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PMC:539297 / 589-897 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T75 62-76 CL:0000540 denotes neuronal cells
T76 98-103 NCBITaxon:10088 denotes mouse
T77 104-113 UBERON:0002037 denotes cerebella
T78 154-156 UBERON:0002037 denotes Cb
T79 156-160 PR:000005591 denotes Cln3
T80 201-209 CL:0000540 denotes neuronal
T81 265-270 PR:000010124 denotes MAP-2
T82 275-279 PR:000006252 denotes NeuN
T83 290-296 CL:0000540 denotes neuron

craft-sa-dev

Id Subject Object Predicate Lexical cue
T273 0-308 sentence denotes To elucidate the consequences of the common JNCL mutation in neuronal cells, we used P4 knock-in mouse cerebella to establish conditionally immortalized CbCln3 wild-type, heterozygous, and homozygous neuronal precursor cell lines, which can be differentiated into MAP-2 and NeuN-positive, neuron-like cells.
T274 1-3 TO denotes To
T275 4-13 VB denotes elucidate
T276 81-85 VBD denotes used
T277 14-17 DT denotes the
T278 18-30 NNS denotes consequences
T279 31-33 IN denotes of
T280 34-37 DT denotes the
T281 50-58 NN denotes mutation
T282 38-44 JJ denotes common
T283 45-49 NN denotes JNCL
T284 59-61 IN denotes in
T285 62-70 JJ denotes neuronal
T286 71-76 NNS denotes cells
T287 76-78 , denotes ,
T288 78-80 PRP denotes we
T289 86-88 NN denotes P4
T290 104-113 NNS denotes cerebella
T291 89-94 VB denotes knock
T292 94-95 HYPH denotes -
T293 95-97 RP denotes in
T294 98-103 NN denotes mouse
T295 114-116 TO denotes to
T296 117-126 VB denotes establish
T297 127-140 RB denotes conditionally
T298 141-153 VBN denotes immortalized
T299 225-230 NNS denotes lines
T300 154-160 NN denotes CbCln3
T301 161-165 JJ denotes wild
T302 166-170 NN denotes type
T303 165-166 HYPH denotes -
T304 170-172 , denotes ,
T305 172-184 JJ denotes heterozygous
T306 184-186 , denotes ,
T307 186-189 CC denotes and
T308 190-200 JJ denotes homozygous
T309 201-209 JJ denotes neuronal
T310 210-219 NN denotes precursor
T311 220-224 NN denotes cell
T312 230-232 , denotes ,
T313 232-237 WDT denotes which
T314 245-259 VBN denotes differentiated
T315 238-241 MD denotes can
T316 242-244 VB denotes be
T317 260-264 IN denotes into
T318 265-268 NN denotes MAP
T319 280-288 JJ denotes positive
T320 268-269 HYPH denotes -
T321 269-270 CD denotes 2
T322 271-274 CC denotes and
T323 275-279 NN denotes NeuN
T324 279-280 HYPH denotes -
T325 302-307 NNS denotes cells
T326 288-290 , denotes ,
T327 290-296 NN denotes neuron
T328 297-301 JJ denotes like
T329 296-297 HYPH denotes -
T330 307-308 . denotes .
R92 T274 T275 aux To,elucidate
R93 T275 T276 advcl elucidate,used
R94 T277 T278 det the,consequences
R95 T278 T275 dobj consequences,elucidate
R96 T279 T278 prep of,consequences
R97 T280 T281 det the,mutation
R98 T281 T279 pobj mutation,of
R99 T282 T281 amod common,mutation
R100 T283 T281 compound JNCL,mutation
R101 T284 T278 prep in,consequences
R102 T285 T286 amod neuronal,cells
R103 T286 T284 pobj cells,in
R104 T287 T276 punct ", ",used
R105 T288 T276 nsubj we,used
R106 T289 T290 nmod P4,cerebella
R107 T290 T276 dobj cerebella,used
R108 T291 T290 amod knock,cerebella
R109 T292 T291 punct -,knock
R110 T293 T291 prt in,knock
R111 T294 T290 compound mouse,cerebella
R112 T295 T296 aux to,establish
R113 T296 T276 advcl establish,used
R114 T297 T298 advmod conditionally,immortalized
R115 T298 T299 amod immortalized,lines
R116 T299 T296 dobj lines,establish
R117 T300 T299 nmod CbCln3,lines
R118 T301 T302 amod wild,type
R119 T302 T299 nmod type,lines
R120 T303 T302 punct -,type
R121 T304 T302 punct ", ",type
R122 T305 T302 conj heterozygous,type
R123 T306 T305 punct ", ",heterozygous
R124 T307 T305 cc and,heterozygous
R125 T308 T305 conj homozygous,heterozygous
R126 T309 T310 amod neuronal,precursor
R127 T310 T299 compound precursor,lines
R128 T311 T299 compound cell,lines
R129 T312 T299 punct ", ",lines
R130 T313 T314 dep which,differentiated
R131 T314 T299 relcl differentiated,lines
R132 T315 T314 aux can,differentiated
R133 T316 T314 auxpass be,differentiated
R134 T317 T314 prep into,differentiated
R135 T318 T319 npadvmod MAP,positive
R136 T319 T325 amod positive,cells
R137 T320 T318 punct -,MAP
R138 T321 T318 nummod 2,MAP
R139 T322 T318 cc and,MAP
R140 T323 T318 conj NeuN,MAP
R141 T324 T319 punct -,positive
R142 T325 T317 pobj cells,into
R143 T326 T325 punct ", ",cells
R144 T327 T328 npadvmod neuron,like
R145 T328 T325 amod like,cells
R146 T329 T328 punct -,like
R147 T330 T276 punct .,used

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T126 50-58 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T127 62-76 CL:0000540 denotes neuronal cells
T128 71-76 CL_GO_EXT:cell denotes cells
T129 98-103 NCBITaxon:10088 denotes mouse
T130 104-113 UBERON:0002037 denotes cerebella
T131 154-156 UBERON:0002037 denotes Cb
T132 156-160 PR_EXT:000005591 denotes Cln3
T133 161-170 SO_EXT:wild_type_entity_or_quality denotes wild-type
T134 201-209 CL:0000540 denotes neuronal
T135 220-224 CL_GO_EXT:cell denotes cell
T136 245-259 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T137 265-270 PR_EXT:000010124 denotes MAP-2
T138 275-279 PR_EXT:000006252 denotes NeuN
T139 290-296 CL:0000540 denotes neuron
T140 302-307 CL_GO_EXT:cell denotes cells