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PMC:549712 / 20479-21461 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6760 0-2 PRP denotes We
T6761 8-14 VBD denotes tested
T6762 3-7 RB denotes next
T6763 15-22 IN denotes whether
T6764 45-53 VBN denotes required
T6765 23-28 NN denotes Ptdsr
T6766 29-31 VBZ denotes is
T6767 32-44 RB denotes functionally
T6768 54-57 IN denotes for
T6769 58-61 DT denotes the
T6770 62-71 NN denotes clearance
T6771 72-74 IN denotes of
T6772 75-84 JJ denotes apoptotic
T6773 85-90 NNS denotes cells
T6774 90-91 . denotes .
T6775 91-197 sentence denotes We started with an investigation of cell death in vivo in the interdigital areas of the developing limbs.
T6776 92-94 PRP denotes We
T6777 95-102 VBD denotes started
T6778 103-107 IN denotes with
T6779 108-110 DT denotes an
T6780 111-124 NN denotes investigation
T6781 125-127 IN denotes of
T6782 128-132 NN denotes cell
T6783 133-138 NN denotes death
T6784 139-141 FW denotes in
T6785 142-146 FW denotes vivo
T6786 147-149 IN denotes in
T6787 150-153 DT denotes the
T6788 167-172 NNS denotes areas
T6789 154-166 JJ denotes interdigital
T6790 173-175 IN denotes of
T6791 176-179 DT denotes the
T6792 191-196 NNS denotes limbs
T6793 180-190 VBG denotes developing
T6794 196-197 . denotes .
T6795 197-454 sentence denotes Apoptosis of interdigital cells in the distal mesenchyme of limb buds occurs most prominently from developmental stages E12.0 to E13.5 and can be easily examined in situ by whole-mount terminal deoxynucleotide transferase-mediated UTP end-labeling (TUNEL).
T6796 198-207 NN denotes Apoptosis
T6797 268-274 VBZ denotes occurs
T6798 208-210 IN denotes of
T6799 211-223 JJ denotes interdigital
T6800 224-229 NNS denotes cells
T6801 230-232 IN denotes in
T6802 233-236 DT denotes the
T6803 244-254 NN denotes mesenchyme
T6804 237-243 JJ denotes distal
T6805 255-257 IN denotes of
T6806 258-262 NN denotes limb
T6807 263-267 NNS denotes buds
T6808 275-279 RBS denotes most
T6809 280-291 RB denotes prominently
T6810 292-296 IN denotes from
T6811 297-310 JJ denotes developmental
T6812 318-323 NN denotes E12.0
T6813 311-317 NNS denotes stages
T6814 324-326 IN denotes to
T6815 327-332 NN denotes E13.5
T6816 333-336 CC denotes and
T6817 337-340 MD denotes can
T6818 351-359 VBN denotes examined
T6819 341-343 VB denotes be
T6820 344-350 RB denotes easily
T6821 360-362 FW denotes in
T6822 363-367 FW denotes situ
T6823 368-370 IN denotes by
T6824 371-376 JJ denotes whole
T6825 377-382 NN denotes mount
T6826 376-377 HYPH denotes -
T6827 433-436 NN denotes end
T6828 383-391 JJ denotes terminal
T6829 392-407 NN denotes deoxynucleotide
T6830 408-419 NN denotes transferase
T6831 420-428 VBN denotes mediated
T6832 419-420 HYPH denotes -
T6833 429-432 NN denotes UTP
T6834 436-437 HYPH denotes -
T6835 437-445 VBG denotes labeling
T6836 446-447 -LRB- denotes (
T6837 447-452 NN denotes TUNEL
T6838 452-453 -RRB- denotes )
T6839 453-454 . denotes .
T6840 454-602 sentence denotes We compared the pattern of interdigital cell death in fore and hind limb buds from Ptdsr -/- (n = 3) and Ptdsr +/+ (n = 3) mice at E12.5 and E13.5.
T6841 455-457 PRP denotes We
T6842 458-466 VBD denotes compared
T6843 467-470 DT denotes the
T6844 471-478 NN denotes pattern
T6845 479-481 IN denotes of
T6846 482-494 JJ denotes interdigital
T6847 500-505 NN denotes death
T6848 495-499 NN denotes cell
T6849 506-508 IN denotes in
T6850 509-513 JJ denotes fore
T6851 528-532 NNS denotes buds
T6852 514-517 CC denotes and
T6853 518-522 JJ denotes hind
T6854 523-527 NN denotes limb
T6855 533-537 IN denotes from
T6856 538-543 NN denotes Ptdsr
T6857 578-582 NNS denotes mice
T6858 544-545 SYM denotes -
T6859 545-546 HYPH denotes /
T6860 546-547 SYM denotes -
T6861 548-549 -LRB- denotes (
T6862 553-554 CD denotes 3
T6863 549-550 NN denotes n
T6864 551-552 SYM denotes =
T6865 554-555 -RRB- denotes )
T6866 556-559 CC denotes and
T6867 560-565 NN denotes Ptdsr
T6868 566-567 SYM denotes +
T6869 567-568 HYPH denotes /
T6870 568-569 SYM denotes +
T6871 570-571 -LRB- denotes (
T6872 575-576 CD denotes 3
T6873 571-572 NN denotes n
T6874 573-574 SYM denotes =
T6875 576-577 -RRB- denotes )
T6876 583-585 IN denotes at
T6877 586-591 NN denotes E12.5
T6878 592-595 CC denotes and
T6879 596-601 NN denotes E13.5
T6880 601-602 . denotes .
T6881 602-717 sentence denotes No differences in accumulation of TUNEL-positive cell corpses were observed between the two genotypes (Figure 6a).
T6882 603-605 DT denotes No
T6883 606-617 NNS denotes differences
T6884 670-678 VBN denotes observed
T6885 618-620 IN denotes in
T6886 621-633 NN denotes accumulation
T6887 634-636 IN denotes of
T6888 637-642 NN denotes TUNEL
T6889 643-651 JJ denotes positive
T6890 642-643 HYPH denotes -
T6891 657-664 NNS denotes corpses
T6892 652-656 NN denotes cell
T6893 665-669 VBD denotes were
T6894 679-686 IN denotes between
T6895 687-690 DT denotes the
T6896 695-704 NNS denotes genotypes
T6897 691-694 CD denotes two
T6898 705-706 -LRB- denotes (
T6899 713-715 NN denotes 6a
T6900 706-712 NN denotes Figure
T6901 715-716 -RRB- denotes )
T6902 716-717 . denotes .
T6903 717-982 sentence denotes The kinetics of cell death occurrence and regression of the interdigital web was similar in wild-type and mutant littermates, providing no evidence that Ptdsr-deficiency is associated with impaired clearance of apoptotic interdigital cells during limb development.
T6904 718-721 DT denotes The
T6905 722-730 NN denotes kinetics
T6906 795-798 VBD denotes was
T6907 731-733 IN denotes of
T6908 734-738 NN denotes cell
T6909 739-744 NN denotes death
T6910 745-755 NN denotes occurrence
T6911 756-759 CC denotes and
T6912 760-770 NN denotes regression
T6913 771-773 IN denotes of
T6914 774-777 DT denotes the
T6915 791-794 NN denotes web
T6916 778-790 JJ denotes interdigital
T6917 799-806 JJ denotes similar
T6918 807-809 IN denotes in
T6919 810-814 JJ denotes wild
T6920 815-819 NN denotes type
T6921 814-815 HYPH denotes -
T6922 831-842 NNS denotes littermates
T6923 820-823 CC denotes and
T6924 824-830 JJ denotes mutant
T6925 842-844 , denotes ,
T6926 844-853 VBG denotes providing
T6927 854-856 DT denotes no
T6928 857-865 NN denotes evidence
T6929 866-870 IN denotes that
T6930 891-901 VBN denotes associated
T6931 871-876 NN denotes Ptdsr
T6932 877-887 NN denotes deficiency
T6933 876-877 HYPH denotes -
T6934 888-890 VBZ denotes is
T6935 902-906 IN denotes with
T6936 907-915 JJ denotes impaired
T6937 916-925 NN denotes clearance
T6938 926-928 IN denotes of
T6939 929-938 JJ denotes apoptotic
T6940 952-957 NNS denotes cells
T6941 939-951 JJ denotes interdigital
T6942 958-964 IN denotes during
T6943 965-969 NN denotes limb
T6944 970-981 NN denotes development
T6945 981-982 . denotes .
R3625 T6760 T6761 nsubj We,tested
R3626 T6762 T6761 advmod next,tested
R3627 T6763 T6764 mark whether,required
R3628 T6764 T6761 ccomp required,tested
R3629 T6765 T6764 nsubjpass Ptdsr,required
R3630 T6766 T6764 auxpass is,required
R3631 T6767 T6764 advmod functionally,required
R3632 T6768 T6764 prep for,required
R3633 T6769 T6770 det the,clearance
R3634 T6770 T6768 pobj clearance,for
R3635 T6771 T6770 prep of,clearance
R3636 T6772 T6773 amod apoptotic,cells
R3637 T6773 T6771 pobj cells,of
R3638 T6774 T6761 punct .,tested
R3639 T6776 T6777 nsubj We,started
R3640 T6778 T6777 prep with,started
R3641 T6779 T6780 det an,investigation
R3642 T6780 T6778 pobj investigation,with
R3643 T6781 T6780 prep of,investigation
R3644 T6782 T6783 compound cell,death
R3645 T6783 T6781 pobj death,of
R3646 T6784 T6785 advmod in,vivo
R3647 T6785 T6783 advmod vivo,death
R3648 T6786 T6783 prep in,death
R3649 T6787 T6788 det the,areas
R3650 T6788 T6786 pobj areas,in
R3651 T6789 T6788 amod interdigital,areas
R3652 T6790 T6788 prep of,areas
R3653 T6791 T6792 det the,limbs
R3654 T6792 T6790 pobj limbs,of
R3655 T6793 T6792 amod developing,limbs
R3656 T6794 T6777 punct .,started
R3657 T6796 T6797 nsubj Apoptosis,occurs
R3658 T6798 T6796 prep of,Apoptosis
R3659 T6799 T6800 amod interdigital,cells
R3660 T6800 T6798 pobj cells,of
R3661 T6801 T6796 prep in,Apoptosis
R3662 T6802 T6803 det the,mesenchyme
R3663 T6803 T6801 pobj mesenchyme,in
R3664 T6804 T6803 amod distal,mesenchyme
R3665 T6805 T6803 prep of,mesenchyme
R3666 T6806 T6807 compound limb,buds
R3667 T6807 T6805 pobj buds,of
R3668 T6808 T6809 advmod most,prominently
R3669 T6809 T6797 advmod prominently,occurs
R3670 T6810 T6797 prep from,occurs
R3671 T6811 T6812 amod developmental,E12.0
R3672 T6812 T6810 pobj E12.0,from
R3673 T6813 T6812 compound stages,E12.0
R3674 T6814 T6812 prep to,E12.0
R3675 T6815 T6814 pobj E13.5,to
R3676 T6816 T6797 cc and,occurs
R3677 T6817 T6818 aux can,examined
R3678 T6818 T6797 conj examined,occurs
R3679 T6819 T6818 auxpass be,examined
R3680 T6820 T6818 advmod easily,examined
R3681 T6821 T6822 advmod in,situ
R3682 T6822 T6818 advmod situ,examined
R3683 T6823 T6818 prep by,examined
R3684 T6824 T6825 amod whole,mount
R3685 T6825 T6827 nmod mount,end
R3686 T6826 T6825 punct -,mount
R3687 T6827 T6823 pobj end,by
R3688 T6828 T6827 amod terminal,end
R3689 T6829 T6827 nmod deoxynucleotide,end
R3690 T6830 T6831 npadvmod transferase,mediated
R3691 T6831 T6827 amod mediated,end
R3692 T6832 T6831 punct -,mediated
R3693 T6833 T6827 compound UTP,end
R3694 T6834 T6827 punct -,end
R3695 T6835 T6827 amod labeling,end
R3696 T6836 T6827 punct (,end
R3697 T6837 T6827 appos TUNEL,end
R3698 T6838 T6797 punct ),occurs
R3699 T6839 T6797 punct .,occurs
R3700 T6841 T6842 nsubj We,compared
R3701 T6843 T6844 det the,pattern
R3702 T6844 T6842 dobj pattern,compared
R3703 T6845 T6844 prep of,pattern
R3704 T6846 T6847 amod interdigital,death
R3705 T6847 T6845 pobj death,of
R3706 T6848 T6847 compound cell,death
R3707 T6849 T6842 prep in,compared
R3708 T6850 T6851 amod fore,buds
R3709 T6851 T6849 pobj buds,in
R3710 T6852 T6850 cc and,fore
R3711 T6853 T6850 conj hind,fore
R3712 T6854 T6851 compound limb,buds
R3713 T6855 T6851 prep from,buds
R3714 T6856 T6857 nmod Ptdsr,mice
R3715 T6857 T6855 pobj mice,from
R3716 T6858 T6856 punct -,Ptdsr
R3717 T6859 T6856 punct /,Ptdsr
R3718 T6860 T6856 punct -,Ptdsr
R3719 T6861 T6862 punct (,3
R3720 T6862 T6856 parataxis 3,Ptdsr
R3721 T6863 T6862 nsubj n,3
R3722 T6864 T6862 punct =,3
R3723 T6865 T6862 punct ),3
R3724 T6866 T6856 cc and,Ptdsr
R3725 T6867 T6856 conj Ptdsr,Ptdsr
R3726 T6868 T6867 punct +,Ptdsr
R3727 T6869 T6867 punct /,Ptdsr
R3728 T6870 T6867 punct +,Ptdsr
R3729 T6871 T6872 punct (,3
R3730 T6872 T6867 parataxis 3,Ptdsr
R3731 T6873 T6872 nsubj n,3
R3732 T6874 T6872 punct =,3
R3733 T6875 T6872 punct ),3
R3734 T6876 T6857 prep at,mice
R3735 T6877 T6876 pobj E12.5,at
R3736 T6878 T6877 cc and,E12.5
R3737 T6879 T6877 conj E13.5,E12.5
R3738 T6880 T6842 punct .,compared
R3739 T6882 T6883 det No,differences
R3740 T6883 T6884 nsubjpass differences,observed
R3741 T6885 T6883 prep in,differences
R3742 T6886 T6885 pobj accumulation,in
R3743 T6887 T6886 prep of,accumulation
R3744 T6888 T6889 npadvmod TUNEL,positive
R3745 T6889 T6891 amod positive,corpses
R3746 T6890 T6889 punct -,positive
R3747 T6891 T6887 pobj corpses,of
R3748 T6892 T6891 compound cell,corpses
R3749 T6893 T6884 auxpass were,observed
R3750 T6894 T6884 prep between,observed
R3751 T6895 T6896 det the,genotypes
R3752 T6896 T6894 pobj genotypes,between
R3753 T6897 T6896 nummod two,genotypes
R3754 T6898 T6899 punct (,6a
R3755 T6899 T6884 parataxis 6a,observed
R3756 T6900 T6899 compound Figure,6a
R3757 T6901 T6899 punct ),6a
R3758 T6902 T6884 punct .,observed
R3759 T6904 T6905 det The,kinetics
R3760 T6905 T6906 nsubj kinetics,was
R3761 T6907 T6905 prep of,kinetics
R3762 T6908 T6909 compound cell,death
R3763 T6909 T6910 compound death,occurrence
R3764 T6910 T6907 pobj occurrence,of
R3765 T6911 T6910 cc and,occurrence
R3766 T6912 T6910 conj regression,occurrence
R3767 T6913 T6912 prep of,regression
R3768 T6914 T6915 det the,web
R3769 T6915 T6913 pobj web,of
R3770 T6916 T6915 amod interdigital,web
R3771 T6917 T6906 acomp similar,was
R3772 T6918 T6906 prep in,was
R3773 T6919 T6920 amod wild,type
R3774 T6920 T6922 nmod type,littermates
R3775 T6921 T6920 punct -,type
R3776 T6922 T6918 pobj littermates,in
R3777 T6923 T6920 cc and,type
R3778 T6924 T6920 conj mutant,type
R3779 T6925 T6906 punct ", ",was
R3780 T6926 T6906 advcl providing,was
R3781 T6927 T6928 det no,evidence
R3782 T6928 T6926 dobj evidence,providing
R3783 T6929 T6930 mark that,associated
R3784 T6930 T6928 acl associated,evidence
R3785 T6931 T6932 compound Ptdsr,deficiency
R3786 T6932 T6930 nsubjpass deficiency,associated
R3787 T6933 T6932 punct -,deficiency
R3788 T6934 T6930 auxpass is,associated
R3789 T6935 T6930 prep with,associated
R3790 T6936 T6937 amod impaired,clearance
R3791 T6937 T6935 pobj clearance,with
R3792 T6938 T6937 prep of,clearance
R3793 T6939 T6940 amod apoptotic,cells
R3794 T6940 T6938 pobj cells,of
R3795 T6941 T6940 amod interdigital,cells
R3796 T6942 T6937 prep during,clearance
R3797 T6943 T6944 compound limb,development
R3798 T6944 T6942 pobj development,during
R3799 T6945 T6906 punct .,was

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6444 23-28 PR_EXT:000009218 denotes Ptdsr
T6445 62-90 GO:0043277 denotes clearance of apoptotic cells
T6446 75-90 CL:0000445 denotes apoptotic cells
T6447 85-90 CL_GO_EXT:cell denotes cells
T6448 128-132 CL_GO_EXT:cell denotes cell
T6449 128-138 GO:0008219 denotes cell death
T6450 154-172 UBERON:0006012 denotes interdigital areas
T6451 191-196 UBERON:0002101 denotes limbs
T6452 198-210 _FRAGMENT denotes Apoptosis of
T6453 224-229 GO:0006915 denotes cells
T6454 216-223 UBERON:0002544 denotes digital
T6455 224-229 CL_GO_EXT:cell denotes cells
T6456 244-267 UBERON:0010328 denotes mesenchyme of limb buds
T6457 383-419 GO_PR_EXT:DNA_nucleotidylexotransferase denotes terminal deoxynucleotide transferase
T6458 392-407 CHEBI_SO_EXT:deoxyribonucleotide denotes deoxynucleotide
T6459 429-432 CHEBI_EXT:UTP denotes UTP
T6460 437-445 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T6461 487-494 UBERON:0002544 denotes digital
T6462 495-499 CL_GO_EXT:cell denotes cell
T6463 495-505 GO:0008219 denotes cell death
T6464 509-513 _FRAGMENT denotes fore
T6465 523-532 UBERON:0005417 denotes limb buds
T6466 518-532 UBERON:0005418 denotes hind limb buds
T6467 538-543 PR_EXT:000009218 denotes Ptdsr
T6468 544-545 SO_EXT:sequence_nullness_or_absence denotes -
T6469 546-547 SO_EXT:sequence_nullness_or_absence denotes -
T6470 560-565 PR_EXT:000009218 denotes Ptdsr
T6471 566-567 SO_EXT:normal_or_wild_type_or_present denotes +
T6472 568-569 SO_EXT:normal_or_wild_type_or_present denotes +
T6473 578-582 NCBITaxon:10088 denotes mice
T6474 652-656 CL_GO_EXT:cell denotes cell
T6475 695-704 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T6476 734-738 CL_GO_EXT:cell denotes cell
T6477 734-744 GO:0008219 denotes cell death
T6478 760-770 GO:0060033 denotes regression
T6479 778-794 UBERON:0006015 denotes interdigital web
T6480 810-819 SO_EXT:wild_type_entity_or_quality denotes wild-type
T6481 824-830 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T6482 871-876 PR_EXT:000009218 denotes Ptdsr
T6483 916-938 _FRAGMENT denotes clearance of apoptotic
T6484 952-957 GO:0043277 denotes cells
T6485 929-938 _FRAGMENT denotes apoptotic
T6486 952-957 CL:0000445 denotes cells
T6487 944-951 UBERON:0002544 denotes digital
T6488 952-957 CL_GO_EXT:cell denotes cells
T6489 965-969 UBERON:0002101 denotes limb
T6490 965-981 GO:0060173 denotes limb development
R3608 T6453 T6452 _lexicallyChainedTo cells,Apoptosis of
R3609 T6465 T6464 _lexicallyChainedTo limb buds,fore
R3610 T6484 T6483 _lexicallyChainedTo cells,clearance of apoptotic
R3611 T6486 T6485 _lexicallyChainedTo cells,apoptotic

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6250 23-28 PR:000009218 denotes Ptdsr
T6251 62-90 GO:0043277 denotes clearance of apoptotic cells
T6252 75-90 CL:0000445 denotes apoptotic cells
T6253 128-138 GO:0008219 denotes cell death
T6254 154-172 UBERON:0006012 denotes interdigital areas
T6255 191-196 UBERON:0002101 denotes limbs
T6256 198-210 _FRAGMENT denotes Apoptosis of
T6257 224-229 GO:0006915 denotes cells
T6258 216-223 UBERON:0002544 denotes digital
T6259 244-267 UBERON:0010328 denotes mesenchyme of limb buds
T6260 487-494 UBERON:0002544 denotes digital
T6261 495-505 GO:0008219 denotes cell death
T6262 509-513 _FRAGMENT denotes fore
T6263 523-532 UBERON:0005417 denotes limb buds
T6264 518-532 UBERON:0005418 denotes hind limb buds
T6265 538-543 PR:000009218 denotes Ptdsr
T6266 560-565 PR:000009218 denotes Ptdsr
T6267 578-582 NCBITaxon:10088 denotes mice
T6268 734-744 GO:0008219 denotes cell death
T6269 760-770 GO:0060033 denotes regression
T6270 778-794 UBERON:0006015 denotes interdigital web
T6271 871-876 PR:000009218 denotes Ptdsr
T6272 916-938 _FRAGMENT denotes clearance of apoptotic
T6273 952-957 GO:0043277 denotes cells
T6274 929-938 _FRAGMENT denotes apoptotic
T6275 952-957 CL:0000445 denotes cells
T6276 944-951 UBERON:0002544 denotes digital
T6277 965-969 UBERON:0002101 denotes limb
T6278 965-981 GO:0060173 denotes limb development
R3602 T6257 T6256 _lexicallyChainedTo cells,Apoptosis of
R3603 T6263 T6262 _lexicallyChainedTo limb buds,fore
R3604 T6273 T6272 _lexicallyChainedTo cells,clearance of apoptotic
R3605 T6275 T6274 _lexicallyChainedTo cells,apoptotic