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PMC:548520 / 29139-30167 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
15676071-11748842-12933309 182-184 11748842 denotes 53
15676071-8512479-12933310 368-370 8512479 denotes 54
15676071-8541873-12933311 475-477 8541873 denotes 55
15676071-11733058-12933312 665-667 11733058 denotes 35

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7085 0-3 PR_EXT:000005904 denotes Crx
T7086 33-46 CL:0000210 denotes photoreceptor
T7087 71-76 NCBITaxon:9606 denotes human
T7088 88-92 CL:0000573 denotes cone
T7089 93-96 CL:0000604 denotes rod
T7090 192-196 CL:0000573 denotes cone
T7091 197-200 CL:0000604 denotes rod
T7092 249-253 CL:0000573 denotes cone
T7093 263-269 GO:0007601 denotes vision
T7094 293-297 UBERON:0000104 denotes life
T7095 347-350 CL:0000604 denotes rod
T7096 360-366 GO:0007601 denotes vision
T7097 419-422 CL:0000604 denotes rod
T7098 453-457 CL:0000573 denotes cone
T7099 467-473 GO:0007601 denotes vision
T7100 502-507 SO_EXT:0000704 denotes genes
T7101 524-529 NCBITaxon:9606 denotes human
T7102 530-537 SO_EXT:0000704 denotes genetic
T7103 549-555 SO_EXT:sequence_coding_function denotes encode
T7104 556-564 CHEBI_PR_EXT:protein denotes proteins
T7105 565-574 GO:0010467 denotes expressed
T7106 614-628 CL:0000210 denotes photoreceptors
T7107 650-663 GO:0001750 denotes outer segment
T7108 684-692 CHEBI_PR_EXT:protein denotes proteins
T7109 710-727 GO:0007602 denotes phototransduction
T7110 731-744 GO:0001750 denotes outer segment
T7111 779-788 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T7112 792-795 CL:0000604 denotes rod
T7113 805-810 SO_EXT:0000704 denotes genes
T7114 820-829 PR_EXT:000001245 denotes rhodopsin
T7115 850-854 CL:0000573 denotes cone
T7116 890-899 SO_EXT:sequence_alteration_entity_or_process denotes Mutations
T7117 903-906 PR_EXT:000005904 denotes Crx
T7118 965-978 GO_EXT:transcription denotes transcription
T7119 965-985 GO_EXT:transcription_factor denotes transcription factor
T7120 986-994 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T7121 1006-1019 CL:0000210 denotes photoreceptor

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7022 0-3 PR:000005904 denotes Crx
T7023 33-46 CL:0000210 denotes photoreceptor
T7024 71-76 NCBITaxon:9606 denotes human
T7025 88-92 CL:0000573 denotes cone
T7026 93-96 CL:0000604 denotes rod
T7027 192-196 CL:0000573 denotes cone
T7028 197-200 CL:0000604 denotes rod
T7029 249-253 CL:0000573 denotes cone
T7030 263-269 GO:0007601 denotes vision
T7031 293-297 UBERON:0000104 denotes life
T7032 347-350 CL:0000604 denotes rod
T7033 360-366 GO:0007601 denotes vision
T7034 419-422 CL:0000604 denotes rod
T7035 453-457 CL:0000573 denotes cone
T7036 467-473 GO:0007601 denotes vision
T7037 502-507 SO:0000704 denotes genes
T7038 524-529 NCBITaxon:9606 denotes human
T7039 530-537 SO:0000704 denotes genetic
T7040 565-574 GO:0010467 denotes expressed
T7041 614-628 CL:0000210 denotes photoreceptors
T7042 650-663 GO:0001750 denotes outer segment
T7043 710-727 GO:0007602 denotes phototransduction
T7044 731-744 GO:0001750 denotes outer segment
T7045 792-795 CL:0000604 denotes rod
T7046 805-810 SO:0000704 denotes genes
T7047 820-829 PR:000001245 denotes rhodopsin
T7048 850-854 CL:0000573 denotes cone
T7049 903-906 PR:000005904 denotes Crx
T7050 1006-1019 CL:0000210 denotes photoreceptor

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7168 0-3 NN denotes Crx
T7169 13-23 VBN denotes implicated
T7170 4-7 VBZ denotes has
T7171 8-12 VBN denotes been
T7172 24-26 IN denotes in
T7173 27-32 CD denotes three
T7174 47-55 NNS denotes diseases
T7175 33-46 NN denotes photoreceptor
T7176 56-60 WDT denotes that
T7177 61-67 VBP denotes result
T7178 68-70 IN denotes in
T7179 71-76 JJ denotes human
T7180 77-86 NN denotes blindness
T7181 86-88 , denotes ,
T7182 88-92 NN denotes cone
T7183 93-96 NN denotes rod
T7184 92-93 HYPH denotes -
T7185 97-107 NN denotes dystrophy2
T7186 107-109 , denotes ,
T7187 109-114 NNP denotes Leber
T7188 128-137 NN denotes amaurosis
T7189 114-116 POS denotes 's
T7190 117-127 JJ denotes congenital
T7191 137-139 , denotes ,
T7192 139-142 CC denotes and
T7193 143-152 NN denotes retinitis
T7194 153-163 NN denotes pigmentosa
T7195 164-165 -LRB- denotes (
T7196 177-180 VB denotes see
T7197 165-168 IN denotes for
T7198 169-175 NN denotes review
T7199 175-177 , denotes ,
T7200 181-182 -LRB- denotes [
T7201 182-184 CD denotes 53
T7202 184-185 -RRB- denotes ]
T7203 185-186 -RRB- denotes )
T7204 186-187 . denotes .
T7205 187-372 sentence denotes The cone-rod dystrophies (CRDs) are characterized by loss of cone-mediated vision in the first decade of life or later, with concomitant or subsequent loss of rod-mediated vision [54].
T7206 188-191 DT denotes The
T7207 201-212 NNS denotes dystrophies
T7208 192-196 NN denotes cone
T7209 197-200 NN denotes rod
T7210 196-197 HYPH denotes -
T7211 224-237 VBN denotes characterized
T7212 213-214 -LRB- denotes (
T7213 214-218 NNS denotes CRDs
T7214 218-219 -RRB- denotes )
T7215 220-223 VBP denotes are
T7216 238-240 IN denotes by
T7217 241-245 NN denotes loss
T7218 246-248 IN denotes of
T7219 249-253 NN denotes cone
T7220 254-262 VBN denotes mediated
T7221 253-254 HYPH denotes -
T7222 263-269 NN denotes vision
T7223 270-272 IN denotes in
T7224 273-276 DT denotes the
T7225 283-289 NN denotes decade
T7226 277-282 JJ denotes first
T7227 290-292 IN denotes of
T7228 293-297 NN denotes life
T7229 298-300 CC denotes or
T7230 301-306 RB denotes later
T7231 308-312 IN denotes with
T7232 306-308 , denotes ,
T7233 313-324 JJ denotes concomitant
T7234 339-343 NN denotes loss
T7235 325-327 CC denotes or
T7236 328-338 JJ denotes subsequent
T7237 344-346 IN denotes of
T7238 347-350 NN denotes rod
T7239 351-359 VBN denotes mediated
T7240 350-351 HYPH denotes -
T7241 360-366 NN denotes vision
T7242 367-368 -LRB- denotes [
T7243 368-370 CD denotes 54
T7244 370-371 -RRB- denotes ]
T7245 371-372 . denotes .
T7246 372-479 sentence denotes Conversely, RP is notable for initial loss of rod function, followed by loss of cone-mediated vision [55].
T7247 373-383 RB denotes Conversely
T7248 388-390 VBZ denotes is
T7249 383-385 , denotes ,
T7250 385-387 NN denotes RP
T7251 391-398 JJ denotes notable
T7252 399-402 IN denotes for
T7253 403-410 JJ denotes initial
T7254 411-415 NN denotes loss
T7255 416-418 IN denotes of
T7256 419-422 NN denotes rod
T7257 423-431 NN denotes function
T7258 431-433 , denotes ,
T7259 433-441 VBN denotes followed
T7260 442-444 IN denotes by
T7261 445-449 NN denotes loss
T7262 450-452 IN denotes of
T7263 453-457 NN denotes cone
T7264 458-466 VBN denotes mediated
T7265 457-458 HYPH denotes -
T7266 467-473 NN denotes vision
T7267 474-475 -LRB- denotes [
T7268 475-477 CD denotes 55
T7269 477-478 -RRB- denotes ]
T7270 478-479 . denotes .
T7271 479-669 sentence denotes The majority of known genes responsible for human genetic blindness, encode proteins expressed almost exclusively, or exclusively, in photoreceptors, particularly in the outer segment [35].
T7272 480-483 DT denotes The
T7273 484-492 NN denotes majority
T7274 549-555 VBP denotes encode
T7275 493-495 IN denotes of
T7276 496-501 JJ denotes known
T7277 502-507 NNS denotes genes
T7278 508-519 JJ denotes responsible
T7279 520-523 IN denotes for
T7280 524-529 JJ denotes human
T7281 538-547 NN denotes blindness
T7282 530-537 JJ denotes genetic
T7283 547-549 , denotes ,
T7284 556-564 NN denotes proteins
T7285 565-574 VBN denotes expressed
T7286 575-581 RB denotes almost
T7287 582-593 RB denotes exclusively
T7288 611-613 IN denotes in
T7289 593-595 , denotes ,
T7290 595-597 CC denotes or
T7291 598-609 RB denotes exclusively
T7292 609-611 , denotes ,
T7293 614-628 NNS denotes photoreceptors
T7294 628-630 , denotes ,
T7295 630-642 RB denotes particularly
T7296 643-645 IN denotes in
T7297 646-649 DT denotes the
T7298 656-663 NN denotes segment
T7299 650-655 JJ denotes outer
T7300 664-665 -LRB- denotes [
T7301 665-667 CD denotes 35
T7302 667-668 -RRB- denotes ]
T7303 668-669 . denotes .
T7304 669-755 sentence denotes Many of these proteins are required for phototransduction or outer segment structure.
T7305 670-674 JJ denotes Many
T7306 697-705 VBN denotes required
T7307 675-677 IN denotes of
T7308 678-683 DT denotes these
T7309 684-692 NN denotes proteins
T7310 693-696 VBP denotes are
T7311 706-709 IN denotes for
T7312 710-727 NN denotes phototransduction
T7313 728-730 CC denotes or
T7314 731-736 JJ denotes outer
T7315 737-744 NN denotes segment
T7316 745-754 NN denotes structure
T7317 754-755 . denotes .
T7318 755-889 sentence denotes The mechanisms whereby mutations in rod-specific genes, such as rhodopsin, lead eventually to cone degeneration in RP remain obscure.
T7319 756-759 DT denotes The
T7320 760-770 NNS denotes mechanisms
T7321 874-880 VBP denotes remain
T7322 771-778 WRB denotes whereby
T7323 831-835 VBP denotes lead
T7324 779-788 NNS denotes mutations
T7325 789-791 IN denotes in
T7326 792-795 NN denotes rod
T7327 796-804 JJ denotes specific
T7328 795-796 HYPH denotes -
T7329 805-810 NNS denotes genes
T7330 810-812 , denotes ,
T7331 812-816 JJ denotes such
T7332 817-819 IN denotes as
T7333 820-829 NN denotes rhodopsin
T7334 829-831 , denotes ,
T7335 836-846 RB denotes eventually
T7336 847-849 IN denotes to
T7337 850-854 NN denotes cone
T7338 855-867 NN denotes degeneration
T7339 868-870 IN denotes in
T7340 871-873 NN denotes RP
T7341 881-888 JJ denotes obscure
T7342 888-889 . denotes .
T7343 889-1028 sentence denotes Mutations in Crx were the first, and still one of a very few examples of a transcription factor mutation leading to photoreceptor disease.
T7344 890-899 NNS denotes Mutations
T7345 907-911 VBD denotes were
T7346 900-902 IN denotes in
T7347 903-906 NN denotes Crx
T7348 912-915 DT denotes the
T7349 916-921 JJ denotes first
T7350 921-923 , denotes ,
T7351 923-926 CC denotes and
T7352 927-932 RB denotes still
T7353 933-936 CD denotes one
T7354 951-959 NNS denotes examples
T7355 937-939 IN denotes of
T7356 940-941 DT denotes a
T7357 947-950 JJ denotes few
T7358 942-946 RB denotes very
T7359 960-962 IN denotes of
T7360 963-964 DT denotes a
T7361 986-994 NN denotes mutation
T7362 965-978 NN denotes transcription
T7363 979-985 NN denotes factor
T7364 995-1002 VBG denotes leading
T7365 1003-1005 IN denotes to
T7366 1006-1019 NN denotes photoreceptor
T7367 1020-1027 NN denotes disease
T7368 1027-1028 . denotes .
R4255 T7168 T7169 nsubjpass Crx,implicated
R4256 T7170 T7169 aux has,implicated
R4257 T7171 T7169 auxpass been,implicated
R4258 T7172 T7169 prep in,implicated
R4259 T7173 T7174 nummod three,diseases
R4260 T7174 T7172 pobj diseases,in
R4261 T7175 T7174 compound photoreceptor,diseases
R4262 T7176 T7177 dep that,result
R4263 T7177 T7174 relcl result,diseases
R4264 T7178 T7177 prep in,result
R4265 T7179 T7180 amod human,blindness
R4266 T7180 T7178 pobj blindness,in
R4267 T7181 T7180 punct ", ",blindness
R4268 T7182 T7183 compound cone,rod
R4269 T7183 T7185 compound rod,dystrophy2
R4270 T7184 T7183 punct -,rod
R4271 T7185 T7180 conj dystrophy2,blindness
R4272 T7186 T7185 punct ", ",dystrophy2
R4273 T7187 T7188 poss Leber,amaurosis
R4274 T7188 T7185 conj amaurosis,dystrophy2
R4275 T7189 T7187 case 's,Leber
R4276 T7190 T7188 amod congenital,amaurosis
R4277 T7191 T7188 punct ", ",amaurosis
R4278 T7192 T7188 cc and,amaurosis
R4279 T7193 T7194 compound retinitis,pigmentosa
R4280 T7194 T7188 conj pigmentosa,amaurosis
R4281 T7195 T7196 punct (,see
R4282 T7196 T7169 parataxis see,implicated
R4283 T7197 T7196 prep for,see
R4284 T7198 T7197 pobj review,for
R4285 T7199 T7196 punct ", ",see
R4286 T7200 T7196 punct [,see
R4287 T7201 T7196 dobj 53,see
R4288 T7202 T7196 punct ],see
R4289 T7203 T7196 punct ),see
R4290 T7204 T7169 punct .,implicated
R4291 T7206 T7207 det The,dystrophies
R4292 T7207 T7211 nsubjpass dystrophies,characterized
R4293 T7208 T7209 compound cone,rod
R4294 T7209 T7207 compound rod,dystrophies
R4295 T7210 T7209 punct -,rod
R4296 T7212 T7207 punct (,dystrophies
R4297 T7213 T7207 appos CRDs,dystrophies
R4298 T7214 T7207 punct ),dystrophies
R4299 T7215 T7211 auxpass are,characterized
R4300 T7216 T7211 agent by,characterized
R4301 T7217 T7216 pobj loss,by
R4302 T7218 T7217 prep of,loss
R4303 T7219 T7220 npadvmod cone,mediated
R4304 T7220 T7222 amod mediated,vision
R4305 T7221 T7220 punct -,mediated
R4306 T7222 T7218 pobj vision,of
R4307 T7223 T7211 prep in,characterized
R4308 T7224 T7225 det the,decade
R4309 T7225 T7223 pobj decade,in
R4310 T7226 T7225 amod first,decade
R4311 T7227 T7225 prep of,decade
R4312 T7228 T7227 pobj life,of
R4313 T7229 T7211 cc or,characterized
R4314 T7230 T7231 advmod later,with
R4315 T7231 T7211 conj with,characterized
R4316 T7232 T7231 punct ", ",with
R4317 T7233 T7234 amod concomitant,loss
R4318 T7234 T7231 pobj loss,with
R4319 T7235 T7233 cc or,concomitant
R4320 T7236 T7233 conj subsequent,concomitant
R4321 T7237 T7234 prep of,loss
R4322 T7238 T7239 npadvmod rod,mediated
R4323 T7239 T7241 amod mediated,vision
R4324 T7240 T7239 punct -,mediated
R4325 T7241 T7237 pobj vision,of
R4326 T7242 T7243 punct [,54
R4327 T7243 T7231 parataxis 54,with
R4328 T7244 T7243 punct ],54
R4329 T7245 T7211 punct .,characterized
R4330 T7247 T7248 advmod Conversely,is
R4331 T7249 T7248 punct ", ",is
R4332 T7250 T7248 nsubj RP,is
R4333 T7251 T7248 acomp notable,is
R4334 T7252 T7251 prep for,notable
R4335 T7253 T7254 amod initial,loss
R4336 T7254 T7252 pobj loss,for
R4337 T7255 T7254 prep of,loss
R4338 T7256 T7257 compound rod,function
R4339 T7257 T7255 pobj function,of
R4340 T7258 T7254 punct ", ",loss
R4341 T7259 T7254 acl followed,loss
R4342 T7260 T7259 agent by,followed
R4343 T7261 T7260 pobj loss,by
R4344 T7262 T7261 prep of,loss
R4345 T7263 T7264 npadvmod cone,mediated
R4346 T7264 T7266 amod mediated,vision
R4347 T7265 T7264 punct -,mediated
R4348 T7266 T7262 pobj vision,of
R4349 T7267 T7268 punct [,55
R4350 T7268 T7248 parataxis 55,is
R4351 T7269 T7268 punct ],55
R4352 T7270 T7248 punct .,is
R4353 T7272 T7273 det The,majority
R4354 T7273 T7274 nsubj majority,encode
R4355 T7275 T7273 prep of,majority
R4356 T7276 T7277 amod known,genes
R4357 T7277 T7275 pobj genes,of
R4358 T7278 T7277 amod responsible,genes
R4359 T7279 T7278 prep for,responsible
R4360 T7280 T7281 amod human,blindness
R4361 T7281 T7279 pobj blindness,for
R4362 T7282 T7281 amod genetic,blindness
R4363 T7283 T7274 punct ", ",encode
R4364 T7284 T7274 dobj proteins,encode
R4365 T7285 T7284 acl expressed,proteins
R4366 T7286 T7287 advmod almost,exclusively
R4367 T7287 T7288 advmod exclusively,in
R4368 T7288 T7285 prep in,expressed
R4369 T7289 T7287 punct ", ",exclusively
R4370 T7290 T7287 cc or,exclusively
R4371 T7291 T7287 conj exclusively,exclusively
R4372 T7292 T7288 punct ", ",in
R4373 T7293 T7288 pobj photoreceptors,in
R4374 T7294 T7293 punct ", ",photoreceptors
R4375 T7295 T7296 advmod particularly,in
R4376 T7296 T7293 prep in,photoreceptors
R4377 T7297 T7298 det the,segment
R4378 T7298 T7296 pobj segment,in
R4379 T7299 T7298 amod outer,segment
R4380 T7300 T7301 punct [,35
R4381 T7301 T7274 parataxis 35,encode
R4382 T7302 T7301 punct ],35
R4383 T7303 T7274 punct .,encode
R4384 T7305 T7306 nsubjpass Many,required
R4385 T7307 T7305 prep of,Many
R4386 T7308 T7309 det these,proteins
R4387 T7309 T7307 pobj proteins,of
R4388 T7310 T7306 auxpass are,required
R4389 T7311 T7306 prep for,required
R4390 T7312 T7311 pobj phototransduction,for
R4391 T7313 T7312 cc or,phototransduction
R4392 T7314 T7315 amod outer,segment
R4393 T7315 T7316 compound segment,structure
R4394 T7316 T7312 conj structure,phototransduction
R4395 T7317 T7306 punct .,required
R4396 T7319 T7320 det The,mechanisms
R4397 T7320 T7321 nsubj mechanisms,remain
R4398 T7322 T7323 advmod whereby,lead
R4399 T7323 T7320 relcl lead,mechanisms
R4400 T7324 T7323 nsubj mutations,lead
R4401 T7325 T7324 prep in,mutations
R4402 T7326 T7327 npadvmod rod,specific
R4403 T7327 T7329 amod specific,genes
R4404 T7328 T7327 punct -,specific
R4405 T7329 T7325 pobj genes,in
R4406 T7330 T7329 punct ", ",genes
R4407 T7331 T7332 amod such,as
R4408 T7332 T7329 prep as,genes
R4409 T7333 T7332 pobj rhodopsin,as
R4410 T7334 T7323 punct ", ",lead
R4411 T7335 T7323 advmod eventually,lead
R4412 T7336 T7323 prep to,lead
R4413 T7337 T7338 compound cone,degeneration
R4414 T7338 T7336 pobj degeneration,to
R4415 T7339 T7323 prep in,lead
R4416 T7340 T7339 pobj RP,in
R4417 T7341 T7321 acomp obscure,remain
R4418 T7342 T7321 punct .,remain
R4419 T7344 T7345 nsubj Mutations,were
R4420 T7346 T7344 prep in,Mutations
R4421 T7347 T7346 pobj Crx,in
R4422 T7348 T7349 det the,first
R4423 T7349 T7345 attr first,were
R4424 T7350 T7349 punct ", ",first
R4425 T7351 T7349 cc and,first
R4426 T7352 T7353 advmod still,one
R4427 T7353 T7354 nummod one,examples
R4428 T7354 T7349 conj examples,first
R4429 T7355 T7353 prep of,one
R4430 T7356 T7357 det a,few
R4431 T7357 T7355 pobj few,of
R4432 T7358 T7357 advmod very,few
R4433 T7359 T7349 prep of,first
R4434 T7360 T7361 det a,mutation
R4435 T7361 T7359 pobj mutation,of
R4436 T7362 T7363 compound transcription,factor
R4437 T7363 T7361 compound factor,mutation
R4438 T7364 T7361 acl leading,mutation
R4439 T7365 T7364 prep to,leading
R4440 T7366 T7367 compound photoreceptor,disease
R4441 T7367 T7365 pobj disease,to
R4442 T7368 T7345 punct .,were