PMC:539973 / 3883-5124 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/539973","sourcedb":"PMC","sourceid":"539973","source_url":"https://www.ncbi.nlm.nih.gov/pmc/539973","text":"The PEDANT genome database is produced by systematically applying the automatic annotation pipeline described above to all genomic sequences that are being released in the public domain. The major premises of the PEDANT database are as listed below: Timeliness. The MIPS CPU resources make it possible to process a medium-size prokaryotic genome and make it available online essentially overnight.\nCompleteness. We seek to process all completely sequenced genomes as well as many incomplete genomes, which are being made available by sequencing centers. In many cases, PEDANT represents the only source of annotation for a given genome.\nStandardization. Automatic annotation of sequences follows a clearly defined protocol in terms of the particular set of bioinformatics techniques applied to each sequence and the values of pre-determined recognition thresholds used for individual methods (e.g. BLAST E-values).\nDocumentation. Since the results of automatic sequence analyses are inevitably afflicted by a large number of false assignments, we make available the raw output of each bioinformatics method used. This allows the user to make his own judgment on the validity of functional predictions appearing on each protein's report page.","divisions":[{"label":"p","span":{"begin":250,"end":397}},{"label":"p","span":{"begin":398,"end":636}},{"label":"p","span":{"begin":637,"end":914}}],"tracks":[]}