> top > docs > PMC:548520 > spans > 16491-17555 > annotations

PMC:548520 / 16491-17555 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9420 23-31 CHEBI:10545 denotes electron
T9421 51-72 UBERON:0001790 denotes outer plexiform layer
T9422 76-79 PR_EXT:000005904 denotes Crx
T9423 79-80 SO_EXT:sequence_nullness_or_absence denotes -
T9424 81-82 SO_EXT:sequence_nullness_or_absence denotes -
T9425 83-90 UBERON:0000966 denotes retinas
T9426 99-102 PR_EXT:000005904 denotes Crx
T9427 102-103 SO_EXT:normal_or_wild_type_or_present denotes +
T9428 104-105 SO_EXT:normal_or_wild_type_or_present denotes +
T9429 106-112 UBERON:0000966 denotes retina
T9430 134-137 CL:0000604 denotes rod
T9431 134-147 GO:0044317 denotes rod spherules
T9432 200-209 GO:0044317 denotes spherules
T9433 263-270 GO:0045202 denotes synapse
T9434 296-300 CL:0000573 denotes Cone
T9435 301-310 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminals
T9436 328-336 GO:0044316 denotes pedicles
T9437 368-376 GO:0045202 denotes synapses
T9438 416-425 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminals
T9439 460-463 PR_EXT:000005904 denotes Crx
T9440 463-464 SO_EXT:normal_or_wild_type_or_present denotes +
T9441 465-466 SO_EXT:normal_or_wild_type_or_present denotes +
T9442 515-536 _FRAGMENT denotes outer plexiform layer
T9443 543-545 _FRAGMENT denotes of
T9444 553-560 UBERON:0001790 denotes retinas
T9445 538-541 _FRAGMENT denotes OPL
T9446 546-549 PR_EXT:000005904 denotes Crx
T9447 549-550 SO_EXT:sequence_nullness_or_absence denotes -
T9448 551-552 SO_EXT:sequence_nullness_or_absence denotes -
T9449 562-575 CL:0000210 denotes photoreceptor
T9450 576-585 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminals
T9451 644-652 GO:0044316 denotes pedicles
T9452 657-666 GO:0044317 denotes spherules
T9453 694-703 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminals
T9454 795-813 GO:0044456 denotes synapse components
T9455 820-829 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminals
T9456 925-933 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminal
T9457 978-986 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminal
T9458 1019-1022 UBERON:0001790 denotes opl
T9459 1024-1045 UBERON:0001790 denotes outer plexiform layer
R5740 T9443 T9442 _lexicallyChainedTo of,outer plexiform layer
R5741 T9443 T9445 _lexicallyChainedTo of,OPL
R5742 T9444 T9443 _lexicallyChainedTo retinas,of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9395 23-31 CHEBI:10545 denotes electron
T9396 51-72 UBERON:0001790 denotes outer plexiform layer
T9397 76-79 PR:000005904 denotes Crx
T9398 83-90 UBERON:0000966 denotes retinas
T9399 99-102 PR:000005904 denotes Crx
T9400 106-112 UBERON:0000966 denotes retina
T9401 134-137 CL:0000604 denotes rod
T9402 134-147 GO:0044317 denotes rod spherules
T9403 200-209 GO:0044317 denotes spherules
T9404 263-270 GO:0045202 denotes synapse
T9405 296-300 CL:0000573 denotes Cone
T9406 328-336 GO:0044316 denotes pedicles
T9407 368-376 GO:0045202 denotes synapses
T9408 460-463 PR:000005904 denotes Crx
T9409 515-536 _FRAGMENT denotes outer plexiform layer
T9410 543-545 _FRAGMENT denotes of
T9411 553-560 UBERON:0001790 denotes retinas
T9412 538-541 _FRAGMENT denotes OPL
T9413 546-549 PR:000005904 denotes Crx
T9414 562-575 CL:0000210 denotes photoreceptor
T9415 644-652 GO:0044316 denotes pedicles
T9416 657-666 GO:0044317 denotes spherules
T9417 795-813 GO:0044456 denotes synapse components
T9418 1019-1022 UBERON:0001790 denotes opl
T9419 1024-1045 UBERON:0001790 denotes outer plexiform layer
R5737 T9410 T9409 _lexicallyChainedTo of,outer plexiform layer
R5738 T9410 T9412 _lexicallyChainedTo of,OPL
R5739 T9411 T9410 _lexicallyChainedTo retinas,of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T9460 10-22 NN denotes Transmission
T9461 32-43 NNS denotes micrographs
T9462 23-31 NN denotes electron
T9463 44-46 IN denotes of
T9464 47-50 DT denotes the
T9465 67-72 NN denotes layer
T9466 51-56 JJ denotes outer
T9467 57-66 NN denotes plexiform
T9468 73-75 IN denotes in
T9469 76-79 NN denotes Crx
T9470 83-90 NNS denotes retinas
T9471 79-80 SYM denotes -
T9472 80-81 HYPH denotes /
T9473 81-82 SYM denotes -
T9474 90-91 . denotes .
T9475 91-195 sentence denotes (A) In Crx+/+ retina at P21, newly formed rod spherules were abundant (arrow demonstrates one example).
T9476 92-93 -LRB- denotes (
T9477 93-94 LS denotes A
T9478 148-152 VBD denotes were
T9479 94-95 -RRB- denotes )
T9480 96-98 IN denotes In
T9481 99-102 NN denotes Crx
T9482 106-112 NN denotes retina
T9483 102-103 SYM denotes +
T9484 103-104 HYPH denotes /
T9485 104-105 SYM denotes +
T9486 113-115 IN denotes at
T9487 116-119 NN denotes P21
T9488 119-121 , denotes ,
T9489 121-126 RB denotes newly
T9490 127-133 VBN denotes formed
T9491 138-147 NNS denotes spherules
T9492 134-137 NN denotes rod
T9493 153-161 JJ denotes abundant
T9494 162-163 -LRB- denotes (
T9495 169-181 VBZ denotes demonstrates
T9496 163-168 NN denotes arrow
T9497 182-185 CD denotes one
T9498 186-193 NN denotes example
T9499 193-194 -RRB- denotes )
T9500 194-195 . denotes .
T9501 195-295 sentence denotes The spherules were club-shaped and contained a single invaginating synapse with one ribbon complex.
T9502 196-199 DT denotes The
T9503 200-209 NNS denotes spherules
T9504 210-214 VBD denotes were
T9505 215-219 NN denotes club
T9506 220-226 VBN denotes shaped
T9507 219-220 HYPH denotes -
T9508 227-230 CC denotes and
T9509 231-240 VBD denotes contained
T9510 241-242 DT denotes a
T9511 263-270 NN denotes synapse
T9512 243-249 JJ denotes single
T9513 250-262 VBG denotes invaginating
T9514 271-275 IN denotes with
T9515 276-279 CD denotes one
T9516 287-294 NN denotes complex
T9517 280-286 NN denotes ribbon
T9518 294-295 . denotes .
T9519 295-409 sentence denotes Cone terminals form large, flat pedicles that contain many invaginating synapses with separate ribbon structures.
T9520 296-300 NN denotes Cone
T9521 301-310 NNS denotes terminals
T9522 311-315 VBP denotes form
T9523 316-321 JJ denotes large
T9524 328-336 NNS denotes pedicles
T9525 321-323 , denotes ,
T9526 323-327 JJ denotes flat
T9527 337-341 WDT denotes that
T9528 342-349 VBP denotes contain
T9529 350-354 JJ denotes many
T9530 368-376 NNS denotes synapses
T9531 355-367 VBG denotes invaginating
T9532 377-381 IN denotes with
T9533 382-390 JJ denotes separate
T9534 398-408 NNS denotes structures
T9535 391-397 NN denotes ribbon
T9536 408-409 . denotes .
T9537 409-503 sentence denotes These terminals were more scarce, but apparent in Crx+/+ retinas at P21 (one example in box).
T9538 410-415 DT denotes These
T9539 416-425 NNS denotes terminals
T9540 426-430 VBD denotes were
T9541 431-435 RBR denotes more
T9542 436-442 JJ denotes scarce
T9543 442-444 , denotes ,
T9544 444-447 CC denotes but
T9545 448-456 JJ denotes apparent
T9546 457-459 IN denotes in
T9547 460-463 NN denotes Crx
T9548 467-474 NNS denotes retinas
T9549 463-464 SYM denotes +
T9550 464-465 HYPH denotes /
T9551 465-466 SYM denotes +
T9552 475-477 IN denotes at
T9553 478-481 NN denotes P21
T9554 482-483 -LRB- denotes (
T9555 487-494 NN denotes example
T9556 483-486 CD denotes one
T9557 495-497 IN denotes in
T9558 498-501 NN denotes box
T9559 501-502 -RRB- denotes )
T9560 502-503 . denotes .
T9561 503-631 sentence denotes (B) In the outer plexiform layer (OPL) of Crx-/- retinas, photoreceptor terminals appeared highly disorganized at P21 (arrows).
T9562 504-505 -LRB- denotes (
T9563 505-506 LS denotes B
T9564 586-594 VBD denotes appeared
T9565 506-507 -RRB- denotes )
T9566 508-510 IN denotes In
T9567 511-514 DT denotes the
T9568 531-536 NN denotes layer
T9569 515-520 JJ denotes outer
T9570 521-530 NN denotes plexiform
T9571 537-538 -LRB- denotes (
T9572 538-541 NN denotes OPL
T9573 541-542 -RRB- denotes )
T9574 543-545 IN denotes of
T9575 546-549 NN denotes Crx
T9576 553-560 NNS denotes retinas
T9577 549-550 SYM denotes -
T9578 550-551 HYPH denotes /
T9579 551-552 SYM denotes -
T9580 560-562 , denotes ,
T9581 562-575 NN denotes photoreceptor
T9582 576-585 NNS denotes terminals
T9583 595-601 RB denotes highly
T9584 602-614 JJ denotes disorganized
T9585 615-617 IN denotes at
T9586 618-621 NN denotes P21
T9587 622-623 -LRB- denotes (
T9588 623-629 NNS denotes arrows
T9589 629-630 -RRB- denotes )
T9590 630-631 . denotes .
T9591 631-684 sentence denotes Well-formed pedicles and spherules were not evident.
T9592 632-636 RB denotes Well
T9593 637-643 VBN denotes formed
T9594 636-637 HYPH denotes -
T9595 644-652 NNS denotes pedicles
T9596 667-671 VBD denotes were
T9597 653-656 CC denotes and
T9598 657-666 NNS denotes spherules
T9599 672-675 RB denotes not
T9600 676-683 JJ denotes evident
T9601 683-684 . denotes .
T9602 684-814 sentence denotes Putative terminals containing ribbon-like structures were apparent, suggesting at least limited generation of synapse components.
T9603 685-693 JJ denotes Putative
T9604 694-703 NNS denotes terminals
T9605 738-742 VBD denotes were
T9606 704-714 VBG denotes containing
T9607 715-721 NN denotes ribbon
T9608 722-726 JJ denotes like
T9609 721-722 HYPH denotes -
T9610 727-737 NNS denotes structures
T9611 743-751 JJ denotes apparent
T9612 751-753 , denotes ,
T9613 753-763 VBG denotes suggesting
T9614 764-766 RB denotes at
T9615 767-772 RBS denotes least
T9616 773-780 JJ denotes limited
T9617 781-791 NN denotes generation
T9618 792-794 IN denotes of
T9619 795-802 NN denotes synapse
T9620 803-813 NNS denotes components
T9621 813-814 . denotes .
T9622 814-911 sentence denotes Many terminals appeared to contain multiple ribbon-like structures, instead of a singule ribbon.
T9623 815-819 JJ denotes Many
T9624 820-829 NNS denotes terminals
T9625 830-838 VBD denotes appeared
T9626 839-841 TO denotes to
T9627 842-849 VB denotes contain
T9628 850-858 JJ denotes multiple
T9629 871-881 NNS denotes structures
T9630 859-865 NN denotes ribbon
T9631 866-870 JJ denotes like
T9632 865-866 HYPH denotes -
T9633 881-883 , denotes ,
T9634 883-890 RB denotes instead
T9635 891-893 IN denotes of
T9636 894-895 DT denotes a
T9637 904-910 NN denotes ribbon
T9638 896-903 JJ denotes singule
T9639 910-911 . denotes .
T9640 911-1018 sentence denotes For example, terminal 1 and 2 contained two ribbons each, whereas terminal 3 appeared to contain only one.
T9641 912-915 IN denotes For
T9642 942-951 VBD denotes contained
T9643 916-923 NN denotes example
T9644 923-925 , denotes ,
T9645 925-933 NN denotes terminal
T9646 934-935 CD denotes 1
T9647 936-939 CC denotes and
T9648 940-941 CD denotes 2
T9649 952-955 CD denotes two
T9650 956-963 NNS denotes ribbons
T9651 964-968 DT denotes each
T9652 968-970 , denotes ,
T9653 970-977 IN denotes whereas
T9654 989-997 VBD denotes appeared
T9655 978-986 NN denotes terminal
T9656 987-988 CD denotes 3
T9657 998-1000 TO denotes to
T9658 1001-1008 VB denotes contain
T9659 1009-1013 RB denotes only
T9660 1014-1017 CD denotes one
T9661 1017-1018 . denotes .
T9662 1018-1046 sentence denotes opl, outer plexiform layer.
T9663 1019-1022 NN denotes opl
T9664 1022-1024 , denotes ,
T9665 1024-1029 JJ denotes outer
T9666 1040-1045 NN denotes layer
T9667 1030-1039 NN denotes plexiform
T9668 1045-1046 . denotes .
T9669 1046-1064 sentence denotes Scale bar = 2 μm.
T9670 1047-1052 NN denotes Scale
T9671 1053-1056 NN denotes bar
T9672 1061-1063 NN denotes μm
T9673 1057-1058 SYM denotes =
T9674 1059-1060 CD denotes 2
T9675 1063-1064 . denotes .
R5743 T9460 T9461 compound Transmission,micrographs
R5744 T9462 T9461 compound electron,micrographs
R5745 T9463 T9461 prep of,micrographs
R5746 T9464 T9465 det the,layer
R5747 T9465 T9463 pobj layer,of
R5748 T9466 T9467 amod outer,plexiform
R5749 T9467 T9465 compound plexiform,layer
R5750 T9468 T9461 prep in,micrographs
R5751 T9469 T9470 nmod Crx,retinas
R5752 T9470 T9468 pobj retinas,in
R5753 T9471 T9469 punct -,Crx
R5754 T9472 T9469 punct /,Crx
R5755 T9473 T9469 punct -,Crx
R5756 T9474 T9461 punct .,micrographs
R5757 T9476 T9477 punct (,A
R5758 T9477 T9478 meta A,were
R5759 T9479 T9477 punct ),A
R5760 T9480 T9478 prep In,were
R5761 T9481 T9482 nmod Crx,retina
R5762 T9482 T9480 pobj retina,In
R5763 T9483 T9481 punct +,Crx
R5764 T9484 T9481 punct /,Crx
R5765 T9485 T9481 punct +,Crx
R5766 T9486 T9478 prep at,were
R5767 T9487 T9486 pobj P21,at
R5768 T9488 T9478 punct ", ",were
R5769 T9489 T9490 advmod newly,formed
R5770 T9490 T9491 amod formed,spherules
R5771 T9491 T9478 nsubj spherules,were
R5772 T9492 T9491 compound rod,spherules
R5773 T9493 T9478 acomp abundant,were
R5774 T9494 T9495 punct (,demonstrates
R5775 T9495 T9478 parataxis demonstrates,were
R5776 T9496 T9495 nsubj arrow,demonstrates
R5777 T9497 T9498 nummod one,example
R5778 T9498 T9495 dobj example,demonstrates
R5779 T9499 T9495 punct ),demonstrates
R5780 T9500 T9478 punct .,were
R5781 T9502 T9503 det The,spherules
R5782 T9503 T9504 nsubj spherules,were
R5783 T9505 T9506 npadvmod club,shaped
R5784 T9506 T9504 acomp shaped,were
R5785 T9507 T9506 punct -,shaped
R5786 T9508 T9504 cc and,were
R5787 T9509 T9504 conj contained,were
R5788 T9510 T9511 det a,synapse
R5789 T9511 T9509 dobj synapse,contained
R5790 T9512 T9511 amod single,synapse
R5791 T9513 T9511 amod invaginating,synapse
R5792 T9514 T9511 prep with,synapse
R5793 T9515 T9516 nummod one,complex
R5794 T9516 T9514 pobj complex,with
R5795 T9517 T9516 compound ribbon,complex
R5796 T9518 T9504 punct .,were
R5797 T9520 T9521 compound Cone,terminals
R5798 T9521 T9522 nsubj terminals,form
R5799 T9523 T9524 amod large,pedicles
R5800 T9524 T9522 dobj pedicles,form
R5801 T9525 T9524 punct ", ",pedicles
R5802 T9526 T9524 amod flat,pedicles
R5803 T9527 T9528 dep that,contain
R5804 T9528 T9524 relcl contain,pedicles
R5805 T9529 T9530 amod many,synapses
R5806 T9530 T9528 dobj synapses,contain
R5807 T9531 T9530 amod invaginating,synapses
R5808 T9532 T9530 prep with,synapses
R5809 T9533 T9534 amod separate,structures
R5810 T9534 T9532 pobj structures,with
R5811 T9535 T9534 compound ribbon,structures
R5812 T9536 T9522 punct .,form
R5813 T9538 T9539 det These,terminals
R5814 T9539 T9540 nsubj terminals,were
R5815 T9541 T9542 advmod more,scarce
R5816 T9542 T9540 acomp scarce,were
R5817 T9543 T9542 punct ", ",scarce
R5818 T9544 T9542 cc but,scarce
R5819 T9545 T9542 conj apparent,scarce
R5820 T9546 T9540 prep in,were
R5821 T9547 T9548 nmod Crx,retinas
R5822 T9548 T9546 pobj retinas,in
R5823 T9549 T9547 punct +,Crx
R5824 T9550 T9547 punct /,Crx
R5825 T9551 T9547 punct +,Crx
R5826 T9552 T9540 prep at,were
R5827 T9553 T9552 pobj P21,at
R5828 T9554 T9555 punct (,example
R5829 T9555 T9553 parataxis example,P21
R5830 T9556 T9555 nummod one,example
R5831 T9557 T9555 prep in,example
R5832 T9558 T9557 pobj box,in
R5833 T9559 T9555 punct ),example
R5834 T9560 T9540 punct .,were
R5835 T9562 T9563 punct (,B
R5836 T9563 T9564 meta B,appeared
R5837 T9565 T9563 punct ),B
R5838 T9566 T9564 prep In,appeared
R5839 T9567 T9568 det the,layer
R5840 T9568 T9566 pobj layer,In
R5841 T9569 T9568 amod outer,layer
R5842 T9570 T9568 compound plexiform,layer
R5843 T9571 T9568 punct (,layer
R5844 T9572 T9568 appos OPL,layer
R5845 T9573 T9568 punct ),layer
R5846 T9574 T9568 prep of,layer
R5847 T9575 T9576 nmod Crx,retinas
R5848 T9576 T9574 pobj retinas,of
R5849 T9577 T9575 punct -,Crx
R5850 T9578 T9575 punct /,Crx
R5851 T9579 T9575 punct -,Crx
R5852 T9580 T9564 punct ", ",appeared
R5853 T9581 T9582 compound photoreceptor,terminals
R5854 T9582 T9564 nsubj terminals,appeared
R5855 T9583 T9584 advmod highly,disorganized
R5856 T9584 T9564 oprd disorganized,appeared
R5857 T9585 T9564 prep at,appeared
R5858 T9586 T9585 pobj P21,at
R5859 T9587 T9588 punct (,arrows
R5860 T9588 T9564 parataxis arrows,appeared
R5861 T9589 T9588 punct ),arrows
R5862 T9590 T9564 punct .,appeared
R5863 T9592 T9593 advmod Well,formed
R5864 T9593 T9595 amod formed,pedicles
R5865 T9594 T9593 punct -,formed
R5866 T9595 T9596 nsubj pedicles,were
R5867 T9597 T9595 cc and,pedicles
R5868 T9598 T9595 conj spherules,pedicles
R5869 T9599 T9596 neg not,were
R5870 T9600 T9596 acomp evident,were
R5871 T9601 T9596 punct .,were
R5872 T9603 T9604 amod Putative,terminals
R5873 T9604 T9605 nsubj terminals,were
R5874 T9606 T9604 acl containing,terminals
R5875 T9607 T9608 npadvmod ribbon,like
R5876 T9608 T9610 amod like,structures
R5877 T9609 T9608 punct -,like
R5878 T9610 T9606 dobj structures,containing
R5879 T9611 T9605 acomp apparent,were
R5880 T9612 T9605 punct ", ",were
R5881 T9613 T9605 advcl suggesting,were
R5882 T9614 T9615 advmod at,least
R5883 T9615 T9616 advmod least,limited
R5884 T9616 T9617 amod limited,generation
R5885 T9617 T9613 dobj generation,suggesting
R5886 T9618 T9617 prep of,generation
R5887 T9619 T9620 compound synapse,components
R5888 T9620 T9618 pobj components,of
R5889 T9621 T9605 punct .,were
R5890 T9623 T9624 amod Many,terminals
R5891 T9624 T9625 nsubj terminals,appeared
R5892 T9626 T9627 aux to,contain
R5893 T9627 T9625 xcomp contain,appeared
R5894 T9628 T9629 amod multiple,structures
R5895 T9629 T9627 dobj structures,contain
R5896 T9630 T9631 npadvmod ribbon,like
R5897 T9631 T9629 amod like,structures
R5898 T9632 T9631 punct -,like
R5899 T9633 T9629 punct ", ",structures
R5900 T9634 T9635 advmod instead,of
R5901 T9635 T9629 prep of,structures
R5902 T9636 T9637 det a,ribbon
R5903 T9637 T9635 pobj ribbon,of
R5904 T9638 T9637 amod singule,ribbon
R5905 T9639 T9625 punct .,appeared
R5906 T9641 T9642 prep For,contained
R5907 T9643 T9641 pobj example,For
R5908 T9644 T9642 punct ", ",contained
R5909 T9645 T9646 nmod terminal,1
R5910 T9646 T9642 nsubj 1,contained
R5911 T9647 T9646 cc and,1
R5912 T9648 T9646 conj 2,1
R5913 T9649 T9650 nummod two,ribbons
R5914 T9650 T9642 dobj ribbons,contained
R5915 T9651 T9650 appos each,ribbons
R5916 T9652 T9642 punct ", ",contained
R5917 T9653 T9654 mark whereas,appeared
R5918 T9654 T9642 advcl appeared,contained
R5919 T9655 T9654 nsubj terminal,appeared
R5920 T9656 T9655 nummod 3,terminal
R5921 T9657 T9658 aux to,contain
R5922 T9658 T9654 xcomp contain,appeared
R5923 T9659 T9660 advmod only,one
R5924 T9660 T9658 dobj one,contain
R5925 T9661 T9642 punct .,contained
R5926 T9664 T9663 punct ", ",opl
R5927 T9665 T9666 amod outer,layer
R5928 T9666 T9663 appos layer,opl
R5929 T9667 T9666 compound plexiform,layer
R5930 T9668 T9663 punct .,opl
R5931 T9670 T9671 compound Scale,bar
R5932 T9671 T9672 nsubj bar,μm
R5933 T9673 T9672 punct =,μm
R5934 T9674 T9672 nummod 2,μm
R5935 T9675 T9672 punct .,μm