> top > docs > PMC:549712 > spans > 11497-13511 > annotations

PMC:549712 / 11497-13511 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T3746 0-2 PRP denotes We
T3747 9-17 VBD denotes examined
T3748 3-8 RB denotes first
T3749 18-23 NN denotes Ptdsr
T3750 24-34 NN denotes expression
T3751 35-37 IN denotes by
T3752 38-39 NN denotes X
T3753 40-43 NN denotes Gal
T3754 39-40 HYPH denotes -
T3755 44-52 NN denotes staining
T3756 53-55 IN denotes in
T3757 56-68 JJ denotes heterozygous
T3758 69-76 NNS denotes embryos
T3759 77-83 VBN denotes staged
T3760 84-88 IN denotes from
T3761 89-93 NN denotes E9.5
T3762 94-96 IN denotes to
T3763 97-102 NN denotes E12.5
T3764 102-103 . denotes .
T3765 103-270 sentence denotes These developmental stages were chosen so as to investigate Ptdsr expression in affected organs prior to the onset of pathological malformations in Ptdsr -/- embryos.
T3766 104-109 DT denotes These
T3767 124-130 NNS denotes stages
T3768 110-123 JJ denotes developmental
T3769 136-142 VBN denotes chosen
T3770 131-135 VBD denotes were
T3771 143-145 RB denotes so
T3772 152-163 VB denotes investigate
T3773 146-148 IN denotes as
T3774 149-151 TO denotes to
T3775 164-169 NN denotes Ptdsr
T3776 170-180 NN denotes expression
T3777 181-183 IN denotes in
T3778 184-192 VBN denotes affected
T3779 193-199 NNS denotes organs
T3780 200-205 JJ denotes prior
T3781 206-208 IN denotes to
T3782 209-212 DT denotes the
T3783 213-218 NN denotes onset
T3784 219-221 IN denotes of
T3785 222-234 JJ denotes pathological
T3786 235-248 NNS denotes malformations
T3787 249-251 IN denotes in
T3788 252-257 NN denotes Ptdsr
T3789 262-269 NNS denotes embryos
T3790 258-259 SYM denotes -
T3791 259-260 HYPH denotes /
T3792 260-261 SYM denotes -
T3793 269-270 . denotes .
T3794 270-389 sentence denotes At E9.5 we found Ptdsr expression in the developing neural tube, somites, heart, gut and branchial arches (Figure 2b).
T3795 271-273 IN denotes At
T3796 282-287 VBD denotes found
T3797 274-278 NN denotes E9.5
T3798 279-281 PRP denotes we
T3799 288-293 NN denotes Ptdsr
T3800 294-304 NN denotes expression
T3801 305-307 IN denotes in
T3802 308-311 DT denotes the
T3803 330-334 NN denotes tube
T3804 312-322 VBG denotes developing
T3805 323-329 JJ denotes neural
T3806 334-336 , denotes ,
T3807 336-343 NNS denotes somites
T3808 343-345 , denotes ,
T3809 345-350 NN denotes heart
T3810 350-352 , denotes ,
T3811 352-355 NN denotes gut
T3812 356-359 CC denotes and
T3813 360-369 JJ denotes branchial
T3814 370-376 NNS denotes arches
T3815 377-378 -LRB- denotes (
T3816 385-387 NN denotes 2b
T3817 378-384 NN denotes Figure
T3818 387-388 -RRB- denotes )
T3819 388-389 . denotes .
T3820 389-536 sentence denotes At E10.5, Ptdsr expression remained high in the developing nervous system, with most intense staining in the forebrain, hindbrain and neural tube.
T3821 390-392 IN denotes At
T3822 417-425 VBD denotes remained
T3823 393-398 NN denotes E10.5
T3824 398-400 , denotes ,
T3825 400-405 NN denotes Ptdsr
T3826 406-416 NN denotes expression
T3827 426-430 JJ denotes high
T3828 431-433 IN denotes in
T3829 434-437 DT denotes the
T3830 457-463 NN denotes system
T3831 438-448 VBG denotes developing
T3832 449-456 JJ denotes nervous
T3833 463-465 , denotes ,
T3834 465-469 IN denotes with
T3835 470-474 RBS denotes most
T3836 483-491 NN denotes staining
T3837 475-482 JJ denotes intense
T3838 492-494 IN denotes in
T3839 495-498 DT denotes the
T3840 499-508 NN denotes forebrain
T3841 508-510 , denotes ,
T3842 510-519 NN denotes hindbrain
T3843 520-523 CC denotes and
T3844 524-530 JJ denotes neural
T3845 531-535 NN denotes tube
T3846 535-536 . denotes .
T3847 536-673 sentence denotes At this stage of embryogenesis, high levels of Ptdsr expression could also be detected in the developing limb buds and eyes (Figure 2b).
T3848 537-539 IN denotes At
T3849 615-623 VBN denotes detected
T3850 540-544 DT denotes this
T3851 545-550 NN denotes stage
T3852 551-553 IN denotes of
T3853 554-567 NN denotes embryogenesis
T3854 567-569 , denotes ,
T3855 569-573 JJ denotes high
T3856 574-580 NNS denotes levels
T3857 581-583 IN denotes of
T3858 584-589 NN denotes Ptdsr
T3859 590-600 NN denotes expression
T3860 601-606 MD denotes could
T3861 607-611 RB denotes also
T3862 612-614 VB denotes be
T3863 624-626 IN denotes in
T3864 627-630 DT denotes the
T3865 647-651 NNS denotes buds
T3866 631-641 VBG denotes developing
T3867 642-646 NN denotes limb
T3868 652-655 CC denotes and
T3869 656-660 NNS denotes eyes
T3870 661-662 -LRB- denotes (
T3871 669-671 NN denotes 2b
T3872 662-668 NN denotes Figure
T3873 671-672 -RRB- denotes )
T3874 672-673 . denotes .
T3875 673-848 sentence denotes Ptdsr expression was altered at E12.5, with most intensive β-galactosidase staining in the eyes, developing condensations of the limb buds, neural tube and brain (Figure 2b).
T3876 674-679 NN denotes Ptdsr
T3877 680-690 NN denotes expression
T3878 695-702 VBN denotes altered
T3879 691-694 VBD denotes was
T3880 703-705 IN denotes at
T3881 706-711 NN denotes E12.5
T3882 711-713 , denotes ,
T3883 713-717 IN denotes with
T3884 718-722 JJS denotes most
T3885 749-757 NN denotes staining
T3886 723-732 JJ denotes intensive
T3887 733-734 NN denotes β
T3888 735-748 NN denotes galactosidase
T3889 734-735 HYPH denotes -
T3890 758-760 IN denotes in
T3891 761-764 DT denotes the
T3892 765-769 NNS denotes eyes
T3893 769-771 , denotes ,
T3894 771-781 VBG denotes developing
T3895 782-795 NNS denotes condensations
T3896 796-798 IN denotes of
T3897 799-802 DT denotes the
T3898 808-812 NNS denotes buds
T3899 803-807 NN denotes limb
T3900 812-814 , denotes ,
T3901 814-820 JJ denotes neural
T3902 821-825 NN denotes tube
T3903 826-829 CC denotes and
T3904 830-835 NN denotes brain
T3905 836-837 -LRB- denotes (
T3906 844-846 NN denotes 2b
T3907 837-843 NN denotes Figure
T3908 846-847 -RRB- denotes )
T3909 847-848 . denotes .
T3910 848-1109 sentence denotes Transverse sections of X-Gal-stained embryos at E12.5 showed an asymmetric expression pattern in the neural tube with intense staining of the central mantle layer but no expression in the dorsal part of the neural tube (for example, the roof plate; Figure 2c).
T3911 849-859 JJ denotes Transverse
T3912 860-868 NNS denotes sections
T3913 903-909 VBD denotes showed
T3914 869-871 IN denotes of
T3915 872-873 NN denotes X
T3916 874-877 NN denotes Gal
T3917 873-874 HYPH denotes -
T3918 878-885 VBN denotes stained
T3919 877-878 HYPH denotes -
T3920 886-893 NNS denotes embryos
T3921 894-896 IN denotes at
T3922 897-902 NN denotes E12.5
T3923 910-912 DT denotes an
T3924 935-942 NN denotes pattern
T3925 913-923 JJ denotes asymmetric
T3926 924-934 NN denotes expression
T3927 943-945 IN denotes in
T3928 946-949 DT denotes the
T3929 957-961 NN denotes tube
T3930 950-956 JJ denotes neural
T3931 962-966 IN denotes with
T3932 967-974 JJ denotes intense
T3933 975-983 NN denotes staining
T3934 984-986 IN denotes of
T3935 987-990 DT denotes the
T3936 1006-1011 NN denotes layer
T3937 991-998 JJ denotes central
T3938 999-1005 NN denotes mantle
T3939 1012-1015 CC denotes but
T3940 1016-1018 DT denotes no
T3941 1019-1029 NN denotes expression
T3942 1030-1032 IN denotes in
T3943 1033-1036 DT denotes the
T3944 1044-1048 NN denotes part
T3945 1037-1043 JJ denotes dorsal
T3946 1049-1051 IN denotes of
T3947 1052-1055 DT denotes the
T3948 1063-1067 NN denotes tube
T3949 1056-1062 JJ denotes neural
T3950 1068-1069 -LRB- denotes (
T3951 1105-1107 NN denotes 2c
T3952 1069-1072 IN denotes for
T3953 1073-1080 NN denotes example
T3954 1080-1082 , denotes ,
T3955 1082-1085 DT denotes the
T3956 1091-1096 NN denotes plate
T3957 1086-1090 NN denotes roof
T3958 1096-1097 : denotes ;
T3959 1098-1104 NN denotes Figure
T3960 1107-1108 -RRB- denotes )
T3961 1108-1109 . denotes .
T3962 1109-1303 sentence denotes Expression in dorsal root ganglia lateral to the neural tube and in the somites was observed; Ptdsr was expressed throughout the somite structure (myotome, dermatome and sclerotome; Figure 2d).
T3963 1110-1120 NN denotes Expression
T3964 1194-1202 VBN denotes observed
T3965 1121-1123 IN denotes in
T3966 1124-1130 JJ denotes dorsal
T3967 1136-1143 NNS denotes ganglia
T3968 1131-1135 NN denotes root
T3969 1144-1151 JJ denotes lateral
T3970 1152-1154 IN denotes to
T3971 1155-1158 DT denotes the
T3972 1166-1170 NN denotes tube
T3973 1159-1165 JJ denotes neural
T3974 1171-1174 CC denotes and
T3975 1175-1177 IN denotes in
T3976 1178-1181 DT denotes the
T3977 1182-1189 NNS denotes somites
T3978 1190-1193 VBD denotes was
T3979 1214-1223 VBN denotes expressed
T3980 1202-1203 : denotes ;
T3981 1204-1209 NN denotes Ptdsr
T3982 1210-1213 VBD denotes was
T3983 1224-1234 IN denotes throughout
T3984 1235-1238 DT denotes the
T3985 1246-1255 NN denotes structure
T3986 1239-1245 NN denotes somite
T3987 1256-1257 -LRB- denotes (
T3988 1299-1301 NN denotes 2d
T3989 1257-1264 NN denotes myotome
T3990 1264-1266 , denotes ,
T3991 1266-1275 NN denotes dermatome
T3992 1276-1279 CC denotes and
T3993 1280-1290 NN denotes sclerotome
T3994 1290-1291 : denotes ;
T3995 1292-1298 NN denotes Figure
T3996 1301-1302 -RRB- denotes )
T3997 1302-1303 . denotes .
T3998 1303-1473 sentence denotes Expression boundaries between somites were evident, with no expression in the segmental interzones, which correspond to the prospective intervertebral discs (Figure 2d).
T3999 1304-1314 NN denotes Expression
T4000 1315-1325 NNS denotes boundaries
T4001 1342-1346 VBD denotes were
T4002 1326-1333 IN denotes between
T4003 1334-1341 NNS denotes somites
T4004 1347-1354 JJ denotes evident
T4005 1354-1356 , denotes ,
T4006 1356-1360 IN denotes with
T4007 1361-1363 DT denotes no
T4008 1364-1374 NN denotes expression
T4009 1375-1377 IN denotes in
T4010 1378-1381 DT denotes the
T4011 1392-1402 NNS denotes interzones
T4012 1382-1391 JJ denotes segmental
T4013 1402-1404 , denotes ,
T4014 1404-1409 WDT denotes which
T4015 1410-1420 VBP denotes correspond
T4016 1421-1423 IN denotes to
T4017 1424-1427 DT denotes the
T4018 1455-1460 NNS denotes discs
T4019 1428-1439 JJ denotes prospective
T4020 1440-1454 JJ denotes intervertebral
T4021 1461-1462 -LRB- denotes (
T4022 1469-1471 NN denotes 2d
T4023 1462-1468 NN denotes Figure
T4024 1471-1472 -RRB- denotes )
T4025 1472-1473 . denotes .
T4026 1473-1644 sentence denotes Transverse sections of the developing eye at E12.5 revealed strong Ptdsr expression in the inner layer of the neural cup, which will later develop into the neural retina.
T4027 1474-1484 JJ denotes Transverse
T4028 1485-1493 NNS denotes sections
T4029 1525-1533 VBD denotes revealed
T4030 1494-1496 IN denotes of
T4031 1497-1500 DT denotes the
T4032 1512-1515 NN denotes eye
T4033 1501-1511 VBG denotes developing
T4034 1516-1518 IN denotes at
T4035 1519-1524 NN denotes E12.5
T4036 1534-1540 JJ denotes strong
T4037 1547-1557 NN denotes expression
T4038 1541-1546 NN denotes Ptdsr
T4039 1558-1560 IN denotes in
T4040 1561-1564 DT denotes the
T4041 1571-1576 NN denotes layer
T4042 1565-1570 JJ denotes inner
T4043 1577-1579 IN denotes of
T4044 1580-1583 DT denotes the
T4045 1591-1594 NN denotes cup
T4046 1584-1590 JJ denotes neural
T4047 1594-1596 , denotes ,
T4048 1596-1601 WDT denotes which
T4049 1613-1620 VB denotes develop
T4050 1602-1606 MD denotes will
T4051 1607-1612 RB denotes later
T4052 1621-1625 IN denotes into
T4053 1626-1629 DT denotes the
T4054 1637-1643 NN denotes retina
T4055 1630-1636 JJ denotes neural
T4056 1643-1644 . denotes .
T4057 1644-1755 sentence denotes Furthermore, Ptdsr expression was detected in the primary lens fiber cells of the developing lens (Figure 2e).
T4058 1645-1656 RB denotes Furthermore
T4059 1679-1687 VBN denotes detected
T4060 1656-1658 , denotes ,
T4061 1658-1663 NN denotes Ptdsr
T4062 1664-1674 NN denotes expression
T4063 1675-1678 VBD denotes was
T4064 1688-1690 IN denotes in
T4065 1691-1694 DT denotes the
T4066 1714-1719 NNS denotes cells
T4067 1695-1702 JJ denotes primary
T4068 1703-1707 NN denotes lens
T4069 1708-1713 NN denotes fiber
T4070 1720-1722 IN denotes of
T4071 1723-1726 DT denotes the
T4072 1738-1742 NN denotes lens
T4073 1727-1737 VBG denotes developing
T4074 1743-1744 -LRB- denotes (
T4075 1751-1753 NN denotes 2e
T4076 1744-1750 NN denotes Figure
T4077 1753-1754 -RRB- denotes )
T4078 1754-1755 . denotes .
T4079 1755-2014 sentence denotes We carefully investigated whether Ptdsr is expressed from E10.5 to E12.5 in the developing kidney and lungs, but no expression could be detected indicating that Ptdsr expression is required only at later stages in the development of these organs (see below).
T4080 1756-1758 PRP denotes We
T4081 1769-1781 VBD denotes investigated
T4082 1759-1768 RB denotes carefully
T4083 1782-1789 IN denotes whether
T4084 1799-1808 VBN denotes expressed
T4085 1790-1795 NN denotes Ptdsr
T4086 1796-1798 VBZ denotes is
T4087 1809-1813 IN denotes from
T4088 1814-1819 NN denotes E10.5
T4089 1820-1822 IN denotes to
T4090 1823-1828 NN denotes E12.5
T4091 1829-1831 IN denotes in
T4092 1832-1835 DT denotes the
T4093 1847-1853 NN denotes kidney
T4094 1836-1846 VBG denotes developing
T4095 1854-1857 CC denotes and
T4096 1858-1863 NNS denotes lungs
T4097 1863-1865 , denotes ,
T4098 1865-1868 CC denotes but
T4099 1869-1871 DT denotes no
T4100 1872-1882 NN denotes expression
T4101 1892-1900 VBN denotes detected
T4102 1883-1888 MD denotes could
T4103 1889-1891 VB denotes be
T4104 1901-1911 VBG denotes indicating
T4105 1912-1916 IN denotes that
T4106 1937-1945 VBN denotes required
T4107 1917-1922 NN denotes Ptdsr
T4108 1923-1933 NN denotes expression
T4109 1934-1936 VBZ denotes is
T4110 1946-1950 RB denotes only
T4111 1951-1953 IN denotes at
T4112 1954-1959 JJR denotes later
T4113 1960-1966 NNS denotes stages
T4114 1967-1969 IN denotes in
T4115 1970-1973 DT denotes the
T4116 1974-1985 NN denotes development
T4117 1986-1988 IN denotes of
T4118 1989-1994 DT denotes these
T4119 1995-2001 NNS denotes organs
T4120 2002-2003 -LRB- denotes (
T4121 2003-2006 VB denotes see
T4122 2007-2012 RB denotes below
T4123 2012-2013 -RRB- denotes )
T4124 2013-2014 . denotes .
R2013 T3746 T3747 nsubj We,examined
R2014 T3748 T3747 advmod first,examined
R2015 T3749 T3750 compound Ptdsr,expression
R2016 T3750 T3747 dobj expression,examined
R2017 T3751 T3747 prep by,examined
R2018 T3752 T3753 compound X,Gal
R2019 T3753 T3755 compound Gal,staining
R2020 T3754 T3753 punct -,Gal
R2021 T3755 T3751 pobj staining,by
R2022 T3756 T3747 prep in,examined
R2023 T3757 T3758 amod heterozygous,embryos
R2024 T3758 T3756 pobj embryos,in
R2025 T3759 T3758 acl staged,embryos
R2026 T3760 T3759 prep from,staged
R2027 T3761 T3760 pobj E9.5,from
R2028 T3762 T3760 prep to,from
R2029 T3763 T3762 pobj E12.5,to
R2030 T3764 T3747 punct .,examined
R2031 T3766 T3767 det These,stages
R2032 T3767 T3769 nsubjpass stages,chosen
R2033 T3768 T3767 amod developmental,stages
R2034 T3770 T3769 auxpass were,chosen
R2035 T3771 T3772 advmod so,investigate
R2036 T3772 T3769 advcl investigate,chosen
R2037 T3773 T3772 mark as,investigate
R2038 T3774 T3772 aux to,investigate
R2039 T3775 T3776 compound Ptdsr,expression
R2040 T3776 T3772 dobj expression,investigate
R2041 T3777 T3772 prep in,investigate
R2042 T3778 T3779 amod affected,organs
R2043 T3779 T3777 pobj organs,in
R2044 T3780 T3781 amod prior,to
R2045 T3781 T3772 prep to,investigate
R2046 T3782 T3783 det the,onset
R2047 T3783 T3781 pobj onset,to
R2048 T3784 T3783 prep of,onset
R2049 T3785 T3786 amod pathological,malformations
R2050 T3786 T3784 pobj malformations,of
R2051 T3787 T3783 prep in,onset
R2052 T3788 T3789 nmod Ptdsr,embryos
R2053 T3789 T3787 pobj embryos,in
R2054 T3790 T3788 punct -,Ptdsr
R2055 T3791 T3788 punct /,Ptdsr
R2056 T3792 T3788 punct -,Ptdsr
R2057 T3793 T3769 punct .,chosen
R2058 T3795 T3796 prep At,found
R2059 T3797 T3795 pobj E9.5,At
R2060 T3798 T3796 nsubj we,found
R2061 T3799 T3800 compound Ptdsr,expression
R2062 T3800 T3796 dobj expression,found
R2063 T3801 T3796 prep in,found
R2064 T3802 T3803 det the,tube
R2065 T3803 T3801 pobj tube,in
R2066 T3804 T3803 amod developing,tube
R2067 T3805 T3803 amod neural,tube
R2068 T3806 T3803 punct ", ",tube
R2069 T3807 T3803 conj somites,tube
R2070 T3808 T3807 punct ", ",somites
R2071 T3809 T3807 conj heart,somites
R2072 T3810 T3809 punct ", ",heart
R2073 T3811 T3809 conj gut,heart
R2074 T3812 T3811 cc and,gut
R2075 T3813 T3814 amod branchial,arches
R2076 T3814 T3811 conj arches,gut
R2077 T3815 T3816 punct (,2b
R2078 T3816 T3796 parataxis 2b,found
R2079 T3817 T3816 compound Figure,2b
R2080 T3818 T3816 punct ),2b
R2081 T3819 T3796 punct .,found
R2082 T3821 T3822 prep At,remained
R2083 T3823 T3821 pobj E10.5,At
R2084 T3824 T3822 punct ", ",remained
R2085 T3825 T3826 compound Ptdsr,expression
R2086 T3826 T3822 nsubj expression,remained
R2087 T3827 T3822 acomp high,remained
R2088 T3828 T3822 prep in,remained
R2089 T3829 T3830 det the,system
R2090 T3830 T3828 pobj system,in
R2091 T3831 T3830 amod developing,system
R2092 T3832 T3830 amod nervous,system
R2093 T3833 T3822 punct ", ",remained
R2094 T3834 T3822 prep with,remained
R2095 T3835 T3836 advmod most,staining
R2096 T3836 T3834 pobj staining,with
R2097 T3837 T3836 amod intense,staining
R2098 T3838 T3836 prep in,staining
R2099 T3839 T3840 det the,forebrain
R2100 T3840 T3838 pobj forebrain,in
R2101 T3841 T3840 punct ", ",forebrain
R2102 T3842 T3840 conj hindbrain,forebrain
R2103 T3843 T3842 cc and,hindbrain
R2104 T3844 T3845 amod neural,tube
R2105 T3845 T3842 conj tube,hindbrain
R2106 T3846 T3822 punct .,remained
R2107 T3848 T3849 prep At,detected
R2108 T3850 T3851 det this,stage
R2109 T3851 T3848 pobj stage,At
R2110 T3852 T3851 prep of,stage
R2111 T3853 T3852 pobj embryogenesis,of
R2112 T3854 T3849 punct ", ",detected
R2113 T3855 T3856 amod high,levels
R2114 T3856 T3849 nsubjpass levels,detected
R2115 T3857 T3856 prep of,levels
R2116 T3858 T3859 compound Ptdsr,expression
R2117 T3859 T3857 pobj expression,of
R2118 T3860 T3849 aux could,detected
R2119 T3861 T3849 advmod also,detected
R2120 T3862 T3849 auxpass be,detected
R2121 T3863 T3849 prep in,detected
R2122 T3864 T3865 det the,buds
R2123 T3865 T3863 pobj buds,in
R2124 T3866 T3865 amod developing,buds
R2125 T3867 T3865 compound limb,buds
R2126 T3868 T3865 cc and,buds
R2127 T3869 T3865 conj eyes,buds
R2128 T3870 T3871 punct (,2b
R2129 T3871 T3849 parataxis 2b,detected
R2130 T3872 T3871 compound Figure,2b
R2131 T3873 T3871 punct ),2b
R2132 T3874 T3849 punct .,detected
R2133 T3876 T3877 compound Ptdsr,expression
R2134 T3877 T3878 nsubjpass expression,altered
R2135 T3879 T3878 auxpass was,altered
R2136 T3880 T3878 prep at,altered
R2137 T3881 T3880 pobj E12.5,at
R2138 T3882 T3878 punct ", ",altered
R2139 T3883 T3878 prep with,altered
R2140 T3884 T3885 amod most,staining
R2141 T3885 T3883 pobj staining,with
R2142 T3886 T3885 amod intensive,staining
R2143 T3887 T3888 compound β,galactosidase
R2144 T3888 T3885 compound galactosidase,staining
R2145 T3889 T3888 punct -,galactosidase
R2146 T3890 T3885 prep in,staining
R2147 T3891 T3892 det the,eyes
R2148 T3892 T3890 pobj eyes,in
R2149 T3893 T3892 punct ", ",eyes
R2150 T3894 T3895 amod developing,condensations
R2151 T3895 T3892 conj condensations,eyes
R2152 T3896 T3895 prep of,condensations
R2153 T3897 T3898 det the,buds
R2154 T3898 T3896 pobj buds,of
R2155 T3899 T3898 compound limb,buds
R2156 T3900 T3895 punct ", ",condensations
R2157 T3901 T3902 amod neural,tube
R2158 T3902 T3895 conj tube,condensations
R2159 T3903 T3902 cc and,tube
R2160 T3904 T3902 conj brain,tube
R2161 T3905 T3906 punct (,2b
R2162 T3906 T3878 parataxis 2b,altered
R2163 T3907 T3906 compound Figure,2b
R2164 T3908 T3906 punct ),2b
R2165 T3909 T3878 punct .,altered
R2166 T3911 T3912 amod Transverse,sections
R2167 T3912 T3913 nsubj sections,showed
R2168 T3914 T3912 prep of,sections
R2169 T3915 T3916 compound X,Gal
R2170 T3916 T3918 npadvmod Gal,stained
R2171 T3917 T3916 punct -,Gal
R2172 T3918 T3920 amod stained,embryos
R2173 T3919 T3918 punct -,stained
R2174 T3920 T3914 pobj embryos,of
R2175 T3921 T3912 prep at,sections
R2176 T3922 T3921 pobj E12.5,at
R2177 T3923 T3924 det an,pattern
R2178 T3924 T3913 dobj pattern,showed
R2179 T3925 T3924 amod asymmetric,pattern
R2180 T3926 T3924 compound expression,pattern
R2181 T3927 T3924 prep in,pattern
R2182 T3928 T3929 det the,tube
R2183 T3929 T3927 pobj tube,in
R2184 T3930 T3929 amod neural,tube
R2185 T3931 T3924 prep with,pattern
R2186 T3932 T3933 amod intense,staining
R2187 T3933 T3931 pobj staining,with
R2188 T3934 T3933 prep of,staining
R2189 T3935 T3936 det the,layer
R2190 T3936 T3934 pobj layer,of
R2191 T3937 T3936 amod central,layer
R2192 T3938 T3936 compound mantle,layer
R2193 T3939 T3924 cc but,pattern
R2194 T3940 T3941 det no,expression
R2195 T3941 T3924 conj expression,pattern
R2196 T3942 T3941 prep in,expression
R2197 T3943 T3944 det the,part
R2198 T3944 T3942 pobj part,in
R2199 T3945 T3944 amod dorsal,part
R2200 T3946 T3944 prep of,part
R2201 T3947 T3948 det the,tube
R2202 T3948 T3946 pobj tube,of
R2203 T3949 T3948 amod neural,tube
R2204 T3950 T3951 punct (,2c
R2205 T3951 T3944 parataxis 2c,part
R2206 T3952 T3951 prep for,2c
R2207 T3953 T3952 pobj example,for
R2208 T3954 T3951 punct ", ",2c
R2209 T3955 T3956 det the,plate
R2210 T3956 T3951 dep plate,2c
R2211 T3957 T3956 compound roof,plate
R2212 T3958 T3951 punct ;,2c
R2213 T3959 T3951 compound Figure,2c
R2214 T3960 T3951 punct ),2c
R2215 T3961 T3913 punct .,showed
R2216 T3963 T3964 nsubjpass Expression,observed
R2217 T3964 T3979 ccomp observed,expressed
R2218 T3965 T3963 prep in,Expression
R2219 T3966 T3967 amod dorsal,ganglia
R2220 T3967 T3965 pobj ganglia,in
R2221 T3968 T3967 compound root,ganglia
R2222 T3969 T3967 amod lateral,ganglia
R2223 T3970 T3969 prep to,lateral
R2224 T3971 T3972 det the,tube
R2225 T3972 T3970 pobj tube,to
R2226 T3973 T3972 amod neural,tube
R2227 T3974 T3969 cc and,lateral
R2228 T3975 T3969 conj in,lateral
R2229 T3976 T3977 det the,somites
R2230 T3977 T3975 pobj somites,in
R2231 T3978 T3964 auxpass was,observed
R2232 T3980 T3979 punct ;,expressed
R2233 T3981 T3979 nsubjpass Ptdsr,expressed
R2234 T3982 T3979 auxpass was,expressed
R2235 T3983 T3979 prep throughout,expressed
R2236 T3984 T3985 det the,structure
R2237 T3985 T3983 pobj structure,throughout
R2238 T3986 T3985 compound somite,structure
R2239 T3987 T3988 punct (,2d
R2240 T3988 T3985 parataxis 2d,structure
R2241 T3989 T3988 dep myotome,2d
R2242 T3990 T3989 punct ", ",myotome
R2243 T3991 T3989 conj dermatome,myotome
R2244 T3992 T3991 cc and,dermatome
R2245 T3993 T3991 conj sclerotome,dermatome
R2246 T3994 T3988 punct ;,2d
R2247 T3995 T3988 compound Figure,2d
R2248 T3996 T3988 punct ),2d
R2249 T3997 T3979 punct .,expressed
R2250 T3999 T4000 compound Expression,boundaries
R2251 T4000 T4001 nsubj boundaries,were
R2252 T4002 T4000 prep between,boundaries
R2253 T4003 T4002 pobj somites,between
R2254 T4004 T4001 acomp evident,were
R2255 T4005 T4001 punct ", ",were
R2256 T4006 T4001 prep with,were
R2257 T4007 T4008 det no,expression
R2258 T4008 T4006 pobj expression,with
R2259 T4009 T4008 prep in,expression
R2260 T4010 T4011 det the,interzones
R2261 T4011 T4009 pobj interzones,in
R2262 T4012 T4011 amod segmental,interzones
R2263 T4013 T4011 punct ", ",interzones
R2264 T4014 T4015 dep which,correspond
R2265 T4015 T4011 relcl correspond,interzones
R2266 T4016 T4015 prep to,correspond
R2267 T4017 T4018 det the,discs
R2268 T4018 T4016 pobj discs,to
R2269 T4019 T4018 amod prospective,discs
R2270 T4020 T4018 amod intervertebral,discs
R2271 T4021 T4022 punct (,2d
R2272 T4022 T4001 parataxis 2d,were
R2273 T4023 T4022 compound Figure,2d
R2274 T4024 T4022 punct ),2d
R2275 T4025 T4001 punct .,were
R2276 T4027 T4028 amod Transverse,sections
R2277 T4028 T4029 nsubj sections,revealed
R2278 T4030 T4028 prep of,sections
R2279 T4031 T4032 det the,eye
R2280 T4032 T4030 pobj eye,of
R2281 T4033 T4032 amod developing,eye
R2282 T4034 T4028 prep at,sections
R2283 T4035 T4034 pobj E12.5,at
R2284 T4036 T4037 amod strong,expression
R2285 T4037 T4029 dobj expression,revealed
R2286 T4038 T4037 compound Ptdsr,expression
R2287 T4039 T4029 prep in,revealed
R2288 T4040 T4041 det the,layer
R2289 T4041 T4039 pobj layer,in
R2290 T4042 T4041 amod inner,layer
R2291 T4043 T4041 prep of,layer
R2292 T4044 T4045 det the,cup
R2293 T4045 T4043 pobj cup,of
R2294 T4046 T4045 amod neural,cup
R2295 T4047 T4045 punct ", ",cup
R2296 T4048 T4049 dep which,develop
R2297 T4049 T4045 relcl develop,cup
R2298 T4050 T4049 aux will,develop
R2299 T4051 T4049 advmod later,develop
R2300 T4052 T4049 prep into,develop
R2301 T4053 T4054 det the,retina
R2302 T4054 T4052 pobj retina,into
R2303 T4055 T4054 amod neural,retina
R2304 T4056 T4029 punct .,revealed
R2305 T4058 T4059 advmod Furthermore,detected
R2306 T4060 T4059 punct ", ",detected
R2307 T4061 T4062 compound Ptdsr,expression
R2308 T4062 T4059 nsubjpass expression,detected
R2309 T4063 T4059 auxpass was,detected
R2310 T4064 T4059 prep in,detected
R2311 T4065 T4066 det the,cells
R2312 T4066 T4064 pobj cells,in
R2313 T4067 T4068 amod primary,lens
R2314 T4068 T4066 compound lens,cells
R2315 T4069 T4066 compound fiber,cells
R2316 T4070 T4066 prep of,cells
R2317 T4071 T4072 det the,lens
R2318 T4072 T4070 pobj lens,of
R2319 T4073 T4072 amod developing,lens
R2320 T4074 T4075 punct (,2e
R2321 T4075 T4059 parataxis 2e,detected
R2322 T4076 T4075 compound Figure,2e
R2323 T4077 T4075 punct ),2e
R2324 T4078 T4059 punct .,detected
R2325 T4080 T4081 nsubj We,investigated
R2326 T4082 T4081 advmod carefully,investigated
R2327 T4083 T4084 mark whether,expressed
R2328 T4084 T4081 ccomp expressed,investigated
R2329 T4085 T4084 nsubjpass Ptdsr,expressed
R2330 T4086 T4084 auxpass is,expressed
R2331 T4087 T4084 prep from,expressed
R2332 T4088 T4087 pobj E10.5,from
R2333 T4089 T4087 prep to,from
R2334 T4090 T4089 pobj E12.5,to
R2335 T4091 T4084 prep in,expressed
R2336 T4092 T4093 det the,kidney
R2337 T4093 T4091 pobj kidney,in
R2338 T4094 T4093 amod developing,kidney
R2339 T4095 T4093 cc and,kidney
R2340 T4096 T4093 conj lungs,kidney
R2341 T4097 T4081 punct ", ",investigated
R2342 T4098 T4081 cc but,investigated
R2343 T4099 T4100 det no,expression
R2344 T4100 T4101 nsubjpass expression,detected
R2345 T4101 T4081 conj detected,investigated
R2346 T4102 T4101 aux could,detected
R2347 T4103 T4101 auxpass be,detected
R2348 T4104 T4101 advcl indicating,detected
R2349 T4105 T4106 mark that,required
R2350 T4106 T4104 ccomp required,indicating
R2351 T4107 T4108 compound Ptdsr,expression
R2352 T4108 T4106 nsubjpass expression,required
R2353 T4109 T4106 auxpass is,required
R2354 T4110 T4106 advmod only,required
R2355 T4111 T4106 prep at,required
R2356 T4112 T4113 amod later,stages
R2357 T4113 T4111 pobj stages,at
R2358 T4114 T4113 prep in,stages
R2359 T4115 T4116 det the,development
R2360 T4116 T4114 pobj development,in
R2361 T4117 T4116 prep of,development
R2362 T4118 T4119 det these,organs
R2363 T4119 T4117 pobj organs,of
R2364 T4120 T4121 punct (,see
R2365 T4121 T4101 parataxis see,detected
R2366 T4122 T4121 advmod below,see
R2367 T4123 T4121 punct ),see
R2368 T4124 T4101 punct .,detected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3504 18-23 PR_EXT:000009218 denotes Ptdsr
T3505 24-34 GO:0010467 denotes expression
T3506 38-43 CHEBI:75055 denotes X-Gal
T3507 69-76 UBERON:0000922 denotes embryos
T3508 164-169 PR_EXT:000009218 denotes Ptdsr
T3509 170-180 GO:0010467 denotes expression
T3510 193-199 UBERON:0000062 denotes organs
T3511 252-257 PR_EXT:000009218 denotes Ptdsr
T3512 258-259 SO_EXT:sequence_nullness_or_absence denotes -
T3513 260-261 SO_EXT:sequence_nullness_or_absence denotes -
T3514 262-269 UBERON:0000922 denotes embryos
T3515 288-293 PR_EXT:000009218 denotes Ptdsr
T3516 294-304 GO:0010467 denotes expression
T3517 323-334 UBERON:0001049 denotes neural tube
T3518 336-343 UBERON:0002329 denotes somites
T3519 345-350 UBERON:0000948 denotes heart
T3520 352-355 UBERON:0001555 denotes gut
T3521 360-376 UBERON:0002539 denotes branchial arches
T3522 400-405 PR_EXT:000009218 denotes Ptdsr
T3523 406-416 GO:0010467 denotes expression
T3524 449-463 UBERON:0001016 denotes nervous system
T3525 499-508 UBERON:0001890 denotes forebrain
T3526 510-519 UBERON:0002028 denotes hindbrain
T3527 524-535 UBERON:0001049 denotes neural tube
T3528 554-567 GO:0009790 denotes embryogenesis
T3529 584-589 PR_EXT:000009218 denotes Ptdsr
T3530 590-600 GO:0010467 denotes expression
T3531 642-651 UBERON:0004347 denotes limb buds
T3532 656-660 UBERON:0000970 denotes eyes
T3533 674-679 PR_EXT:000009218 denotes Ptdsr
T3534 680-690 GO:0010467 denotes expression
T3535 733-748 GO_EXT:0004565 denotes β-galactosidase
T3536 765-769 UBERON:0000970 denotes eyes
T3537 803-812 UBERON:0004347 denotes limb buds
T3538 814-825 UBERON:0001049 denotes neural tube
T3539 830-835 UBERON:0000955 denotes brain
T3540 872-877 CHEBI:75055 denotes X-Gal
T3541 886-893 UBERON:0000922 denotes embryos
T3542 924-934 GO:0010467 denotes expression
T3543 950-961 UBERON:0001049 denotes neural tube
T3544 999-1011 UBERON:0004061 denotes mantle layer
T3545 1019-1029 GO:0010467 denotes expression
T3546 1056-1067 UBERON:0001049 denotes neural tube
T3547 1086-1096 UBERON:0003054 denotes roof plate
T3548 1110-1120 GO:0010467 denotes Expression
T3549 1124-1143 UBERON:0000044 denotes dorsal root ganglia
T3550 1159-1170 UBERON:0001049 denotes neural tube
T3551 1182-1189 UBERON:0002329 denotes somites
T3552 1204-1209 PR_EXT:000009218 denotes Ptdsr
T3553 1214-1223 GO:0010467 denotes expressed
T3554 1239-1245 UBERON:0002329 denotes somite
T3555 1257-1264 UBERON:0003082 denotes myotome
T3556 1266-1275 UBERON:0004016 denotes dermatome
T3557 1280-1290 UBERON:0003089 denotes sclerotome
T3558 1304-1314 GO:0010467 denotes Expression
T3559 1334-1341 UBERON:0002329 denotes somites
T3560 1364-1374 GO:0010467 denotes expression
T3561 1440-1460 UBERON:0001066 denotes intervertebral discs
T3562 1512-1515 UBERON:0000970 denotes eye
T3563 1541-1546 PR_EXT:000009218 denotes Ptdsr
T3564 1547-1557 GO:0010467 denotes expression
T3566 1565-1579,1584-1594 UBERON:0005425 denotes inner layer of neural cup
T3567 1630-1643 UBERON:0003902 denotes neural retina
T3568 1658-1663 PR_EXT:000009218 denotes Ptdsr
T3569 1664-1674 GO:0010467 denotes expression
T3570 1695-1719 CL:0002228 denotes primary lens fiber cells
T3571 1703-1713 CL_UBERON_EXT:lens_fiber denotes lens fiber
T3572 1714-1719 CL_GO_EXT:cell denotes cells
T3573 1738-1742 UBERON_EXT:lens denotes lens
T3574 1790-1795 PR_EXT:000009218 denotes Ptdsr
T3575 1799-1808 GO:0010467 denotes expressed
T3576 1847-1853 UBERON:0002113 denotes kidney
T3577 1858-1863 UBERON:0002048 denotes lungs
T3578 1872-1882 GO:0010467 denotes expression
T3579 1917-1922 PR_EXT:000009218 denotes Ptdsr
T3580 1923-1933 GO:0010467 denotes expression
T3582 1974-1988,1995-2001 GO:0048513 denotes development of organs
T3583 1995-2001 UBERON:0000062 denotes organs

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3408 872-877 CHEBI:75055 denotes X-Gal
T3375 18-23 PR:000009218 denotes Ptdsr
T3376 24-34 GO:0010467 denotes expression
T3377 38-43 CHEBI:75055 denotes X-Gal
T3378 69-76 UBERON:0000922 denotes embryos
T3379 164-169 PR:000009218 denotes Ptdsr
T3380 170-180 GO:0010467 denotes expression
T3381 193-199 UBERON:0000062 denotes organs
T3382 252-257 PR:000009218 denotes Ptdsr
T3383 262-269 UBERON:0000922 denotes embryos
T3384 288-293 PR:000009218 denotes Ptdsr
T3385 294-304 GO:0010467 denotes expression
T3386 323-334 UBERON:0001049 denotes neural tube
T3387 336-343 UBERON:0002329 denotes somites
T3388 345-350 UBERON:0000948 denotes heart
T3389 352-355 UBERON:0001555 denotes gut
T3390 360-376 UBERON:0002539 denotes branchial arches
T3391 400-405 PR:000009218 denotes Ptdsr
T3392 406-416 GO:0010467 denotes expression
T3393 449-463 UBERON:0001016 denotes nervous system
T3394 499-508 UBERON:0001890 denotes forebrain
T3395 510-519 UBERON:0002028 denotes hindbrain
T3396 524-535 UBERON:0001049 denotes neural tube
T3397 554-567 GO:0009790 denotes embryogenesis
T3398 584-589 PR:000009218 denotes Ptdsr
T3399 590-600 GO:0010467 denotes expression
T3400 642-651 UBERON:0004347 denotes limb buds
T3401 656-660 UBERON:0000970 denotes eyes
T3402 674-679 PR:000009218 denotes Ptdsr
T3404 765-769 UBERON:0000970 denotes eyes
T3405 803-812 UBERON:0004347 denotes limb buds
T3406 814-825 UBERON:0001049 denotes neural tube
T3407 830-835 UBERON:0000955 denotes brain
T3409 886-893 UBERON:0000922 denotes embryos
T3410 924-934 GO:0010467 denotes expression
T3411 950-961 UBERON:0001049 denotes neural tube
T3412 999-1011 UBERON:0004061 denotes mantle layer
T3413 1019-1029 GO:0010467 denotes expression
T3414 1056-1067 UBERON:0001049 denotes neural tube
T3415 1086-1096 UBERON:0003054 denotes roof plate
T3416 1110-1120 GO:0010467 denotes Expression
T3417 1124-1143 UBERON:0000044 denotes dorsal root ganglia
T3418 1159-1170 UBERON:0001049 denotes neural tube
T3419 1182-1189 UBERON:0002329 denotes somites
T3420 1204-1209 PR:000009218 denotes Ptdsr
T3421 1214-1223 GO:0010467 denotes expressed
T3422 1239-1245 UBERON:0002329 denotes somite
T3423 1257-1264 UBERON:0003082 denotes myotome
T3424 1266-1275 UBERON:0004016 denotes dermatome
T3425 1280-1290 UBERON:0003089 denotes sclerotome
T3426 1304-1314 GO:0010467 denotes Expression
T3427 1334-1341 UBERON:0002329 denotes somites
T3428 1364-1374 GO:0010467 denotes expression
T3429 1440-1460 UBERON:0001066 denotes intervertebral discs
T3430 1512-1515 UBERON:0000970 denotes eye
T3431 1541-1546 PR:000009218 denotes Ptdsr
T3432 1547-1557 GO:0010467 denotes expression
T3434 1565-1579,1584-1594 UBERON:0005425 denotes inner layer of neural cup
T3435 1630-1643 UBERON:0003902 denotes neural retina
T3436 1658-1663 PR:000009218 denotes Ptdsr
T3437 1664-1674 GO:0010467 denotes expression
T3438 1695-1719 CL:0002228 denotes primary lens fiber cells
T3439 1790-1795 PR:000009218 denotes Ptdsr
T3440 1799-1808 GO:0010467 denotes expressed
T3441 1847-1853 UBERON:0002113 denotes kidney
T3442 1858-1863 UBERON:0002048 denotes lungs
T3443 1872-1882 GO:0010467 denotes expression
T3444 1917-1922 PR:000009218 denotes Ptdsr
T3445 1923-1933 GO:0010467 denotes expression
T3447 1974-1988,1995-2001 GO:0048513 denotes development of organs
T3448 1995-2001 UBERON:0000062 denotes organs
T3403 680-690 GO:0010467 denotes expression