PMC:539973 / 5980-6721 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/539973","sourcedb":"PMC","sourceid":"539973","source_url":"https://www.ncbi.nlm.nih.gov/pmc/539973","text":"To illustrate the functional and structural content of the PEDANT database, we calculated the coverage of all 1 240 000 annotated protein sequences by three selected popular categories: PFAM sequence motifs (13), SCOP structural domains (14) and MIPS functional role categories (15). As seen in Figure 3, the coverage varies in a wide range—from 64.3% by PFAM to 34.5% by SCOP. Only 15.2% of proteins possess all three attributes emphasizing the usefulness of applying many complementary bioinformatics techniques. The total number of all attributes computed by PEDANT for each sequence exceeds 20. The PEDANT database thus represents a valuable resource for large-scale association rule mining in automatically generated protein annotation.","tracks":[{"project":"2_test","denotations":[{"id":"15608204-14681378-76722523","span":{"begin":208,"end":210},"obj":"14681378"},{"id":"15608204-14681400-76722524","span":{"begin":238,"end":240},"obj":"14681400"},{"id":"15608204-11752246-76722525","span":{"begin":279,"end":281},"obj":"11752246"}],"attributes":[{"subj":"15608204-14681378-76722523","pred":"source","obj":"2_test"},{"subj":"15608204-14681400-76722524","pred":"source","obj":"2_test"},{"subj":"15608204-11752246-76722525","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ec93db","default":true}]}]}}