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PMC:539297 / 3037-3705 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T564 33-41 PR:000005591 denotes battenin
T565 78-89 SO:0000704 denotes genetically
T566 103-108 NCBITaxon:10088 denotes mouse
T567 116-120 PR:000005591 denotes Cln3
T568 136-140 NCBITaxon:10088 denotes mice
T569 183-190 GO:0010467 denotes express
T570 214-222 PR:000005591 denotes battenin
T571 223-230 SO:0001060 denotes isoform
T572 255-265 GO:0042571 denotes antibodies
T573 310-314 PR:000005591 denotes Cln3
T574 330-334 NCBITaxon:10088 denotes mice
T575 381-390 UBERON:0012101 denotes perinatal
T576 385-390 GO:0007567 denotes natal
T577 400-409 PR:000022190 denotes subunit c
T578 459-467 CL:0000540 denotes neuronal
T579 590-603 GO:0005739 denotes mitochondrial
T580 590-613 PR:000022190 denotes mitochondrial subunit c
T581 656-659 UBERON:0001017 denotes CNS
T582 656-667 CL:0000117 denotes CNS neurons

craft-sa-dev

Id Subject Object Predicate Lexical cue
T948 0-2 TO denotes To
T949 3-10 VB denotes explore
T950 66-75 VBD denotes generated
T951 11-15 NN denotes JNCL
T952 16-28 NN denotes pathogenesis
T953 29-32 CC denotes and
T954 33-41 NN denotes battenin
T955 42-50 NN denotes function
T956 50-52 , denotes ,
T957 52-54 PRP denotes we
T958 55-65 RB denotes previously
T959 76-77 DT denotes a
T960 109-114 NN denotes model
T961 78-89 RB denotes genetically
T962 90-97 JJ denotes precise
T963 98-102 NN denotes JNCL
T964 103-108 NN denotes mouse
T965 114-115 . denotes .
T966 115-298 sentence denotes Cln3Δex7/8 knock-in mice harbor the ~1 kb common JNCL mutation and express a non-truncated mutant battenin isoform that is detectable with antibodies recognizing C-terminal epitopes.
T967 116-124 NN denotes Cln3Δex7
T968 136-140 NNS denotes mice
T969 124-125 HYPH denotes /
T970 125-126 CD denotes 8
T971 127-132 VB denotes knock
T972 132-133 HYPH denotes -
T973 133-135 RP denotes in
T974 141-147 VBP denotes harbor
T975 148-151 DT denotes the
T976 170-178 NN denotes mutation
T977 152-153 SYM denotes ~
T978 153-154 CD denotes 1
T979 155-157 NN denotes kb
T980 158-164 JJ denotes common
T981 165-169 NN denotes JNCL
T982 179-182 CC denotes and
T983 183-190 VBP denotes express
T984 191-192 DT denotes a
T985 223-230 NN denotes isoform
T986 193-206 JJ denotes non-truncated
T987 207-213 NN denotes mutant
T988 214-222 NN denotes battenin
T989 231-235 WDT denotes that
T990 236-238 VBZ denotes is
T991 239-249 JJ denotes detectable
T992 250-254 IN denotes with
T993 255-265 NNS denotes antibodies
T994 266-277 VBG denotes recognizing
T995 278-279 NN denotes C
T996 280-288 JJ denotes terminal
T997 279-280 HYPH denotes -
T998 289-297 NNS denotes epitopes
T999 297-298 . denotes .
T1000 298-509 sentence denotes Homozygous Cln3Δex7/8 knock-in mice exhibit a progressive JNCL-like disease, with perinatal onset of subunit c deposition in many cell types and later onset of neuronal dysfunction and behavioral deficits [12].
T1001 299-309 JJ denotes Homozygous
T1002 330-334 NNS denotes mice
T1003 310-318 NN denotes Cln3Δex7
T1004 318-319 HYPH denotes /
T1005 319-320 CD denotes 8
T1006 321-326 VB denotes knock
T1007 326-327 HYPH denotes -
T1008 327-329 RP denotes in
T1009 335-342 VBP denotes exhibit
T1010 343-344 DT denotes a
T1011 367-374 NN denotes disease
T1012 345-356 JJ denotes progressive
T1013 357-361 NN denotes JNCL
T1014 362-366 JJ denotes like
T1015 361-362 HYPH denotes -
T1016 374-376 , denotes ,
T1017 376-380 IN denotes with
T1018 381-390 JJ denotes perinatal
T1019 391-396 NN denotes onset
T1020 397-399 IN denotes of
T1021 400-407 NN denotes subunit
T1022 408-409 NN denotes c
T1023 410-420 NN denotes deposition
T1024 421-423 IN denotes in
T1025 424-428 JJ denotes many
T1026 434-439 NNS denotes types
T1027 429-433 NN denotes cell
T1028 440-443 CC denotes and
T1029 444-449 JJ denotes later
T1030 450-455 NN denotes onset
T1031 456-458 IN denotes of
T1032 459-467 JJ denotes neuronal
T1033 468-479 NN denotes dysfunction
T1034 480-483 CC denotes and
T1035 484-494 JJ denotes behavioral
T1061 620-626 NN denotes manner
T1036 495-503 NNS denotes deficits
T1037 504-505 -LRB- denotes [
T1038 505-507 CD denotes 12
T1039 507-508 -RRB- denotes ]
T1040 508-509 . denotes .
T1041 509-668 sentence denotes These findings suggest that the major JNCL defect leads to abnormal turnover of mitochondrial subunit c, in a manner that selectively compromises CNS neurons.
T1042 510-515 DT denotes These
T1043 516-524 NNS denotes findings
T1044 525-532 VBP denotes suggest
T1045 533-537 IN denotes that
T1046 560-565 VBZ denotes leads
T1047 538-541 DT denotes the
T1048 553-559 NN denotes defect
T1049 542-547 JJ denotes major
T1050 548-552 NN denotes JNCL
T1051 566-568 IN denotes to
T1052 569-577 JJ denotes abnormal
T1053 578-586 NN denotes turnover
T1054 587-589 IN denotes of
T1055 590-603 JJ denotes mitochondrial
T1056 612-613 NN denotes c
T1057 604-611 NN denotes subunit
T1058 613-615 , denotes ,
T1059 615-617 IN denotes in
T1060 618-619 DT denotes a
T1062 627-631 WDT denotes that
T1063 644-655 VBZ denotes compromises
T1064 632-643 RB denotes selectively
T1065 656-659 NN denotes CNS
T1066 660-667 NNS denotes neurons
T1067 667-668 . denotes .
R504 T948 T949 aux To,explore
R505 T949 T950 advcl explore,generated
R506 T951 T952 compound JNCL,pathogenesis
R507 T952 T949 dobj pathogenesis,explore
R508 T953 T952 cc and,pathogenesis
R509 T954 T955 compound battenin,function
R510 T955 T952 conj function,pathogenesis
R511 T956 T950 punct ", ",generated
R512 T957 T950 nsubj we,generated
R513 T958 T950 advmod previously,generated
R514 T959 T960 det a,model
R516 T961 T962 advmod genetically,precise
R517 T962 T960 amod precise,model
R518 T963 T960 compound JNCL,model
R519 T964 T960 compound mouse,model
R520 T965 T950 punct .,generated
R521 T967 T968 nmod Cln3Δex7,mice
R522 T968 T974 nsubj mice,harbor
R523 T969 T967 punct /,Cln3Δex7
R524 T970 T967 nummod 8,Cln3Δex7
R525 T971 T968 amod knock,mice
R526 T972 T971 punct -,knock
R527 T973 T971 prt in,knock
R528 T975 T976 det the,mutation
R529 T976 T974 dobj mutation,harbor
R530 T977 T978 punct ~,1
R531 T978 T979 nummod 1,kb
R532 T979 T976 nmod kb,mutation
R533 T980 T976 amod common,mutation
R534 T981 T976 compound JNCL,mutation
R535 T982 T974 cc and,harbor
R536 T983 T974 conj express,harbor
R537 T984 T985 det a,isoform
R538 T985 T983 dobj isoform,express
R539 T986 T985 amod non-truncated,isoform
R540 T987 T988 compound mutant,battenin
R541 T988 T985 compound battenin,isoform
R542 T989 T990 dep that,is
R543 T990 T985 relcl is,isoform
R544 T991 T990 acomp detectable,is
R545 T992 T990 prep with,is
R546 T993 T992 pobj antibodies,with
R547 T994 T993 acl recognizing,antibodies
R548 T995 T996 npadvmod C,terminal
R549 T996 T998 amod terminal,epitopes
R550 T997 T996 punct -,terminal
R551 T998 T994 dobj epitopes,recognizing
R552 T999 T974 punct .,harbor
R553 T1001 T1002 amod Homozygous,mice
R554 T1002 T1009 nsubj mice,exhibit
R555 T1003 T1002 nmod Cln3Δex7,mice
R556 T1004 T1003 punct /,Cln3Δex7
R557 T1005 T1003 nummod 8,Cln3Δex7
R558 T1006 T1002 amod knock,mice
R559 T1007 T1006 punct -,knock
R560 T1008 T1006 prt in,knock
R561 T1010 T1011 det a,disease
R563 T1012 T1011 amod progressive,disease
R564 T1013 T1014 npadvmod JNCL,like
R565 T1014 T1011 amod like,disease
R566 T1015 T1014 punct -,like
R567 T1016 T1011 punct ", ",disease
R568 T1017 T1011 prep with,disease
R569 T1018 T1019 amod perinatal,onset
R570 T1019 T1017 pobj onset,with
R571 T1020 T1019 prep of,onset
R572 T1021 T1022 compound subunit,c
R573 T1022 T1023 compound c,deposition
R574 T1023 T1020 pobj deposition,of
R575 T1024 T1023 prep in,deposition
R576 T1025 T1026 amod many,types
R577 T1026 T1024 pobj types,in
R578 T1027 T1026 compound cell,types
R579 T1028 T1019 cc and,onset
R580 T1029 T1030 amod later,onset
R581 T1030 T1019 conj onset,onset
R582 T1031 T1030 prep of,onset
R583 T1032 T1033 amod neuronal,dysfunction
R584 T1033 T1031 pobj dysfunction,of
R585 T1034 T1033 cc and,dysfunction
R586 T1035 T1036 amod behavioral,deficits
R587 T1036 T1033 conj deficits,dysfunction
R588 T1037 T1038 punct [,12
R589 T1038 T1009 parataxis 12,exhibit
R590 T1039 T1038 punct ],12
R591 T1040 T1009 punct .,exhibit
R592 T1042 T1043 det These,findings
R593 T1043 T1044 nsubj findings,suggest
R594 T1045 T1046 mark that,leads
R596 T1047 T1048 det the,defect
R597 T1048 T1046 nsubj defect,leads
R598 T1049 T1048 amod major,defect
R599 T1050 T1048 compound JNCL,defect
R600 T1051 T1046 prep to,leads
R601 T1052 T1053 amod abnormal,turnover
R602 T1053 T1051 pobj turnover,to
R603 T1054 T1053 prep of,turnover
R604 T1055 T1056 amod mitochondrial,c
R605 T1056 T1054 pobj c,of
R606 T1057 T1056 compound subunit,c
R607 T1058 T1046 punct ", ",leads
R608 T1059 T1046 prep in,leads
R609 T1060 T1061 det a,manner
R610 T1061 T1059 pobj manner,in
R611 T1062 T1063 dep that,compromises
R612 T1063 T1061 relcl compromises,manner
R613 T1064 T1063 advmod selectively,compromises
R614 T1065 T1066 compound CNS,neurons
R615 T1066 T1063 dobj neurons,compromises
R616 T1067 T1044 punct .,suggest
R515 T960 T950 dobj model,generated
R562 T1011 T1009 dobj disease,exhibit
R595 T1046 T1044 ccomp leads,suggest

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T649 33-41 PR_EXT:000005591 denotes battenin
T650 78-89 SO_EXT:0000704 denotes genetically
T651 103-108 NCBITaxon:10088 denotes mouse
T652 116-120 PR_EXT:000005591 denotes Cln3
T653 136-140 NCBITaxon:10088 denotes mice
T654 156-157 CHEBI_SO_EXT:base denotes b
T655 170-178 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T656 183-190 GO:0010467 denotes express
T657 197-206 SO_EXT:sequence_truncation_process denotes truncated
T658 207-213 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T659 214-222 PR_EXT:000005591 denotes battenin
T660 223-230 SO_EXT:0001060 denotes isoform
T661 255-265 GO:0042571 denotes antibodies
T662 278-288 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T663 289-297 CHEBI_SO_EXT:epitope denotes epitopes
T664 310-314 PR_EXT:000005591 denotes Cln3
T665 330-334 NCBITaxon:10088 denotes mice
T666 381-390 UBERON:0012101 denotes perinatal
T667 385-390 GO:0007567 denotes natal
T668 400-409 PR_EXT:000022190 denotes subunit c
T669 429-433 CL_GO_EXT:cell denotes cell
T670 459-467 CL:0000540 denotes neuronal
T671 484-494 GO_PATO_EXT:biological_behavior denotes behavioral
T672 590-603 GO:0005739 denotes mitochondrial
T673 590-613 PR_EXT:000022190 denotes mitochondrial subunit c
T674 656-659 UBERON:0001017 denotes CNS
T675 656-667 CL:0000117 denotes CNS neurons

2_test

Id Subject Object Predicate Lexical cue
15588329-12374761-12950142 505-507 12374761 denotes 12