PMC:539297 / 7802-8305
Annnotations
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8165 | 20-24 | PR:000005591 | denotes | Cln3 |
| T8166 | 58-60 | UBERON:0002037 | denotes | Cb |
| T8167 | 60-64 | PR:000005591 | denotes | Cln3 |
| T8168 | 77-81 | PR:000005591 | denotes | Cln3 |
| T8169 | 88-95 | SO:0001030 | denotes | forward |
| T8170 | 97-101 | SO:0000147 | denotes | Exon |
| T8171 | 105-112 | SO:0001031 | denotes | reverse |
| T8172 | 116-128 | SO:0000006 | denotes | PCR products |
| T8173 | 204-209 | UBERON:0000955 | denotes | brain |
| T8174 | 229-234 | UBERON:0000955 | denotes | Brain |
| T8175 | 252-273 | SO:0000006 | denotes | PCR reaction products |
| T8176 | 305-321 | CHEBI:4883 | denotes | ethidium-bromide |
| T8177 | 330-337 | CHEBI:2511 | denotes | agarose |
| T8178 | 357-368 | SO:0000006 | denotes | PCR product |
| T8179 | 487-493 | GO:0008380 | denotes | splice |
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8230 | 68-69 | HYPH | denotes | / |
| T8215 | 10-12 | NN | denotes | RT |
| T8216 | 13-16 | NN | denotes | PCR |
| T8217 | 12-13 | HYPH | denotes | - |
| T8218 | 133-138 | VBN | denotes | shown |
| T8219 | 17-19 | IN | denotes | of |
| T8220 | 20-24 | NN | denotes | Cln3 |
| T8221 | 25-29 | NN | denotes | mRNA |
| T8222 | 30-32 | IN | denotes | in |
| T8223 | 33-37 | JJ | denotes | wild |
| T8224 | 38-42 | NN | denotes | type |
| T8225 | 37-38 | HYPH | denotes | - |
| T8226 | 71-76 | NNS | denotes | cells |
| T8227 | 43-46 | CC | denotes | and |
| T8228 | 47-57 | JJ | denotes | homozygous |
| T8229 | 58-68 | NN | denotes | CbCln3Δex7 |
| T8231 | 69-70 | CD | denotes | 8 |
| T8232 | 77-81 | NN | denotes | Cln3 |
| T8233 | 120-128 | NNS | denotes | products |
| T8234 | 82-87 | NN | denotes | Exon1 |
| T8235 | 88-95 | JJ | denotes | forward |
| T8236 | 87-88 | HYPH | denotes | - |
| T8237 | 105-112 | JJ | denotes | reverse |
| T8238 | 95-97 | , | denotes | , |
| T8239 | 97-101 | NN | denotes | Exon |
| T8240 | 102-104 | CD | denotes | 15 |
| T8241 | 104-105 | HYPH | denotes | - |
| T8242 | 113-115 | NN | denotes | RT |
| T8243 | 116-119 | NN | denotes | PCR |
| T8244 | 115-116 | HYPH | denotes | - |
| T8245 | 129-132 | VBP | denotes | are |
| T8246 | 138-140 | , | denotes | , |
| T8247 | 140-144 | IN | denotes | from |
| T8248 | 145-150 | JJ | denotes | total |
| T8249 | 224-227 | NN | denotes | RNA |
| T8250 | 151-155 | JJ | denotes | wild |
| T8251 | 156-160 | NN | denotes | type |
| T8252 | 155-156 | HYPH | denotes | - |
| T8253 | 161-162 | -LRB- | denotes | ( |
| T8254 | 162-163 | SYM | denotes | + |
| T8255 | 164-165 | SYM | denotes | + |
| T8256 | 163-164 | HYPH | denotes | / |
| T8257 | 165-166 | -RRB- | denotes | ) |
| T8258 | 167-169 | CC | denotes | or |
| T8259 | 170-180 | JJ | denotes | homozygous |
| T8260 | 181-187 | NN | denotes | mutant |
| T8261 | 188-189 | -LRB- | denotes | ( |
| T8262 | 189-193 | NN | denotes | Δex7 |
| T8263 | 193-194 | HYPH | denotes | / |
| T8264 | 194-195 | CD | denotes | 8 |
| T8265 | 195-196 | HYPH | denotes | / |
| T8266 | 196-200 | NN | denotes | Δex7 |
| T8267 | 200-201 | HYPH | denotes | / |
| T8268 | 201-202 | CD | denotes | 8 |
| T8269 | 202-203 | -RRB- | denotes | ) |
| T8270 | 204-209 | NN | denotes | brain |
| T8271 | 210-213 | CC | denotes | and |
| T8272 | 214-218 | NN | denotes | cell |
| T8273 | 219-223 | NN | denotes | line |
| T8274 | 227-228 | . | denotes | . |
| T8275 | 228-343 | sentence | denotes | Brain and cell line RT-PCR reaction products had identical band patterns on ethidium-bromide stained agarose gels. |
| T8276 | 229-234 | NN | denotes | Brain |
| T8277 | 265-273 | NNS | denotes | products |
| T8278 | 235-238 | CC | denotes | and |
| T8279 | 239-243 | NN | denotes | cell |
| T8280 | 244-248 | NN | denotes | line |
| T8281 | 249-251 | NN | denotes | RT |
| T8282 | 252-255 | NN | denotes | PCR |
| T8283 | 251-252 | HYPH | denotes | - |
| T8284 | 256-264 | NN | denotes | reaction |
| T8285 | 274-277 | VBD | denotes | had |
| T8286 | 278-287 | JJ | denotes | identical |
| T8287 | 293-301 | NNS | denotes | patterns |
| T8288 | 288-292 | NN | denotes | band |
| T8289 | 302-304 | IN | denotes | on |
| T8290 | 305-313 | NN | denotes | ethidium |
| T8291 | 314-321 | NN | denotes | bromide |
| T8292 | 313-314 | HYPH | denotes | - |
| T8293 | 322-329 | VBN | denotes | stained |
| T8294 | 338-342 | NNS | denotes | gels |
| T8295 | 330-337 | NN | denotes | agarose |
| T8296 | 342-343 | . | denotes | . |
| T8297 | 343-503 | sentence | denotes | Wild-type RT-PCR product was a single ~1.6 kb band and mutant products were ~1.6, ~1.5, ~1.4, ~1.35, and ~1.3 kb, representing multiple mutant splice variants. |
| T8298 | 344-348 | JJ | denotes | Wild |
| T8299 | 349-353 | NN | denotes | type |
| T8300 | 348-349 | HYPH | denotes | - |
| T8301 | 361-368 | NN | denotes | product |
| T8302 | 354-356 | NN | denotes | RT |
| T8303 | 357-360 | NN | denotes | PCR |
| T8304 | 356-357 | HYPH | denotes | - |
| T8305 | 369-372 | VBD | denotes | was |
| T8306 | 373-374 | DT | denotes | a |
| T8307 | 390-394 | NN | denotes | band |
| T8308 | 375-381 | JJ | denotes | single |
| T8309 | 382-383 | SYM | denotes | ~ |
| T8310 | 383-386 | CD | denotes | 1.6 |
| T8311 | 387-389 | NN | denotes | kb |
| T8312 | 395-398 | CC | denotes | and |
| T8313 | 399-405 | NN | denotes | mutant |
| T8314 | 406-414 | NNS | denotes | products |
| T8315 | 415-419 | VBD | denotes | were |
| T8316 | 420-421 | SYM | denotes | ~ |
| T8317 | 421-424 | CD | denotes | 1.6 |
| T8318 | 454-456 | NN | denotes | kb |
| T8319 | 424-426 | , | denotes | , |
| T8320 | 426-427 | SYM | denotes | ~ |
| T8321 | 427-430 | CD | denotes | 1.5 |
| T8322 | 430-432 | , | denotes | , |
| T8323 | 432-433 | SYM | denotes | ~ |
| T8324 | 433-436 | CD | denotes | 1.4 |
| T8325 | 436-438 | , | denotes | , |
| T8326 | 438-439 | SYM | denotes | ~ |
| T8327 | 439-443 | CD | denotes | 1.35 |
| T8328 | 443-445 | , | denotes | , |
| T8329 | 445-448 | CC | denotes | and |
| T8330 | 449-450 | SYM | denotes | ~ |
| T8331 | 450-453 | NN | denotes | 1.3 |
| T8332 | 456-458 | , | denotes | , |
| T8333 | 458-470 | VBG | denotes | representing |
| T8334 | 471-479 | JJ | denotes | multiple |
| T8335 | 494-502 | NNS | denotes | variants |
| T8336 | 480-486 | NN | denotes | mutant |
| T8337 | 487-493 | NN | denotes | splice |
| T8338 | 502-503 | . | denotes | . |
| R5202 | T8215 | T8216 | compound | RT,PCR |
| R5203 | T8216 | T8218 | dep | PCR,shown |
| R5204 | T8217 | T8216 | punct | -,PCR |
| R5205 | T8219 | T8216 | prep | of,PCR |
| R5206 | T8220 | T8221 | compound | Cln3,mRNA |
| R5207 | T8221 | T8219 | pobj | mRNA,of |
| R5208 | T8222 | T8216 | prep | in,PCR |
| R5209 | T8223 | T8224 | amod | wild,type |
| R5210 | T8224 | T8226 | nmod | type,cells |
| R5211 | T8225 | T8224 | punct | -,type |
| R5212 | T8226 | T8222 | pobj | cells,in |
| R5213 | T8227 | T8224 | cc | and,type |
| R5214 | T8228 | T8224 | conj | homozygous,type |
| R5215 | T8229 | T8226 | nmod | CbCln3Δex7,cells |
| R5216 | T8230 | T8229 | punct | /,CbCln3Δex7 |
| R5217 | T8231 | T8229 | nummod | 8,CbCln3Δex7 |
| R5218 | T8232 | T8233 | nmod | Cln3,products |
| R5219 | T8233 | T8218 | nsubjpass | products,shown |
| R5220 | T8234 | T8235 | npadvmod | Exon1,forward |
| R5221 | T8235 | T8237 | amod | forward,reverse |
| R5222 | T8236 | T8235 | punct | -,forward |
| R5223 | T8237 | T8233 | nmod | reverse,products |
| R5224 | T8238 | T8237 | punct | ", ",reverse |
| R5225 | T8239 | T8237 | npadvmod | Exon,reverse |
| R5226 | T8240 | T8239 | nummod | 15,Exon |
| R5227 | T8241 | T8237 | punct | -,reverse |
| R5228 | T8242 | T8243 | compound | RT,PCR |
| R5229 | T8243 | T8233 | compound | PCR,products |
| R5230 | T8244 | T8243 | punct | -,PCR |
| R5231 | T8245 | T8218 | auxpass | are,shown |
| R5232 | T8246 | T8218 | punct | ", ",shown |
| R5233 | T8247 | T8218 | prep | from,shown |
| R5234 | T8248 | T8249 | amod | total,RNA |
| R5235 | T8249 | T8247 | pobj | RNA,from |
| R5236 | T8250 | T8251 | amod | wild,type |
| R5237 | T8251 | T8249 | nmod | type,RNA |
| R5238 | T8252 | T8251 | punct | -,type |
| R5239 | T8253 | T8251 | punct | (,type |
| R5240 | T8254 | T8255 | punct | +,+ |
| R5241 | T8255 | T8251 | appos | +,type |
| R5242 | T8256 | T8255 | punct | /,+ |
| R5243 | T8257 | T8251 | punct | ),type |
| R5244 | T8258 | T8251 | cc | or,type |
| R5245 | T8259 | T8260 | amod | homozygous,mutant |
| R5246 | T8260 | T8251 | conj | mutant,type |
| R5247 | T8261 | T8260 | punct | (,mutant |
| R5248 | T8262 | T8260 | appos | Δex7,mutant |
| R5249 | T8263 | T8262 | punct | /,Δex7 |
| R5250 | T8264 | T8262 | nummod | 8,Δex7 |
| R5251 | T8265 | T8262 | punct | /,Δex7 |
| R5252 | T8266 | T8262 | appos | Δex7,Δex7 |
| R5253 | T8267 | T8266 | punct | /,Δex7 |
| R5254 | T8268 | T8266 | nummod | 8,Δex7 |
| R5255 | T8269 | T8249 | punct | ),RNA |
| R5256 | T8270 | T8249 | nmod | brain,RNA |
| R5257 | T8271 | T8270 | cc | and,brain |
| R5258 | T8272 | T8273 | compound | cell,line |
| R5259 | T8273 | T8270 | conj | line,brain |
| R5260 | T8274 | T8218 | punct | .,shown |
| R5261 | T8276 | T8277 | nmod | Brain,products |
| R5262 | T8277 | T8285 | nsubj | products,had |
| R5263 | T8278 | T8276 | cc | and,Brain |
| R5264 | T8279 | T8280 | compound | cell,line |
| R5265 | T8280 | T8276 | conj | line,Brain |
| R5266 | T8281 | T8282 | compound | RT,PCR |
| R5267 | T8282 | T8277 | compound | PCR,products |
| R5268 | T8283 | T8282 | punct | -,PCR |
| R5269 | T8284 | T8277 | compound | reaction,products |
| R5270 | T8286 | T8287 | amod | identical,patterns |
| R5271 | T8287 | T8285 | dobj | patterns,had |
| R5272 | T8288 | T8287 | compound | band,patterns |
| R5273 | T8289 | T8285 | prep | on,had |
| R5274 | T8290 | T8291 | compound | ethidium,bromide |
| R5275 | T8291 | T8293 | npadvmod | bromide,stained |
| R5276 | T8292 | T8291 | punct | -,bromide |
| R5277 | T8293 | T8294 | amod | stained,gels |
| R5278 | T8294 | T8289 | pobj | gels,on |
| R5279 | T8295 | T8294 | compound | agarose,gels |
| R5280 | T8296 | T8285 | punct | .,had |
| R5281 | T8298 | T8299 | amod | Wild,type |
| R5282 | T8299 | T8301 | compound | type,product |
| R5283 | T8300 | T8299 | punct | -,type |
| R5284 | T8301 | T8305 | nsubj | product,was |
| R5285 | T8302 | T8303 | compound | RT,PCR |
| R5286 | T8303 | T8301 | compound | PCR,product |
| R5287 | T8304 | T8303 | punct | -,PCR |
| R5288 | T8306 | T8307 | det | a,band |
| R5289 | T8307 | T8305 | attr | band,was |
| R5290 | T8308 | T8307 | amod | single,band |
| R5291 | T8309 | T8310 | punct | ~,1.6 |
| R5292 | T8310 | T8311 | nummod | 1.6,kb |
| R5293 | T8311 | T8307 | compound | kb,band |
| R5294 | T8312 | T8305 | cc | and,was |
| R5295 | T8313 | T8314 | compound | mutant,products |
| R5296 | T8314 | T8315 | nsubj | products,were |
| R5297 | T8315 | T8305 | conj | were,was |
| R5298 | T8316 | T8317 | punct | ~,1.6 |
| R5299 | T8317 | T8318 | nummod | 1.6,kb |
| R5300 | T8318 | T8315 | attr | kb,were |
| R5301 | T8319 | T8317 | punct | ", ",1.6 |
| R5302 | T8320 | T8321 | punct | ~,1.5 |
| R5303 | T8321 | T8317 | conj | 1.5,1.6 |
| R5304 | T8322 | T8321 | punct | ", ",1.5 |
| R5305 | T8323 | T8324 | punct | ~,1.4 |
| R5306 | T8324 | T8321 | conj | 1.4,1.5 |
| R5307 | T8325 | T8324 | punct | ", ",1.4 |
| R5308 | T8326 | T8327 | punct | ~,1.35 |
| R5309 | T8327 | T8324 | conj | 1.35,1.4 |
| R5310 | T8328 | T8327 | punct | ", ",1.35 |
| R5311 | T8329 | T8327 | cc | and,1.35 |
| R5312 | T8330 | T8331 | punct | ~,1.3 |
| R5313 | T8331 | T8327 | conj | 1.3,1.35 |
| R5314 | T8332 | T8315 | punct | ", ",were |
| R5315 | T8333 | T8315 | advcl | representing,were |
| R5316 | T8334 | T8335 | amod | multiple,variants |
| R5317 | T8335 | T8333 | dobj | variants,representing |
| R5318 | T8336 | T8337 | compound | mutant,splice |
| R5319 | T8337 | T8335 | compound | splice,variants |
| R5320 | T8338 | T8315 | punct | .,were |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8180 | 10-12 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
| T8181 | 20-24 | PR_EXT:000005591 | denotes | Cln3 |
| T8182 | 25-29 | CHEBI_SO_EXT:mRNA | denotes | mRNA |
| T8183 | 33-42 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
| T8184 | 58-60 | UBERON:0002037 | denotes | Cb |
| T8185 | 60-64 | PR_EXT:000005591 | denotes | Cln3 |
| T8186 | 71-76 | CL_GO_EXT:cell | denotes | cells |
| T8187 | 77-81 | PR_EXT:000005591 | denotes | Cln3 |
| T8188 | 88-95 | SO:0001030 | denotes | forward |
| T8189 | 97-101 | SO_EXT:0000147 | denotes | Exon |
| T8190 | 105-112 | SO:0001031 | denotes | reverse |
| T8191 | 113-115 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
| T8192 | 116-128 | SO_EXT:0000006 | denotes | PCR products |
| T8193 | 151-160 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
| T8194 | 162-163 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
| T8195 | 164-165 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
| T8196 | 181-187 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
| T8197 | 204-209 | UBERON:0000955 | denotes | brain |
| T8198 | 214-218 | CL_GO_EXT:cell | denotes | cell |
| T8199 | 224-227 | CHEBI_SO_EXT:RNA | denotes | RNA |
| T8200 | 229-234 | UBERON:0000955 | denotes | Brain |
| T8201 | 239-243 | CL_GO_EXT:cell | denotes | cell |
| T8202 | 249-251 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
| T8203 | 252-273 | SO_EXT:0000006 | denotes | PCR reaction products |
| T8204 | 305-321 | CHEBI:4883 | denotes | ethidium-bromide |
| T8205 | 330-337 | CHEBI:2511 | denotes | agarose |
| T8206 | 344-353 | SO_EXT:wild_type_entity_or_quality | denotes | Wild-type |
| T8207 | 354-356 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
| T8208 | 357-368 | SO_EXT:0000006 | denotes | PCR product |
| T8209 | 388-389 | CHEBI_SO_EXT:base | denotes | b |
| T8210 | 399-405 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
| T8211 | 455-456 | CHEBI_SO_EXT:base | denotes | b |
| T8212 | 480-486 | SO_EXT:sequence_altered_entity_or_alteration_process | denotes | mutant |
| T8213 | 487-493 | GO:0008380 | denotes | splice |
| T8214 | 487-502 | SO_EXT:alternative_splice_variant | denotes | splice variants |