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PMC:548520 / 5597-6397 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T797 19-25 NCBITaxon:33208 denotes animal
T798 68-75 UBERON:0000966 denotes retinal
T799 136-144 CL:0000540 denotes neuronal
T800 145-160 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T801 170-177 GO:0045202 denotes synapse
T802 170-187 GO:0007416 denotes synapse formation
T803 342-357 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T804 371-377 UBERON:0000966 denotes retina
T805 381-384 PR_EXT:000005904 denotes Crx
T806 384-385 SO_EXT:sequence_nullness_or_absence denotes -
T807 386-387 SO_EXT:sequence_nullness_or_absence denotes -
T808 388-392 NCBITaxon:10088 denotes mice
T809 429-436 UBERON:0000966 denotes retinas
T810 472-475 PR_EXT:000005904 denotes Crx
T811 475-476 SO_EXT:sequence_nullness_or_absence denotes -
T812 477-478 SO_EXT:sequence_nullness_or_absence denotes -
T813 479-493 CL:0000210 denotes photoreceptors
T814 526-539 GO:0001750 denotes outer segment
T815 590-595 CL_GO_EXT:cell denotes cells
T816 613-621 GO:0045202 denotes synaptic
T817 669-672 PR_EXT:000005904 denotes Crx
T818 676-689 CL:0000210 denotes photoreceptor
T819 690-704 GO:0007416 denotes synaptogenesis
T820 775-782 GO:0045202 denotes synapse
T821 775-792 GO:0007416 denotes synapse formation

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T609 19-25 NCBITaxon:33208 denotes animal
T610 68-75 UBERON:0000966 denotes retinal
T611 136-144 CL:0000540 denotes neuronal
T612 170-177 GO:0045202 denotes synapse
T613 170-187 GO:0007416 denotes synapse formation
T614 371-377 UBERON:0000966 denotes retina
T615 381-384 PR:000005904 denotes Crx
T616 388-392 NCBITaxon:10088 denotes mice
T617 429-436 UBERON:0000966 denotes retinas
T618 472-475 PR:000005904 denotes Crx
T619 479-493 CL:0000210 denotes photoreceptors
T620 526-539 GO:0001750 denotes outer segment
T621 613-621 GO:0045202 denotes synaptic
T622 669-672 PR:000005904 denotes Crx
T623 676-689 CL:0000210 denotes photoreceptor
T624 690-704 GO:0007416 denotes synaptogenesis
T625 775-782 GO:0045202 denotes synapse
T626 775-792 GO:0007416 denotes synapse formation

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1686 0-3 JJ denotes Few
T1687 4-11 NNS denotes studies
T1688 38-46 VBN denotes extended
T1689 12-14 IN denotes of
T1690 15-18 NN denotes LCA
T1691 26-32 NNS denotes models
T1692 19-25 NN denotes animal
T1693 33-37 VBP denotes have
T1694 47-52 PRP$ denotes their
T1695 53-64 NN denotes examination
T1696 65-67 IN denotes of
T1697 68-75 JJ denotes retinal
T1698 76-85 NN denotes pathology
T1699 86-88 IN denotes to
T1700 89-92 DT denotes the
T1701 109-114 NN denotes level
T1702 93-108 JJ denotes ultrastructural
T1703 114-115 . denotes .
T1704 115-244 sentence denotes Certain features of neuronal differentiation, such as synapse formation, can be detected definitively at this level of analysis.
T1705 116-123 JJ denotes Certain
T1706 124-132 NNS denotes features
T1707 196-204 VBN denotes detected
T1708 133-135 IN denotes of
T1709 136-144 JJ denotes neuronal
T1710 145-160 NN denotes differentiation
T1711 160-162 , denotes ,
T1712 162-166 JJ denotes such
T1713 167-169 IN denotes as
T1714 170-177 NN denotes synapse
T1715 178-187 NN denotes formation
T1716 187-189 , denotes ,
T1717 189-192 MD denotes can
T1718 193-195 VB denotes be
T1719 205-217 RB denotes definitively
T1720 218-220 IN denotes at
T1721 221-225 DT denotes this
T1722 226-231 NN denotes level
T1723 232-234 IN denotes of
T1724 235-243 NN denotes analysis
T1725 243-244 . denotes .
T1726 244-422 sentence denotes With the hope of understanding the neuropathology of LCA in greater detail, we have analyzed the differentiation of the outer retina in Crx-/- mice at the ultrastructural level.
T1727 245-249 IN denotes With
T1728 329-337 VBN denotes analyzed
T1729 250-253 DT denotes the
T1730 254-258 NN denotes hope
T1731 259-261 IN denotes of
T1732 262-275 VBG denotes understanding
T1733 276-279 DT denotes the
T1734 280-294 NN denotes neuropathology
T1735 295-297 IN denotes of
T1736 298-301 NN denotes LCA
T1737 302-304 IN denotes in
T1738 305-312 JJR denotes greater
T1739 313-319 NN denotes detail
T1740 319-321 , denotes ,
T1741 321-323 PRP denotes we
T1742 324-328 VBP denotes have
T1743 338-341 DT denotes the
T1744 342-357 NN denotes differentiation
T1745 358-360 IN denotes of
T1746 361-364 DT denotes the
T1747 371-377 NN denotes retina
T1748 365-370 JJ denotes outer
T1749 378-380 IN denotes in
T1750 381-384 NN denotes Crx
T1751 388-392 NNS denotes mice
T1752 384-385 SYM denotes -
T1753 385-386 HYPH denotes /
T1754 386-387 SYM denotes -
T1755 393-395 IN denotes at
T1756 396-399 DT denotes the
T1757 416-421 NN denotes level
T1758 400-415 JJ denotes ultrastructural
T1759 421-422 . denotes .
T1760 422-471 sentence denotes These retinas exhibit several prominent defects.
T1761 423-428 DT denotes These
T1762 429-436 NNS denotes retinas
T1763 437-444 VBP denotes exhibit
T1764 445-452 JJ denotes several
T1765 463-470 NNS denotes defects
T1766 453-462 JJ denotes prominent
T1767 470-471 . denotes .
T1768 471-574 sentence denotes Crx-/- photoreceptors demonstrate a complete block in outer segment formation at the elongation stage.
T1769 472-475 NN denotes Crx
T1770 479-493 NNS denotes photoreceptors
T1771 475-476 SYM denotes -
T1772 476-477 HYPH denotes /
T1773 477-478 SYM denotes -
T1774 494-505 VBP denotes demonstrate
T1775 506-507 DT denotes a
T1776 517-522 NN denotes block
T1777 508-516 JJ denotes complete
T1778 523-525 IN denotes in
T1779 526-531 JJ denotes outer
T1780 532-539 NN denotes segment
T1781 540-549 NN denotes formation
T1782 550-552 IN denotes at
T1783 553-556 DT denotes the
T1784 568-573 NN denotes stage
T1785 557-567 NN denotes elongation
T1786 573-574 . denotes .
T1787 574-705 sentence denotes Further, these cells exhibit abnormal synaptic morphology, thereby broadening the function of Crx to photoreceptor synaptogenesis.
T1788 575-582 RB denotes Further
T1789 596-603 VBP denotes exhibit
T1790 582-584 , denotes ,
T1791 584-589 DT denotes these
T1792 590-595 NNS denotes cells
T1793 604-612 JJ denotes abnormal
T1794 622-632 NN denotes morphology
T1795 613-621 JJ denotes synaptic
T1796 632-634 , denotes ,
T1797 634-641 RB denotes thereby
T1798 642-652 VBG denotes broadening
T1799 653-656 DT denotes the
T1800 657-665 NN denotes function
T1801 666-668 IN denotes of
T1802 669-672 NN denotes Crx
T1803 673-675 IN denotes to
T1804 676-689 NN denotes photoreceptor
T1805 690-704 NN denotes synaptogenesis
T1806 704-705 . denotes .
T1807 705-800 sentence denotes This represents the first report strongly implicating the process of synapse formation in LCA.
T1808 706-710 DT denotes This
T1809 711-721 VBZ denotes represents
T1810 722-725 DT denotes the
T1811 732-738 NN denotes report
T1812 726-731 JJ denotes first
T1813 739-747 RB denotes strongly
T1814 748-759 VBG denotes implicating
T1815 760-763 DT denotes the
T1816 764-771 NN denotes process
T1817 772-774 IN denotes of
T1818 775-782 NN denotes synapse
T1819 783-792 NN denotes formation
T1820 793-795 IN denotes in
T1821 796-799 NN denotes LCA
T1822 799-800 . denotes .
R955 T1695 T1688 dobj examination,extended
R956 T1696 T1695 prep of,examination
R958 T1697 T1698 amod retinal,pathology
R959 T1698 T1696 pobj pathology,of
R961 T1699 T1688 prep to,extended
R962 T1700 T1701 det the,level
R963 T1701 T1699 pobj level,to
R964 T1702 T1701 amod ultrastructural,level
R966 T1703 T1688 punct .,extended
R968 T1705 T1706 amod Certain,features
R969 T1706 T1707 nsubjpass features,detected
R971 T1708 T1706 prep of,features
R972 T1709 T1710 amod neuronal,differentiation
R974 T1710 T1708 pobj differentiation,of
R975 T1711 T1706 punct ", ",features
R977 T1712 T1713 amod such,as
R978 T1713 T1706 prep as,features
R979 T1714 T1715 compound synapse,formation
R981 T1715 T1713 pobj formation,as
R982 T1716 T1707 punct ", ",detected
R983 T1717 T1707 aux can,detected
R985 T1718 T1707 auxpass be,detected
R986 T1719 T1707 advmod definitively,detected
R987 T1720 T1707 prep at,detected
R988 T1721 T1722 det this,level
R989 T1722 T1720 pobj level,at
R990 T1723 T1722 prep of,level
R992 T1724 T1723 pobj analysis,of
R993 T1725 T1707 punct .,detected
R995 T1727 T1728 prep With,analyzed
R996 T1729 T1730 det the,hope
R998 T1730 T1727 pobj hope,With
R999 T1731 T1730 prep of,hope
R1001 T1732 T1731 pcomp understanding,of
R1002 T1733 T1734 det the,neuropathology
R1003 T1734 T1732 dobj neuropathology,understanding
R1004 T1735 T1734 prep of,neuropathology
R1006 T1736 T1735 pobj LCA,of
R1007 T1737 T1732 prep in,understanding
R1008 T1738 T1739 amod greater,detail
R1010 T1739 T1737 pobj detail,in
R1011 T1740 T1728 punct ", ",analyzed
R1012 T1741 T1728 nsubj we,analyzed
R1014 T1742 T1728 aux have,analyzed
R1015 T1743 T1744 det the,differentiation
R1017 T1744 T1728 dobj differentiation,analyzed
R1018 T1745 T1744 prep of,differentiation
R1019 T1746 T1747 det the,retina
R1021 T1747 T1745 pobj retina,of
R1022 T1748 T1747 amod outer,retina
R1023 T1749 T1744 prep in,differentiation
R1025 T1750 T1751 nmod Crx,mice
R1026 T1751 T1749 pobj mice,in
R1027 T1752 T1750 punct -,Crx
R1029 T1753 T1750 punct /,Crx
R1030 T1754 T1750 punct -,Crx
R1031 T1755 T1728 prep at,analyzed
R1033 T1756 T1757 det the,level
R1034 T1757 T1755 pobj level,at
R1036 T1758 T1757 amod ultrastructural,level
R1037 T1759 T1728 punct .,analyzed
R1038 T1761 T1762 det These,retinas
R1039 T1762 T1763 nsubj retinas,exhibit
R1040 T1764 T1765 amod several,defects
R1042 T1765 T1763 dobj defects,exhibit
R1043 T1766 T1765 amod prominent,defects
R1044 T1767 T1763 punct .,exhibit
R1046 T1769 T1770 nmod Crx,photoreceptors
R1047 T1770 T1774 nsubj photoreceptors,demonstrate
R1049 T1771 T1769 punct -,Crx
R1050 T1772 T1769 punct /,Crx
R1052 T1773 T1769 punct -,Crx
R1053 T1775 T1776 det a,block
R1055 T1776 T1774 dobj block,demonstrate
R1056 T1777 T1776 amod complete,block
R1057 T1778 T1776 prep in,block
R1059 T1779 T1780 amod outer,segment
R1061 T1780 T1781 compound segment,formation
R1063 T1781 T1778 pobj formation,in
R1064 T1782 T1774 prep at,demonstrate
R1066 T1783 T1784 det the,stage
R1067 T1784 T1782 pobj stage,at
R1068 T1785 T1784 compound elongation,stage
R1069 T1786 T1774 punct .,demonstrate
R1071 T1788 T1789 advmod Further,exhibit
R1073 T1790 T1789 punct ", ",exhibit
R1075 T1791 T1792 det these,cells
R1076 T1792 T1789 nsubj cells,exhibit
R1077 T1793 T1794 amod abnormal,morphology
R1078 T1794 T1789 dobj morphology,exhibit
R1080 T1795 T1794 amod synaptic,morphology
R1082 T1796 T1789 punct ", ",exhibit
R1083 T1797 T1798 advmod thereby,broadening
R1084 T1798 T1789 advcl broadening,exhibit
R1086 T1799 T1800 det the,function
R1087 T1800 T1798 dobj function,broadening
R1090 T1801 T1800 prep of,function
R1091 T1802 T1801 pobj Crx,of
R1092 T1803 T1798 prep to,broadening
R1093 T1804 T1805 compound photoreceptor,synaptogenesis
R1094 T1805 T1803 pobj synaptogenesis,to
R1096 T1806 T1789 punct .,exhibit
R1097 T1808 T1809 nsubj This,represents
R1099 T1810 T1811 det the,report
R1100 T1811 T1809 dobj report,represents
R1102 T1812 T1811 amod first,report
R1103 T1813 T1814 advmod strongly,implicating
R1104 T1814 T1811 acl implicating,report
R1107 T1815 T1816 det the,process
R1108 T1816 T1814 dobj process,implicating
R1110 T1817 T1816 prep of,process
R1111 T1818 T1819 compound synapse,formation
R1112 T1819 T1817 pobj formation,of
R1114 T1820 T1814 prep in,implicating
R1115 T1821 T1820 pobj LCA,in
R1116 T1822 T1809 punct .,represents
R1134 T1686 T1687 amod Few,studies
R1135 T1687 T1688 nsubj studies,extended
R1136 T1689 T1687 prep of,studies
R1137 T1690 T1691 compound LCA,models
R1138 T1691 T1689 pobj models,of
R1139 T1692 T1691 compound animal,models
R1140 T1693 T1688 aux have,extended
R1141 T1694 T1695 poss their,examination