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PMC:539297 / 33687-34343 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7316 0-9 GO:0005764 denotes Lysosomal
T7317 23-39 GO:0006897 denotes endocytic uptake
T7318 128-133 GO:0040007 denotes grown
T7319 256-263 CHEBI:52071 denotes dextran
T7320 264-268 CHEBI:37926 denotes FITC
T7321 442-445 CHEBI:37958 denotes dye
T7322 476-488 CHEBI:16842 denotes formaldehyde

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7337 0-9 JJ denotes Lysosomal
T7338 10-18 NN denotes staining
T7339 19-22 CC denotes and
T7340 23-32 JJ denotes endocytic
T7341 33-39 NN denotes uptake
T7342 39-152 sentence denotes Cells were seeded at a density of 3–5 × 104 cells per well in 4-well chamber-slides and grown overnight at 33°C.
T7343 40-45 NNS denotes Cells
T7344 51-57 VBN denotes seeded
T7345 46-50 VBD denotes were
T7346 58-60 IN denotes at
T7347 61-62 DT denotes a
T7348 63-70 NN denotes density
T7349 71-73 IN denotes of
T7350 74-75 CD denotes 3
T7351 76-77 CD denotes 5
T7352 75-76 SYM denotes –
T7353 80-83 CD denotes 104
T7354 78-79 SYM denotes ×
T7355 84-89 NNS denotes cells
T7356 90-93 IN denotes per
T7357 94-98 NN denotes well
T7358 99-101 IN denotes in
T7359 102-103 CD denotes 4
T7360 104-108 NN denotes well
T7361 103-104 HYPH denotes -
T7362 117-123 NNS denotes slides
T7363 109-116 NN denotes chamber
T7364 116-117 HYPH denotes -
T7365 124-127 CC denotes and
T7366 128-133 VBN denotes grown
T7367 134-143 RB denotes overnight
T7368 144-146 IN denotes at
T7369 147-149 CD denotes 33
T7370 149-151 NN denotes °C
T7371 151-152 . denotes .
T7372 152-346 sentence denotes Growth media was exchanged for fresh, pre-warmed growth media containing 500 nM Lysotracker or 1 mg/ml dextran-FITC, and cells were incubated at 33°C for 45 minutes or 15 minutes, respectively.
T7373 153-159 NN denotes Growth
T7374 160-165 NNS denotes media
T7375 170-179 VBN denotes exchanged
T7376 166-169 VBD denotes was
T7377 180-183 IN denotes for
T7378 184-189 JJ denotes fresh
T7379 209-214 NNS denotes media
T7380 189-191 , denotes ,
T7381 191-201 VBN denotes pre-warmed
T7382 202-208 NN denotes growth
T7383 215-225 VBG denotes containing
T7384 226-229 CD denotes 500
T7385 230-232 NN denotes nM
T7386 233-244 NNP denotes Lysotracker
T7387 245-247 CC denotes or
T7388 248-249 CD denotes 1
T7389 250-252 NN denotes mg
T7390 264-268 NN denotes FITC
T7391 252-253 SYM denotes /
T7392 253-255 NN denotes ml
T7393 256-263 NN denotes dextran
T7394 263-264 HYPH denotes -
T7395 268-270 , denotes ,
T7396 270-273 CC denotes and
T7397 274-279 NNS denotes cells
T7398 285-294 VBN denotes incubated
T7399 280-284 VBD denotes were
T7400 295-297 IN denotes at
T7401 298-300 CD denotes 33
T7402 300-302 NN denotes °C
T7403 303-306 IN denotes for
T7404 307-309 CD denotes 45
T7405 310-317 NNS denotes minutes
T7406 318-320 CC denotes or
T7407 321-323 CD denotes 15
T7408 324-331 NNS denotes minutes
T7409 331-333 , denotes ,
T7410 333-345 RB denotes respectively
T7411 345-346 . denotes .
T7412 346-519 sentence denotes Following labeling, cells were immediately placed on ice and washed for 10 minutes in ice-cold dye-free media, and fixed with 4% formaldehyde in PBS, for 20 minutes on ice.
T7413 347-356 VBG denotes Following
T7414 390-396 VBN denotes placed
T7415 357-365 NN denotes labeling
T7416 365-367 , denotes ,
T7417 367-372 NNS denotes cells
T7418 373-377 VBD denotes were
T7419 378-389 RB denotes immediately
T7420 397-399 IN denotes on
T7421 400-403 NN denotes ice
T7422 404-407 CC denotes and
T7423 408-414 VBN denotes washed
T7424 415-418 IN denotes for
T7425 419-421 CD denotes 10
T7426 422-429 NNS denotes minutes
T7427 430-432 IN denotes in
T7428 433-436 NN denotes ice
T7429 437-441 JJ denotes cold
T7430 436-437 HYPH denotes -
T7431 451-456 NNS denotes media
T7432 442-445 NN denotes dye
T7433 446-450 JJ denotes free
T7434 445-446 HYPH denotes -
T7435 456-458 , denotes ,
T7436 458-461 CC denotes and
T7437 462-467 VBN denotes fixed
T7438 468-472 IN denotes with
T7439 473-474 CD denotes 4
T7440 474-475 NN denotes %
T7441 476-488 NN denotes formaldehyde
T7442 489-491 IN denotes in
T7443 492-495 NN denotes PBS
T7444 495-497 , denotes ,
T7445 497-500 IN denotes for
T7446 501-503 CD denotes 20
T7447 504-511 NNS denotes minutes
T7448 512-514 IN denotes on
T7449 515-518 NN denotes ice
T7450 518-519 . denotes .
T7451 519-656 sentence denotes Chambers were removed and slides were coverslipped with Vectashield mounting media for confocal microscopy analysis, as described above.
T7452 520-528 NNS denotes Chambers
T7453 534-541 VBN denotes removed
T7454 529-533 VBD denotes were
T7455 542-545 CC denotes and
T7456 546-552 NNS denotes slides
T7457 558-570 VBN denotes coverslipped
T7458 553-557 VBD denotes were
T7459 571-575 IN denotes with
T7460 576-587 NNP denotes Vectashield
T7461 597-602 NNS denotes media
T7462 588-596 NN denotes mounting
T7463 603-606 IN denotes for
T7464 607-615 JJ denotes confocal
T7465 616-626 NN denotes microscopy
T7466 627-635 NN denotes analysis
T7467 635-637 , denotes ,
T7468 637-639 IN denotes as
T7469 640-649 VBN denotes described
T7470 650-655 RB denotes above
T7471 655-656 . denotes .
R4625 T7337 T7338 amod Lysosomal,staining
R4626 T7339 T7338 cc and,staining
R4627 T7340 T7341 amod endocytic,uptake
R4628 T7341 T7338 conj uptake,staining
R4629 T7343 T7344 nsubjpass Cells,seeded
R4630 T7345 T7344 auxpass were,seeded
R4631 T7346 T7344 prep at,seeded
R4632 T7347 T7348 det a,density
R4633 T7348 T7346 pobj density,at
R4634 T7349 T7348 prep of,density
R4635 T7350 T7351 quantmod 3,5
R4636 T7351 T7353 quantmod 5,104
R4637 T7352 T7351 punct –,5
R4638 T7353 T7355 nummod 104,cells
R4639 T7354 T7353 punct ×,104
R4640 T7355 T7349 pobj cells,of
R4641 T7356 T7355 prep per,cells
R4642 T7357 T7356 pobj well,per
R4643 T7358 T7344 prep in,seeded
R4644 T7359 T7360 nummod 4,well
R4645 T7360 T7362 compound well,slides
R4646 T7361 T7360 punct -,well
R4647 T7362 T7358 pobj slides,in
R4648 T7363 T7362 compound chamber,slides
R4649 T7364 T7362 punct -,slides
R4650 T7365 T7344 cc and,seeded
R4651 T7366 T7344 conj grown,seeded
R4652 T7367 T7366 advmod overnight,grown
R4653 T7368 T7366 prep at,grown
R4654 T7369 T7370 nummod 33,°C
R4655 T7370 T7368 pobj °C,at
R4656 T7371 T7344 punct .,seeded
R4657 T7373 T7374 compound Growth,media
R4658 T7374 T7375 nsubjpass media,exchanged
R4659 T7376 T7375 auxpass was,exchanged
R4660 T7377 T7375 prep for,exchanged
R4661 T7378 T7379 amod fresh,media
R4662 T7379 T7377 pobj media,for
R4663 T7380 T7379 punct ", ",media
R4664 T7381 T7379 amod pre-warmed,media
R4665 T7382 T7379 compound growth,media
R4666 T7383 T7379 acl containing,media
R4667 T7384 T7385 nummod 500,nM
R4668 T7385 T7386 compound nM,Lysotracker
R4669 T7386 T7383 dobj Lysotracker,containing
R4670 T7387 T7386 cc or,Lysotracker
R4671 T7388 T7389 nummod 1,mg
R4672 T7389 T7390 nmod mg,FITC
R4673 T7390 T7386 conj FITC,Lysotracker
R4674 T7391 T7392 punct /,ml
R4675 T7392 T7389 prep ml,mg
R4676 T7393 T7390 compound dextran,FITC
R4677 T7394 T7390 punct -,FITC
R4678 T7395 T7375 punct ", ",exchanged
R4679 T7396 T7375 cc and,exchanged
R4680 T7397 T7398 nsubjpass cells,incubated
R4681 T7398 T7375 conj incubated,exchanged
R4682 T7399 T7398 auxpass were,incubated
R4683 T7400 T7398 prep at,incubated
R4684 T7401 T7402 nummod 33,°C
R4685 T7402 T7400 pobj °C,at
R4686 T7403 T7398 prep for,incubated
R4687 T7404 T7405 nummod 45,minutes
R4688 T7405 T7403 pobj minutes,for
R4689 T7406 T7405 cc or,minutes
R4690 T7407 T7408 nummod 15,minutes
R4691 T7408 T7405 conj minutes,minutes
R4692 T7409 T7398 punct ", ",incubated
R4693 T7410 T7398 advmod respectively,incubated
R4694 T7411 T7398 punct .,incubated
R4695 T7413 T7414 prep Following,placed
R4696 T7415 T7413 pobj labeling,Following
R4697 T7416 T7414 punct ", ",placed
R4698 T7417 T7414 nsubjpass cells,placed
R4699 T7418 T7414 auxpass were,placed
R4700 T7419 T7414 advmod immediately,placed
R4701 T7420 T7414 prep on,placed
R4702 T7421 T7420 pobj ice,on
R4703 T7422 T7414 cc and,placed
R4704 T7423 T7414 conj washed,placed
R4705 T7424 T7423 prep for,washed
R4706 T7425 T7426 nummod 10,minutes
R4707 T7426 T7424 pobj minutes,for
R4708 T7427 T7423 prep in,washed
R4709 T7428 T7429 npadvmod ice,cold
R4710 T7429 T7431 amod cold,media
R4711 T7430 T7429 punct -,cold
R4712 T7431 T7427 pobj media,in
R4713 T7432 T7433 npadvmod dye,free
R4714 T7433 T7431 amod free,media
R4715 T7434 T7433 punct -,free
R4716 T7435 T7423 punct ", ",washed
R4717 T7436 T7423 cc and,washed
R4718 T7437 T7423 conj fixed,washed
R4719 T7438 T7437 prep with,fixed
R4720 T7439 T7440 nummod 4,%
R4721 T7440 T7441 compound %,formaldehyde
R4722 T7441 T7438 pobj formaldehyde,with
R4723 T7442 T7441 prep in,formaldehyde
R4724 T7443 T7442 pobj PBS,in
R4725 T7444 T7437 punct ", ",fixed
R4726 T7445 T7437 prep for,fixed
R4727 T7446 T7447 nummod 20,minutes
R4728 T7447 T7445 pobj minutes,for
R4729 T7448 T7437 prep on,fixed
R4730 T7449 T7448 pobj ice,on
R4731 T7450 T7414 punct .,placed
R4732 T7452 T7453 nsubjpass Chambers,removed
R4733 T7454 T7453 auxpass were,removed
R4734 T7455 T7453 cc and,removed
R4735 T7456 T7457 nsubjpass slides,coverslipped
R4736 T7457 T7453 conj coverslipped,removed
R4737 T7458 T7457 auxpass were,coverslipped
R4738 T7459 T7457 prep with,coverslipped
R4739 T7460 T7461 compound Vectashield,media
R4740 T7461 T7459 pobj media,with
R4741 T7462 T7461 compound mounting,media
R4742 T7463 T7461 prep for,media
R4743 T7464 T7465 amod confocal,microscopy
R4744 T7465 T7466 compound microscopy,analysis
R4745 T7466 T7463 pobj analysis,for
R4746 T7467 T7457 punct ", ",coverslipped
R4747 T7468 T7469 mark as,described
R4748 T7469 T7457 advcl described,coverslipped
R4749 T7470 T7469 advmod above,described
R4750 T7471 T7457 punct .,coverslipped

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7323 0-9 GO:0005764 denotes Lysosomal
T7324 23-39 GO:0006897 denotes endocytic uptake
T7325 40-45 CL_GO_EXT:cell denotes Cells
T7326 84-89 CL_GO_EXT:cell denotes cells
T7327 128-133 GO:0040007 denotes grown
T7328 153-159 GO_EXT:biological_growth_entity_or_process denotes Growth
T7329 202-208 GO_EXT:biological_growth_entity_or_process denotes growth
T7330 256-263 CHEBI:52071 denotes dextran
T7331 264-268 CHEBI:37926 denotes FITC
T7332 274-279 CL_GO_EXT:cell denotes cells
T7333 357-365 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T7334 367-372 CL_GO_EXT:cell denotes cells
T7335 442-445 CHEBI_EXT:37958 denotes dye
T7336 476-488 CHEBI:16842 denotes formaldehyde