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PMC:539297 / 454-1027 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T71 2-6 PR:000005591 denotes Cln3
T72 22-26 NCBITaxon:10088 denotes mice
T73 70-77 GO:0010467 denotes express
T74 85-93 PR:000005591 denotes battenin
T75 197-211 CL:0000540 denotes neuronal cells
T76 233-238 NCBITaxon:10088 denotes mouse
T77 239-248 UBERON:0002037 denotes cerebella
T78 289-291 UBERON:0002037 denotes Cb
T79 291-295 PR:000005591 denotes Cln3
T80 336-344 CL:0000540 denotes neuronal
T81 400-405 PR:000010124 denotes MAP-2
T82 410-414 PR:000006252 denotes NeuN
T83 425-431 CL:0000540 denotes neuron
T84 455-457 UBERON:0002037 denotes Cb
T85 457-461 PR:000005591 denotes Cln3
T86 484-491 GO:0010467 denotes express
T87 513-521 PR:000005591 denotes battenin

craft-sa-dev

Id Subject Object Predicate Lexical cue
T246 2-10 NN denotes Cln3Δex7
T247 22-26 NNS denotes mice
T248 10-11 HYPH denotes /
T249 11-12 CD denotes 8
T250 13-18 VB denotes knock
T251 18-19 HYPH denotes -
T252 19-21 RP denotes in
T253 26-28 , denotes ,
T254 28-33 WDT denotes which
T255 34-43 VBP denotes replicate
T256 44-47 DT denotes the
T257 60-68 NN denotes mutation
T258 48-54 JJ denotes common
T259 55-59 NN denotes JNCL
T260 68-70 , denotes ,
T261 70-77 VBP denotes express
T262 78-84 NN denotes mutant
T263 85-93 NN denotes battenin
T264 94-97 CC denotes and
T265 98-105 VBP denotes display
T266 106-110 NN denotes JNCL
T267 111-115 JJ denotes like
T268 110-111 HYPH denotes -
T269 116-125 NN denotes pathology
T270 125-126 . denotes .
T271 126-135 sentence denotes Results
T272 128-135 NNS denotes Results
T273 135-443 sentence denotes To elucidate the consequences of the common JNCL mutation in neuronal cells, we used P4 knock-in mouse cerebella to establish conditionally immortalized CbCln3 wild-type, heterozygous, and homozygous neuronal precursor cell lines, which can be differentiated into MAP-2 and NeuN-positive, neuron-like cells.
T274 136-138 TO denotes To
T275 139-148 VB denotes elucidate
T276 216-220 VBD denotes used
T277 149-152 DT denotes the
T278 153-165 NNS denotes consequences
T279 166-168 IN denotes of
T280 169-172 DT denotes the
T281 185-193 NN denotes mutation
T282 173-179 JJ denotes common
T283 180-184 NN denotes JNCL
T284 194-196 IN denotes in
T285 197-205 JJ denotes neuronal
T286 206-211 NNS denotes cells
T287 211-213 , denotes ,
T288 213-215 PRP denotes we
T289 221-223 NN denotes P4
T290 239-248 NNS denotes cerebella
T291 224-229 VB denotes knock
T292 229-230 HYPH denotes -
T293 230-232 RP denotes in
T294 233-238 NN denotes mouse
T295 249-251 TO denotes to
T296 252-261 VB denotes establish
T297 262-275 RB denotes conditionally
T298 276-288 VBN denotes immortalized
T299 360-365 NNS denotes lines
T300 289-295 NN denotes CbCln3
T301 296-300 JJ denotes wild
T302 301-305 NN denotes type
T303 300-301 HYPH denotes -
T304 305-307 , denotes ,
T305 307-319 JJ denotes heterozygous
T306 319-321 , denotes ,
T307 321-324 CC denotes and
T308 325-335 JJ denotes homozygous
T309 336-344 JJ denotes neuronal
T310 345-354 NN denotes precursor
T311 355-359 NN denotes cell
T312 365-367 , denotes ,
T313 367-372 WDT denotes which
T314 380-394 VBN denotes differentiated
T315 373-376 MD denotes can
T316 377-379 VB denotes be
T317 395-399 IN denotes into
T318 400-403 NN denotes MAP
T319 415-423 JJ denotes positive
T320 403-404 HYPH denotes -
T321 404-405 CD denotes 2
T322 406-409 CC denotes and
T323 410-414 NN denotes NeuN
T324 414-415 HYPH denotes -
T325 437-442 NNS denotes cells
T326 423-425 , denotes ,
T327 425-431 NN denotes neuron
T328 432-436 JJ denotes like
T329 431-432 HYPH denotes -
T330 442-443 . denotes .
T332 444-454 JJ denotes Homozygous
T333 478-483 NNS denotes cells
T334 455-465 NN denotes CbCln3Δex7
T335 465-466 HYPH denotes /
T336 466-467 CD denotes 8
T337 468-477 NN denotes precursor
T338 484-491 VBP denotes express
T339 492-495 JJ denotes low
T340 496-502 NNS denotes levels
T341 503-505 IN denotes of
T342 506-512 NN denotes mutant
T343 513-521 NN denotes battenin
T344 522-525 CC denotes and
T345 525-527 , denotes ,
T346 527-531 WRB denotes when
T347 532-536 VBN denotes aged
T348 552-562 VBP denotes accumulate
T349 537-539 IN denotes at
T350 540-550 NN denotes confluency
T351 550-552 , denotes ,
T352 563-569 NN denotes ATPase
R85 T264 T261 cc and,express
R86 T265 T261 conj display,express
R84 T263 T261 dobj battenin,express
R67 T246 T247 nmod Cln3Δex7,mice
R69 T248 T246 punct /,Cln3Δex7
R70 T249 T246 nummod 8,Cln3Δex7
R71 T250 T247 amod knock,mice
R72 T251 T250 punct -,knock
R73 T252 T250 prt in,knock
R74 T253 T247 punct ", ",mice
R75 T254 T255 dep which,replicate
R76 T255 T247 relcl replicate,mice
R77 T256 T257 det the,mutation
R78 T257 T255 dobj mutation,replicate
R79 T258 T257 amod common,mutation
R80 T259 T257 compound JNCL,mutation
R81 T260 T255 punct ", ",replicate
R82 T261 T255 conj express,replicate
R83 T262 T263 compound mutant,battenin
R87 T266 T267 npadvmod JNCL,like
R89 T268 T267 punct -,like
R90 T269 T265 dobj pathology,display
R92 T274 T275 aux To,elucidate
R93 T275 T276 advcl elucidate,used
R94 T277 T278 det the,consequences
R95 T278 T275 dobj consequences,elucidate
R96 T279 T278 prep of,consequences
R97 T280 T281 det the,mutation
R98 T281 T279 pobj mutation,of
R99 T282 T281 amod common,mutation
R100 T283 T281 compound JNCL,mutation
R101 T284 T278 prep in,consequences
R102 T285 T286 amod neuronal,cells
R103 T286 T284 pobj cells,in
R104 T287 T276 punct ", ",used
R105 T288 T276 nsubj we,used
R106 T289 T290 nmod P4,cerebella
R107 T290 T276 dobj cerebella,used
R108 T291 T290 amod knock,cerebella
R109 T292 T291 punct -,knock
R110 T293 T291 prt in,knock
R111 T294 T290 compound mouse,cerebella
R112 T295 T296 aux to,establish
R113 T296 T276 advcl establish,used
R114 T297 T298 advmod conditionally,immortalized
R115 T298 T299 amod immortalized,lines
R116 T299 T296 dobj lines,establish
R117 T300 T299 nmod CbCln3,lines
R118 T301 T302 amod wild,type
R119 T302 T299 nmod type,lines
R120 T303 T302 punct -,type
R121 T304 T302 punct ", ",type
R122 T305 T302 conj heterozygous,type
R123 T306 T305 punct ", ",heterozygous
R124 T307 T305 cc and,heterozygous
R125 T308 T305 conj homozygous,heterozygous
R126 T309 T310 amod neuronal,precursor
R127 T310 T299 compound precursor,lines
R128 T311 T299 compound cell,lines
R129 T312 T299 punct ", ",lines
R130 T313 T314 dep which,differentiated
R131 T314 T299 relcl differentiated,lines
R132 T315 T314 aux can,differentiated
R133 T316 T314 auxpass be,differentiated
R134 T317 T314 prep into,differentiated
R135 T318 T319 npadvmod MAP,positive
R136 T319 T325 amod positive,cells
R137 T320 T318 punct -,MAP
R138 T321 T318 nummod 2,MAP
R139 T322 T318 cc and,MAP
R140 T323 T318 conj NeuN,MAP
R141 T324 T319 punct -,positive
R142 T325 T317 pobj cells,into
R143 T326 T325 punct ", ",cells
R144 T327 T328 npadvmod neuron,like
R145 T328 T325 amod like,cells
R146 T329 T328 punct -,like
R147 T330 T276 punct .,used
R148 T332 T333 amod Homozygous,cells
R149 T333 T338 nsubj cells,express
R150 T334 T333 nmod CbCln3Δex7,cells
R151 T335 T334 punct /,CbCln3Δex7
R152 T336 T334 nummod 8,CbCln3Δex7
R153 T337 T333 compound precursor,cells
R154 T339 T340 amod low,levels
R155 T340 T338 dobj levels,express
R156 T341 T340 prep of,levels
R157 T342 T343 compound mutant,battenin
R158 T343 T341 pobj battenin,of
R159 T344 T338 cc and,express
R160 T345 T338 punct ", ",express
R161 T346 T347 advmod when,aged
R162 T347 T348 advcl aged,accumulate
R163 T348 T338 conj accumulate,express
R164 T349 T347 prep at,aged
R165 T350 T349 pobj confluency,at
R166 T351 T348 punct ", ",accumulate
R88 T267 T269 amod like,pathology

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T120 2-6 PR_EXT:000005591 denotes Cln3
T121 22-26 NCBITaxon:10088 denotes mice
T122 60-68 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T123 70-77 GO:0010467 denotes express
T124 78-84 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T125 85-93 PR_EXT:000005591 denotes battenin
T126 185-193 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T127 197-211 CL:0000540 denotes neuronal cells
T128 206-211 CL_GO_EXT:cell denotes cells
T129 233-238 NCBITaxon:10088 denotes mouse
T130 239-248 UBERON:0002037 denotes cerebella
T131 289-291 UBERON:0002037 denotes Cb
T132 291-295 PR_EXT:000005591 denotes Cln3
T133 296-305 SO_EXT:wild_type_entity_or_quality denotes wild-type
T134 336-344 CL:0000540 denotes neuronal
T135 355-359 CL_GO_EXT:cell denotes cell
T136 380-394 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T137 400-405 PR_EXT:000010124 denotes MAP-2
T138 410-414 PR_EXT:000006252 denotes NeuN
T139 425-431 CL:0000540 denotes neuron
T140 437-442 CL_GO_EXT:cell denotes cells
T141 455-457 UBERON:0002037 denotes Cb
T142 457-461 PR_EXT:000005591 denotes Cln3
T143 478-483 CL_GO_EXT:cell denotes cells
T144 484-491 GO:0010467 denotes express
T145 506-512 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T146 513-521 PR_EXT:000005591 denotes battenin
T147 532-536 GO_PATO_EXT:aging_or_agedness denotes aged
T148 563-569 GO_EXT:0016887 denotes ATPase