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PMC:539297 / 5417-6143 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7898 10-18 CL:0000540 denotes Neuronal
T7899 26-36 GO:0010467 denotes expression
T7900 40-42 UBERON:0002037 denotes Cb
T7901 42-46 PR:000005591 denotes Cln3
T7902 76-78 UBERON:0002037 denotes Cb
T7903 78-82 PR:000005591 denotes Cln3
T7904 126-136 GO:0042571 denotes antibodies
T7905 147-149 UBERON:0002037 denotes Cb
T7906 149-153 PR:000005591 denotes Cln3
T7907 176-182 PR:000011141 denotes nestin
T7908 183-193 GO:0010467 denotes expression
T7909 206-210 PR:000007939 denotes GFAP
T7910 211-221 GO:0010467 denotes expression
T7911 245-253 CL:0000540 denotes neuronal
T7912 314-322 CHEBI:60004 denotes cocktail
T7913 338-340 UBERON:0002037 denotes Cb
T7914 340-344 PR:000005591 denotes Cln3
T7915 363-369 CL:0000540 denotes neuron
T7916 400-411 GO:0044297 denotes cell bodies
T7917 429-438 GO:0042995 denotes processes
T7918 444-448 PR:000010124 denotes MAP2
T7919 457-461 PR:000006252 denotes NeuN
T7920 466-476 GO:0010467 denotes expression
T7921 492-494 UBERON:0002037 denotes Cb
T7922 494-498 PR:000005591 denotes Cln3
T7923 529-544 CL:0000121 denotes Purkinje neuron
T7924 552-561 PR:000004967 denotes calbindin
T7925 567-569 UBERON:0002037 denotes Cb
T7926 569-573 PR:000005591 denotes Cln3
T7927 586-588 UBERON:0002037 denotes Cb
T7928 588-592 PR:000005591 denotes Cln3

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7982 10-18 JJ denotes Neuronal
T7983 19-25 NN denotes marker
T7984 26-36 NN denotes expression
T7985 140-145 VBN denotes shown
T7986 37-39 IN denotes in
T7987 40-46 NN denotes CbCln3
T7988 50-55 NNS denotes cells
T7989 46-47 SYM denotes +
T7990 47-48 HYPH denotes /
T7991 48-49 SYM denotes +
T7992 56-72 NN denotes Characterization
T7993 73-75 IN denotes of
T7994 76-82 NN denotes CbCln3
T7995 86-91 NNS denotes cells
T7996 82-83 SYM denotes +
T7997 83-84 HYPH denotes /
T7998 84-85 SYM denotes +
T7999 92-94 IN denotes by
T8000 95-113 NN denotes immunofluorescence
T8001 114-118 IN denotes with
T8002 119-125 NN denotes marker
T8003 126-136 NNS denotes antibodies
T8004 137-139 VBZ denotes is
T8005 145-146 . denotes .
T8006 146-273 sentence denotes CbCln3+/+ precursors exhibit nestin expression (a) but not GFAP expression (b), consistent with a neuronal precursor identity.
T8007 147-153 NN denotes CbCln3
T8008 157-167 NNS denotes precursors
T8009 153-154 SYM denotes +
T8010 154-155 HYPH denotes /
T8011 155-156 SYM denotes +
T8012 168-175 VBP denotes exhibit
T8013 176-182 NN denotes nestin
T8014 183-193 NN denotes expression
T8015 194-195 -LRB- denotes (
T8016 195-196 NN denotes a
T8017 196-197 -RRB- denotes )
T8018 198-201 CC denotes but
T8019 202-205 RB denotes not
T8020 206-210 NN denotes GFAP
T8021 211-221 NN denotes expression
T8022 222-223 -LRB- denotes (
T8023 223-224 NN denotes b
T8024 224-225 -RRB- denotes )
T8025 225-227 , denotes ,
T8026 227-237 JJ denotes consistent
T8027 238-242 IN denotes with
T8028 243-244 DT denotes a
T8029 264-272 NN denotes identity
T8030 245-253 JJ denotes neuronal
T8031 254-263 NN denotes precursor
T8032 272-273 . denotes .
T8033 273-491 sentence denotes Upon stimulation with a differentiation cocktail (see Methods), CbCln3+/+ cells achieved neuron-like morphology, with rounded cell bodies and extension of processes, and MAP2 (c) and NeuN (d) expression was increased.
T8034 274-278 IN denotes Upon
T8035 354-362 VBD denotes achieved
T8036 279-290 NN denotes stimulation
T8037 291-295 IN denotes with
T8038 296-297 DT denotes a
T8039 314-322 NN denotes cocktail
T8040 298-313 NN denotes differentiation
T8041 323-324 -LRB- denotes (
T8042 324-327 VB denotes see
T8043 328-335 NNS denotes Methods
T8044 335-336 -RRB- denotes )
T8045 336-338 , denotes ,
T8046 338-344 NN denotes CbCln3
T8047 348-353 NNS denotes cells
T8048 344-345 SYM denotes +
T8049 345-346 HYPH denotes /
T8050 346-347 SYM denotes +
T8051 363-369 NN denotes neuron
T8052 370-374 JJ denotes like
T8053 369-370 HYPH denotes -
T8054 375-385 NN denotes morphology
T8055 385-387 , denotes ,
T8056 387-391 IN denotes with
T8057 392-399 JJ denotes rounded
T8058 405-411 NNS denotes bodies
T8059 400-404 NN denotes cell
T8060 412-415 CC denotes and
T8061 416-425 NN denotes extension
T8062 426-428 IN denotes of
T8063 429-438 NNS denotes processes
T8064 438-440 , denotes ,
T8065 440-443 CC denotes and
T8066 444-448 NN denotes MAP2
T8067 466-476 NN denotes expression
T8068 449-450 -LRB- denotes (
T8069 450-451 NN denotes c
T8070 451-452 -RRB- denotes )
T8071 453-456 CC denotes and
T8072 457-461 NN denotes NeuN
T8073 462-463 -LRB- denotes (
T8074 463-464 NN denotes d
T8075 464-465 -RRB- denotes )
T8076 481-490 VBN denotes increased
T8077 477-480 VBD denotes was
T8078 490-491 . denotes .
T8079 491-566 sentence denotes CbCln3+/+ cells are negative for the Purkinje neuron marker calbindin (e).
T8080 492-498 NN denotes CbCln3
T8081 502-507 NNS denotes cells
T8082 498-499 SYM denotes +
T8083 499-500 HYPH denotes /
T8084 500-501 SYM denotes +
T8085 508-511 VBP denotes are
T8086 512-520 JJ denotes negative
T8087 521-524 IN denotes for
T8088 525-528 DT denotes the
T8089 545-551 NN denotes marker
T8090 529-537 NNP denotes Purkinje
T8091 538-544 NN denotes neuron
T8092 552-561 NN denotes calbindin
T8093 562-563 -LRB- denotes (
T8094 563-564 NN denotes e
T8095 564-565 -RRB- denotes )
T8096 565-566 . denotes .
T8097 566-671 sentence denotes CbCln3+/Δex7/8 and CbCln3Δex7/8/Δex7/8 cell lines exhibited identical marker immunofluorescence results.
T8098 567-573 NN denotes CbCln3
T8099 575-579 NN denotes Δex7
T8100 573-574 SYM denotes +
T8101 574-575 HYPH denotes /
T8102 611-616 NNS denotes lines
T8103 579-580 HYPH denotes /
T8104 580-581 CD denotes 8
T8105 582-585 CC denotes and
T8106 586-596 NN denotes CbCln3Δex7
T8107 599-603 NN denotes Δex7
T8108 596-597 HYPH denotes /
T8109 597-598 CD denotes 8
T8110 598-599 HYPH denotes /
T8111 603-604 HYPH denotes /
T8112 604-605 CD denotes 8
T8113 606-610 NN denotes cell
T8114 617-626 VBD denotes exhibited
T8115 627-636 JJ denotes identical
T8116 663-670 NNS denotes results
T8117 637-643 NN denotes marker
T8118 644-662 NN denotes immunofluorescence
T8119 670-671 . denotes .
T8120 671-726 sentence denotes a, b) 20 × magnification; c, d, e) 40 × magnification.
T8121 672-673 LS denotes a
T8122 683-696 NN denotes magnification
T8123 673-675 , denotes ,
T8124 675-676 LS denotes b
T8125 676-677 -RRB- denotes )
T8126 678-680 CD denotes 20
T8127 681-682 SYM denotes ×
T8128 696-697 : denotes ;
T8129 698-699 LS denotes c
T8130 712-725 NN denotes magnification
T8131 699-701 , denotes ,
T8132 701-702 LS denotes d
T8133 702-704 , denotes ,
T8134 704-705 LS denotes e
T8135 705-706 -RRB- denotes )
T8136 707-709 CD denotes 40
T8137 710-711 SYM denotes ×
T8138 725-726 . denotes .
R5063 T7990 T7987 punct /,CbCln3
R5064 T7991 T7987 punct +,CbCln3
R5065 T7992 T7985 nsubjpass Characterization,shown
R5066 T7993 T7992 prep of,Characterization
R5067 T7994 T7995 nmod CbCln3,cells
R5068 T7995 T7993 pobj cells,of
R5069 T7996 T7994 punct +,CbCln3
R5070 T7997 T7994 punct /,CbCln3
R5071 T7998 T7994 punct +,CbCln3
R5072 T7999 T7992 prep by,Characterization
R5073 T8000 T7999 pobj immunofluorescence,by
R5074 T8001 T8000 prep with,immunofluorescence
R5075 T8002 T8003 compound marker,antibodies
R5076 T8003 T8001 pobj antibodies,with
R5077 T8004 T7985 auxpass is,shown
R5078 T8005 T7985 punct .,shown
R5079 T8007 T8008 nmod CbCln3,precursors
R5080 T8008 T8012 nsubj precursors,exhibit
R5081 T8009 T8007 punct +,CbCln3
R5082 T8010 T8007 punct /,CbCln3
R5083 T8011 T8007 punct +,CbCln3
R5084 T8013 T8014 compound nestin,expression
R5085 T8014 T8012 dobj expression,exhibit
R5086 T8015 T8016 punct (,a
R5087 T8016 T8014 parataxis a,expression
R5088 T8017 T8016 punct ),a
R5089 T8018 T8014 cc but,expression
R5090 T8019 T8018 neg not,but
R5091 T8020 T8021 compound GFAP,expression
R5092 T8021 T8014 conj expression,expression
R5093 T8022 T8023 punct (,b
R5094 T8023 T8021 parataxis b,expression
R5095 T8024 T8023 punct ),b
R5096 T8025 T8012 punct ", ",exhibit
R5097 T8026 T8012 advcl consistent,exhibit
R5098 T8027 T8026 prep with,consistent
R5099 T8028 T8029 det a,identity
R5100 T8029 T8027 pobj identity,with
R5101 T8030 T8029 amod neuronal,identity
R5102 T8031 T8029 compound precursor,identity
R5103 T8032 T8012 punct .,exhibit
R5104 T8034 T8035 prep Upon,achieved
R5105 T8036 T8034 pobj stimulation,Upon
R5106 T8037 T8036 prep with,stimulation
R5107 T8038 T8039 det a,cocktail
R5108 T8039 T8037 pobj cocktail,with
R5109 T8040 T8039 compound differentiation,cocktail
R5110 T8041 T8042 punct (,see
R5111 T8042 T8036 parataxis see,stimulation
R5112 T8043 T8042 dobj Methods,see
R5113 T8044 T8042 punct ),see
R5114 T8045 T8035 punct ", ",achieved
R5115 T8046 T8047 nmod CbCln3,cells
R5117 T8048 T8046 punct +,CbCln3
R5120 T8051 T8052 npadvmod neuron,like
R5121 T8052 T8054 amod like,morphology
R5122 T8053 T8052 punct -,like
R5123 T8054 T8035 dobj morphology,achieved
R5124 T8055 T8035 punct ", ",achieved
R5125 T8056 T8035 prep with,achieved
R5126 T8057 T8058 amod rounded,bodies
R5127 T8058 T8056 pobj bodies,with
R5128 T8059 T8058 compound cell,bodies
R5129 T8060 T8058 cc and,bodies
R5130 T8061 T8058 conj extension,bodies
R5131 T8062 T8061 prep of,extension
R5132 T8063 T8062 pobj processes,of
R5133 T8064 T8035 punct ", ",achieved
R5134 T8065 T8035 cc and,achieved
R5135 T8066 T8067 nmod MAP2,expression
R5136 T8067 T8076 nsubjpass expression,increased
R5137 T8068 T8069 punct (,c
R5138 T8069 T8066 parataxis c,MAP2
R5139 T8070 T8069 punct ),c
R5140 T8071 T8066 cc and,MAP2
R5141 T8072 T8066 conj NeuN,MAP2
R5142 T8073 T8074 punct (,d
R5143 T8074 T8072 parataxis d,NeuN
R5144 T8075 T8074 punct ),d
R5145 T8076 T8035 conj increased,achieved
R5146 T8077 T8076 auxpass was,increased
R5147 T8078 T8076 punct .,increased
R5148 T8080 T8081 nmod CbCln3,cells
R5149 T8081 T8085 nsubj cells,are
R5150 T8082 T8080 punct +,CbCln3
R5151 T8083 T8080 punct /,CbCln3
R5152 T8084 T8080 punct +,CbCln3
R5153 T8086 T8085 acomp negative,are
R5154 T8087 T8086 prep for,negative
R5155 T8088 T8089 det the,marker
R5156 T8089 T8087 pobj marker,for
R5157 T8090 T8089 compound Purkinje,marker
R5158 T8091 T8089 compound neuron,marker
R5159 T8092 T8089 appos calbindin,marker
R5160 T8093 T8094 punct (,e
R5161 T8094 T8089 parataxis e,marker
R5162 T8095 T8094 punct ),e
R5163 T8096 T8085 punct .,are
R5164 T8098 T8099 nmod CbCln3,Δex7
R5165 T8099 T8102 nmod Δex7,lines
R5166 T8100 T8099 punct +,Δex7
R5167 T8101 T8099 punct /,Δex7
R5168 T8102 T8114 nsubj lines,exhibited
R5169 T8103 T8099 punct /,Δex7
R5170 T8104 T8099 nummod 8,Δex7
R5171 T8105 T8099 cc and,Δex7
R5172 T8106 T8107 nmod CbCln3Δex7,Δex7
R5173 T8107 T8099 conj Δex7,Δex7
R5174 T8108 T8107 punct /,Δex7
R5175 T8109 T8107 nummod 8,Δex7
R5176 T8110 T8107 punct /,Δex7
R5177 T8111 T8107 punct /,Δex7
R5178 T8112 T8107 nummod 8,Δex7
R5179 T8113 T8102 compound cell,lines
R5180 T8115 T8116 amod identical,results
R5181 T8116 T8114 dobj results,exhibited
R5182 T8117 T8118 compound marker,immunofluorescence
R5183 T8118 T8116 compound immunofluorescence,results
R5184 T8119 T8114 punct .,exhibited
R5185 T8121 T8122 meta a,magnification
R5186 T8123 T8121 punct ", ",a
R5187 T8124 T8121 dep b,a
R5188 T8125 T8121 punct ),a
R5189 T8126 T8122 nummod 20,magnification
R5190 T8127 T8126 punct ×,20
R5191 T8128 T8122 punct ;,magnification
R5195 T8132 T8129 dep d,c
R5196 T8133 T8129 punct ", ",c
R5197 T8134 T8129 dep e,c
R5198 T8135 T8129 punct ),c
R5199 T8136 T8130 nummod 40,magnification
R5200 T8137 T8136 punct ×,40
R5201 T8138 T8122 punct .,magnification
R5192 T8129 T8130 meta c,magnification
R5193 T8130 T8122 appos magnification,magnification
R5194 T8131 T8129 punct ", ",c
R5056 T7982 T7983 amod Neuronal,marker
R5057 T7983 T7984 compound marker,expression
R5058 T7984 T7985 dep expression,shown
R5059 T7986 T7984 prep in,expression
R5060 T7987 T7988 nmod CbCln3,cells
R5061 T7988 T7986 pobj cells,in
R5062 T7989 T7987 punct +,CbCln3
R5116 T8047 T8035 nsubj cells,achieved
R5118 T8049 T8046 punct /,CbCln3
R5119 T8050 T8046 punct +,CbCln3

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7929 10-18 CL:0000540 denotes Neuronal
T7930 19-25 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T7931 26-36 GO:0010467 denotes expression
T7932 40-42 UBERON:0002037 denotes Cb
T7933 42-46 PR_EXT:000005591 denotes Cln3
T7934 46-47 SO_EXT:normal_or_wild_type_or_present denotes +
T7935 48-49 SO_EXT:normal_or_wild_type_or_present denotes +
T7936 50-55 CL_GO_EXT:cell denotes cells
T7937 76-78 UBERON:0002037 denotes Cb
T7938 78-82 PR_EXT:000005591 denotes Cln3
T7939 82-83 SO_EXT:normal_or_wild_type_or_present denotes +
T7940 84-85 SO_EXT:normal_or_wild_type_or_present denotes +
T7941 86-91 CL_GO_EXT:cell denotes cells
T7942 119-125 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T7943 126-136 GO:0042571 denotes antibodies
T7944 147-149 UBERON:0002037 denotes Cb
T7945 149-153 PR_EXT:000005591 denotes Cln3
T7946 153-154 SO_EXT:normal_or_wild_type_or_present denotes +
T7947 155-156 SO_EXT:normal_or_wild_type_or_present denotes +
T7948 176-182 PR_EXT:000011141 denotes nestin
T7949 183-193 GO:0010467 denotes expression
T7950 206-210 PR_EXT:000007939 denotes GFAP
T7951 211-221 GO:0010467 denotes expression
T7952 245-253 CL:0000540 denotes neuronal
T7953 298-313 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T7954 314-322 CHEBI:60004 denotes cocktail
T7955 338-340 UBERON:0002037 denotes Cb
T7956 340-344 PR_EXT:000005591 denotes Cln3
T7957 344-345 SO_EXT:normal_or_wild_type_or_present denotes +
T7958 346-347 SO_EXT:normal_or_wild_type_or_present denotes +
T7959 348-353 CL_GO_EXT:cell denotes cells
T7960 363-369 CL:0000540 denotes neuron
T7961 400-404 CL_GO_EXT:cell denotes cell
T7962 400-411 GO:0044297 denotes cell bodies
T7963 429-438 GO:0042995 denotes processes
T7964 444-448 PR_EXT:000010124 denotes MAP2
T7965 457-461 PR_EXT:000006252 denotes NeuN
T7966 466-476 GO:0010467 denotes expression
T7967 492-494 UBERON:0002037 denotes Cb
T7968 494-498 PR_EXT:000005591 denotes Cln3
T7969 498-499 SO_EXT:normal_or_wild_type_or_present denotes +
T7970 500-501 SO_EXT:normal_or_wild_type_or_present denotes +
T7971 502-507 CL_GO_EXT:cell denotes cells
T7972 529-544 CL:0000121 denotes Purkinje neuron
T7973 545-551 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T7974 552-561 PR_EXT:000004967 denotes calbindin
T7975 567-569 UBERON:0002037 denotes Cb
T7976 569-573 PR_EXT:000005591 denotes Cln3
T7977 573-574 SO_EXT:normal_or_wild_type_or_present denotes +
T7978 586-588 UBERON:0002037 denotes Cb
T7979 588-592 PR_EXT:000005591 denotes Cln3
T7980 606-610 CL_GO_EXT:cell denotes cell
T7981 637-643 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker