_or_absence denotes -
T6497 83-87 NCBITaxon:10088 denotes mice
T6498 126-145 PR:000026878 denotes activated caspase 3
T6499 147-153 PR:000026878 denotes aCasp3
T6500 179-185 UBERON:0000062 denotes organs
T6501 190-197 UBERON:0000479 denotes tissues
T6502 204-213 GO:0006915 denotes apoptosis
T6503 238-244 UBERON:0000479 denotes tissue
T6504 238-255 GO:0048771 denotes tissue remodeling
T6505 351-357 PR:000026878 denotes aCasp3
T6506 367-372 CL_GO_EXT:cell denotes cells
T6507 410-419 SO_EXT:wild_type_entity_or_quality denotes wild-type
T6508 428-433 PR_EXT:000009218 denotes Ptdsr
T6509 434-435 SO_EXT:sequence_nullness_or_absence denotes -
T6510 436-437 SO_EXT:sequence_nullness_or_absence denotes -
T6511 438-445 UBERON:0000922 denotes embryos
T6512 567-576 GO:0006915 denotes apoptosis
T6513 588-594 UBERON:0000062 denotes organs
T6514 599-606 UBERON:0000479 denotes tissues
T6515 608-614 UBERON:0000479 denotes Tissue
T6516 608-628 GO:0048771 denotes Tissue restructuring
T6517 632-653 GO:0012501 denotes programmed cell death
T6518 643-647 CL_GO_EXT:cell denotes cell
T6519 707-718 UBERON:0001049 denotes neural tube
T6520 755-776 UBERON:0001807 denotes paravertebral ganglia
T6521 801-810 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6522 801-816 CL:0000445 denotes apoptotic cells
T6523 811-816 CL_GO_EXT:cell denotes cells
T6524 841-848 UBERON:0000479 denotes tissues
T6525 849-854 PR_EXT:000009218 denotes Ptdsr
T6526 865-874 GO:0010467 denotes expressed
T6527 959-968 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6528 959-974 CL:0000445 denotes apoptotic cells
T6529 969-974 CL_GO_EXT:cell denotes cells
T6530 978-983 PR_EXT:000009218 denotes Ptdsr
T6531 983-984 SO_EXT:normal_or_wild_type_or_present denotes +
T6532 985-986 SO_EXT:normal_or_wild_type_or_present denotes +
T6533 991-996 PR_EXT:000009218 denotes Ptdsr
T6534 997-998 SO_EXT:sequence_nullness_or_absence denotes -
T6535 999-1000 SO_EXT:sequence_nullness_or_absence denotes -
T6536 1001-1008 UBERON:0000922 denotes embryos
T6537 1047-1053 UBERON:0002113 denotes kidney
T6538 1055-1064 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6539 1055-1070 CL:0000445 denotes apoptotic cells
T6540 1065-1070 CL_GO_EXT:cell denotes cells
T6541 1087-1092 PR_EXT:000009218 denotes Ptdsr
T6542 1092-1093 SO_EXT:normal_or_wild_type_or_present denotes +
T6543 1094-1095 SO_EXT:normal_or_wild_type_or_present denotes +
T6544 1100-1105 PR_EXT:000009218 denotes Ptdsr
T6545 1106-1107 SO_EXT:sequence_nullness_or_absence denotes -
T6546 1108-1109 SO_EXT:sequence_nullness_or_absence denotes -
T6547 1110-1117 UBERON:0000922 denotes embryos
T6548 1196-1205 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6549 1196-1211 CL:0000445 denotes apoptotic cells
T6550 1206-1211 CL_GO_EXT:cell denotes cells
T6551 1224-1233 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T6552 1297-1311 CL:0000445 denotes apoptotic cell
T6553 1297-1321 GO:0043277 denotes apoptotic cell clearance
T6554 1307-1311 CL_GO_EXT:cell denotes cell
T6555 1359-1368 UBERON:0000922 denotes embryonic
T6556 1359-1380 GO:0009790 denotes embryonic development
T6557 1395-1403 PATO_UBERON_EXT:neonate_or_newborn denotes neonatal
T6558 1404-1408 NCBITaxon:10088 denotes mice
T6559 1441-1450 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6560 1441-1456 CL:0000445 denotes apoptotic cells
T6561 1451-1456 CL_GO_EXT:cell denotes cells
T6562 1477-1486 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T6563 1530-1536 PR:000026878 denotes aCasp3
T6564 1572-1578 UBERON:0002370 denotes thymus
T6565 1580-1585 UBERON:0000948 denotes heart
T6566 1587-1596 UBERON:0001103 denotes diaphragm
T6567 1598-1611 UBERON:0005294 denotes genital ridge
T6568 1613-1617 UBERON:0000970 denotes eyes
T6569 1622-1628 UBERON:0000966 denotes retina
T6570 1681-1695 CL:0000445 denotes apoptotic cell
T6571 1681-1703 GO:0043277 denotes apoptotic cell removal
T6572 1691-1695 CL_GO_EXT:cell denotes cell
T6573 1707-1712 PR_EXT:000009218 denotes Ptdsr
T6574 1713-1714 SO_EXT:sequence_nullness_or_absence denotes -
T6575 1715-1716 SO_EXT:sequence_nullness_or_absence denotes -
T6576 1717-1721 NCBITaxon:10088 denotes mice
T6577 1782-1805 GO:0043277 denotes clearance of dead cells
T6578 1800-1805 CL_GO_EXT:cell denotes cells
T6579 1813-1817 UBERON:0002048 denotes lung
T6580 1813-1829 GO:0030324 denotes lung development
T6581 1833-1838 PR_EXT:000009218 denotes Ptdsr
T6582 1849-1853 NCBITaxon:10088 denotes mice
T6583 1879-1888 GO:0006915 denotes apoptosis
T6584 1903-1907 CL_GO_EXT:cell denotes cell
T6585 1903-1917 GO:0043277 denotes cell clearance
T6586 1925-1930 PR_EXT:000009218 denotes Ptdsr
T6587 1940-1944 NCBITaxon:10088 denotes mice
T6588 1952-1956 UBERON:0002048 denotes lung
T6589 1970-1976 PR:000026878 denotes aCasp3
T6590 1985-1989 UBERON:0002048 denotes lung
T6591 1990-1996 UBERON:0000479 denotes tissue
T6592 2002-2007 PR_EXT:000009218 denotes Ptdsr
T6593 2007-2008 SO_EXT:normal_or_wild_type_or_present denotes +
T6594 2009-2010 SO_EXT:normal_or_wild_type_or_present denotes +
T6595 2015-2020 PR_EXT:000009218 denotes Ptdsr
T6596 2021-2022 SO_EXT:sequence_nullness_or_absence denotes -
T6597 2023-2024 SO_EXT:sequence_nullness_or_absence denotes -
T6598 2025-2029 NCBITaxon:10088 denotes mice
T6599 2064-2073 GO:0006915 denotes apoptosis
T6600 2109-2113 UBERON:0002048 denotes lung
T6601 2109-2127 GO:0060425 denotes lung morphogenesis
T6602 2215-2224 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6603 2215-2230 CL:0000445 denotes apoptotic cells
T6604 2225-2230 CL_GO_EXT:cell denotes cells
T6605 2234-2239 PR_EXT:000009218 denotes Ptdsr
T6606 2240-2241 SO_EXT:sequence_nullness_or_absence denotes -
T6607 2242-2243 SO_EXT:sequence_nullness_or_absence denotes -
T6608 2248-2253 PR_EXT:000009218 denotes Ptdsr
T6609 2254-2255 SO_EXT:normal_or_wild_type_or_present denotes +
T6610 2256-2257 SO_EXT:normal_or_wild_type_or_present denotes +
T6611 2258-2262 NCBITaxon:10088 denotes mice
T6612 2318-2324 UBERON:0000479 denotes tissue
T6613 2325-2333 GO_PATO_EXT:necrosis denotes necrosis
T6614 2337-2342 UBERON:0002048 denotes lungs
T6615 2348-2353 PR_EXT:000009218 denotes Ptdsr
T6616 2364-2368 NCBITaxon:10088 denotes mice
T6617 2433-2444 GO_EXT:biological_recruitment denotes recruitment
T6618 2448-2459 CL:0000775 denotes neutrophils
T6619 2478-2487 UBERON:0002048 denotes pulmonary
T6620 2488-2500 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T6621 2536-2541 PR_EXT:000009218 denotes Ptdsr
T6622 2552-2556 NCBITaxon:10088 denotes mice

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6279 31-57 GO:0043277 denotes removal of apoptotic cells
T6280 42-57 CL:0000445 denotes apoptotic cells
T6281 73-78 PR:000009218 denotes Ptdsr
T6282 83-87 NCBITaxon:10088 denotes mice
T6283 126-145 PR:000026878 denotes activated caspase 3
T6284 147-153 PR:000026878 denotes aCasp3
T6285 179-185 UBERON:0000062 denotes organs
T6286 190-197 UBERON:0000479 denotes tissues
T6287 204-213 GO:0006915 denotes apoptosis
T6288 238-244 UBERON:0000479 denotes tissue
T6289 238-255 GO:0048771 denotes tissue remodeling
T6290 351-357 PR:000026878 denotes aCasp3
T6291 428-433 PR:000009218 denotes Ptdsr
T6292 438-445 UBERON:0000922 denotes embryos
T6293 567-576 GO:0006915 denotes apoptosis
T6294 588-594 UBERON:0000062 denotes organs
T6295 599-606 UBERON:0000479 denotes tissues
T6296 608-614 UBERON:0000479 denotes Tissue
T6297 608-628 GO:0048771 denotes Tissue restructuring
T6298 632-653 GO:0012501 denotes programmed cell death
T6299 707-718 UBERON:0001049 denotes neural tube
T6300 755-776 UBERON:0001807 denotes paravertebral ganglia
T6301 801-816 CL:0000445 denotes apoptotic cells
T6302 841-848 UBERON:0000479 denotes tissues
T6303 849-854 PR:000009218 denotes Ptdsr
T6304 865-874 GO:0010467 denotes expressed
T6305 959-974 CL:0000445 denotes apoptotic cells
T6306 978-983 PR:000009218 denotes Ptdsr
T6307 991-996 PR:000009218 denotes Ptdsr
T6308 1001-1008 UBERON:0000922 denotes embryos
T6309 1047-1053 UBERON:0002113 denotes kidney
T6310 1055-1070 CL:0000445 denotes apoptotic cells
T6311 1087-1092 PR:000009218 denotes Ptdsr
T6312 1100-1105 PR:000009218 denotes Ptdsr
T6313 1110-1117 UBERON:0000922 denotes embryos
T6314 1196-1211 CL:0000445 denotes apoptotic cells
T6315 1297-1311 CL:0000445 denotes apoptotic cell
T6316 1297-1321 GO:0043277 denotes apoptotic cell clearance
T6317 1359-1368 UBERON:0000922 denotes embryonic
T6318 1359-1380 GO:0009790 denotes embryonic development
T6319 1404-1408 NCBITaxon:10088 denotes mice
T6320 1441-1456 CL:0000445 denotes apoptotic cells
T6321 1530-1536 PR:000026878 denotes aCasp3
T6322 1572-1578 UBERON:0002370 denotes thymus
T6323 1580-1585 UBERON:0000948 denotes heart
T6324 1587-1596 UBERON:0001103 denotes diaphragm
T6325 1598-1611 UBERON:0005294 denotes genital ridge
T6326 1613-1617 UBERON:0000970 denotes eyes
T6327 1622-1628 UBERON:0000966 denotes retina
T6328 1681-1695 CL:0000445 denotes apoptotic cell
T6329 1681-1703 GO:0043277 denotes apoptotic cell removal
T6330 1707-1712 PR:000009218 denotes Ptdsr
T6331 1717-1721 NCBITaxon:10088 denotes mice
T6332 1782-1805 GO:0043277 denotes clearance of dead cells
T6333 1813-1817 UBERON:0002048 denotes lung
T6334 1813-1829 GO:0030324 denotes lung development
T6335 1833-1838 PR:000009218 denotes Ptdsr
T6336 1849-1853 NCBITaxon:10088 denotes mice
T6337 1879-1888 GO:0006915 denotes apoptosis
T6338 1903-1917 GO:0043277 denotes cell clearance
T6339 1925-1930 PR:000009218 denotes Ptdsr
T6340 1940-1944 NCBITaxon:10088 denotes mice
T6341 1952-1956 UBERON:0002048 denotes lung
T6342 1970-1976 PR:000026878 denotes aCasp3
T6343 1985-1989 UBERON:0002048 denotes lung
T6344 1990-1996 UBERON:0000479 denotes tissue
T6345 2002-2007 PR:000009218 denotes Ptdsr
T6346 2015-2020 PR:000009218 denotes Ptdsr
T6347 2025-2029 NCBITaxon:10088 denotes mice
T6348 2064-2073 GO:0006915 denotes apoptosis
T6349 2109-2113 UBERON:0002048 denotes lung
T6350 2109-2127 GO:0060425 denotes lung morphogenesis
T6351 2215-2230 CL:0000445 denotes apoptotic cells
T6352 2234-2239 PR:000009218 denotes Ptdsr
T6353 2248-2253 PR:000009218 denotes Ptdsr
T6354 2258-2262 NCBITaxon:10088 denotes mice
T6355 2318-2324 UBERON:0000479 denotes tissue
T6356 2337-2342 UBERON:0002048 denotes lungs
T6357 2348-2353 PR:000009218 denotes Ptdsr
T6358 2364-2368 NCBITaxon:10088 denotes mice
T6359 2448-2459 CL:0000775 denotes neutrophils
T6360 2478-2487 UBERON:0002048 denotes pulmonary
T6361 2536-2541 PR:000009218 denotes Ptdsr
T6362 2552-2556 NCBITaxon:10088 denotes mice

2_test

Id Subject Object Predicate Lexical cue
15345036-14645847-55938509 1760-1762 14645847 denotes 31
15345036-14645847-55938510 2410-2412 14645847 denotes 31