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PMC:539297 / 2641-3036 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T548 4-8 PR:000005591 denotes CLN3
T549 26-34 PR:000005591 denotes battenin
T550 48-52 PR:000005591 denotes CLN3
T551 56-62 PR:000005591 denotes cln3 p
T552 100-109 GO:0010467 denotes expressed
T553 122-130 GO:0016020 denotes membrane
T554 165-173 GO:0005764 denotes lysosome
T555 184-193 GO:0031982 denotes vesicular
T556 214-222 PR:000005591 denotes Battenin
T557 278-282 PR:Q9US09 denotes btn1
T558 294-298 PR:000005591 denotes CLN3
T559 299-307 SO:0000855 denotes ortholog
T560 325-333 PR:000005591 denotes battenin
T561 337-346 GO:0005764 denotes lysosomal
T562 347-361 GO:0006885 denotes pH homeostasis
T563 366-386 GO:0006865 denotes amino acid transport

craft-sa-dev

Id Subject Object Predicate Lexical cue
T868 0-3 DT denotes The
T869 17-24 NN denotes protein
T870 4-8 NN denotes CLN3
T871 9-16 VBN denotes encoded
T872 8-9 HYPH denotes -
T873 64-66 VBZ denotes is
T874 25-26 -LRB- denotes (
T875 26-34 NN denotes battenin
T876 34-36 , denotes ,
T877 36-40 RB denotes also
T878 41-47 VBN denotes called
T879 48-52 NN denotes CLN3
T880 53-55 CC denotes or
T881 56-60 NN denotes cln3
T882 61-62 NN denotes p
T883 62-63 -RRB- denotes )
T884 67-68 DT denotes a
T885 131-138 NN denotes protein
T886 69-75 RB denotes highly
T887 76-85 JJ denotes conserved
T888 85-87 , denotes ,
T889 87-99 RB denotes ubiquitously
T890 100-109 VBN denotes expressed
T891 109-111 , denotes ,
T892 111-121 NN denotes multi-pass
T893 122-130 NN denotes membrane
T894 139-140 -LRB- denotes [
T895 140-141 CD denotes 6
T896 141-142 -RRB- denotes ]
T897 143-147 WDT denotes that
T898 148-157 VBZ denotes localizes
T899 158-160 IN denotes to
T900 161-164 DT denotes the
T901 165-173 NN denotes lysosome
T902 174-177 CC denotes and
T903 178-183 JJ denotes other
T904 194-206 NNS denotes compartments
T905 184-193 JJ denotes vesicular
T906 207-208 -LRB- denotes [
T907 208-209 CD denotes 7
T908 209-210 SYM denotes -
T909 210-211 CD denotes 9
T910 211-212 -RRB- denotes ]
T911 212-213 . denotes .
T912 213-395 sentence denotes Battenin function remains to be elucidated, although studies of btn1, the yeast CLN3 ortholog, have implicated battenin in lysosomal pH homeostasis and amino acid transport [10,11].
T913 214-222 NN denotes Battenin
T914 223-231 NN denotes function
T915 232-239 VBZ denotes remains
T916 240-242 TO denotes to
T917 246-256 VBN denotes elucidated
T918 243-245 VB denotes be
T919 256-258 , denotes ,
T920 258-266 IN denotes although
T921 314-324 VBN denotes implicated
T922 267-274 NNS denotes studies
T923 275-277 IN denotes of
T924 278-282 NN denotes btn1
T925 282-284 , denotes ,
T926 284-287 DT denotes the
T927 299-307 NN denotes ortholog
T928 288-293 NN denotes yeast
T929 294-298 NN denotes CLN3
T930 307-309 , denotes ,
T931 309-313 VBP denotes have
T932 325-333 NN denotes battenin
T933 334-336 IN denotes in
T934 337-346 JJ denotes lysosomal
T935 350-361 NN denotes homeostasis
T936 347-349 NN denotes pH
T937 362-365 CC denotes and
T938 366-371 NN denotes amino
T939 372-376 NN denotes acid
T940 377-386 NN denotes transport
T941 387-388 -LRB- denotes [
T942 391-393 CD denotes 11
T943 388-390 CD denotes 10
T944 390-391 , denotes ,
T945 393-394 -RRB- denotes ]
T946 394-395 . denotes .
R428 T868 T869 det The,protein
R429 T869 T873 nsubj protein,is
R430 T870 T871 npadvmod CLN3,encoded
R431 T871 T869 amod encoded,protein
R432 T872 T871 punct -,encoded
R433 T874 T869 punct (,protein
R434 T875 T869 appos battenin,protein
R435 T876 T875 punct ", ",battenin
R436 T877 T878 advmod also,called
R437 T878 T875 acl called,battenin
R438 T879 T878 oprd CLN3,called
R439 T880 T879 cc or,CLN3
R440 T881 T882 compound cln3,p
R441 T882 T879 conj p,CLN3
R442 T883 T873 punct ),is
R443 T884 T885 det a,protein
R444 T885 T873 attr protein,is
R445 T886 T887 advmod highly,conserved
R446 T887 T885 amod conserved,protein
R447 T888 T885 punct ", ",protein
R448 T889 T890 advmod ubiquitously,expressed
R449 T890 T885 amod expressed,protein
R450 T891 T885 punct ", ",protein
R451 T892 T885 compound multi-pass,protein
R452 T893 T885 compound membrane,protein
R453 T894 T895 punct [,6
R454 T895 T885 parataxis 6,protein
R455 T896 T895 punct ],6
R456 T897 T898 dep that,localizes
R457 T898 T885 relcl localizes,protein
R458 T899 T898 prep to,localizes
R459 T900 T901 det the,lysosome
R460 T901 T899 pobj lysosome,to
R461 T902 T901 cc and,lysosome
R462 T903 T904 amod other,compartments
R463 T904 T901 conj compartments,lysosome
R464 T905 T904 amod vesicular,compartments
R465 T906 T907 punct [,7
R466 T907 T898 parataxis 7,localizes
R467 T908 T909 punct -,9
R468 T909 T907 prep 9,7
R469 T910 T907 punct ],7
R470 T911 T873 punct .,is
R471 T913 T914 compound Battenin,function
R472 T914 T915 nsubj function,remains
R473 T916 T917 aux to,elucidated
R474 T917 T915 xcomp elucidated,remains
R475 T918 T917 auxpass be,elucidated
R476 T919 T917 punct ", ",elucidated
R477 T920 T921 mark although,implicated
R478 T921 T917 advcl implicated,elucidated
R479 T922 T921 nsubj studies,implicated
R480 T923 T922 prep of,studies
R481 T924 T923 pobj btn1,of
R482 T925 T924 punct ", ",btn1
R483 T926 T927 det the,ortholog
R484 T927 T924 appos ortholog,btn1
R485 T928 T927 compound yeast,ortholog
R486 T929 T927 compound CLN3,ortholog
R487 T930 T921 punct ", ",implicated
R488 T931 T921 aux have,implicated
R489 T932 T921 dobj battenin,implicated
R490 T933 T921 prep in,implicated
R491 T934 T935 amod lysosomal,homeostasis
R492 T935 T933 pobj homeostasis,in
R493 T936 T935 compound pH,homeostasis
R494 T937 T935 cc and,homeostasis
R495 T938 T939 compound amino,acid
R496 T939 T940 compound acid,transport
R497 T940 T935 conj transport,homeostasis
R498 T941 T942 punct [,11
R499 T942 T921 parataxis 11,implicated
R500 T943 T942 nummod 10,11
R501 T944 T942 punct ",",11
R502 T945 T942 punct ],11
R503 T946 T915 punct .,remains

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T626 4-8 PR_EXT:000005591 denotes CLN3
T627 9-16 SO_EXT:sequence_coding_function denotes encoded
T628 17-24 CHEBI_PR_EXT:protein denotes protein
T629 26-34 PR_EXT:000005591 denotes battenin
T630 48-52 PR_EXT:000005591 denotes CLN3
T631 56-62 PR_EXT:000005591 denotes cln3 p
T632 76-85 SO_EXT:biological_conservation_process_or_quality denotes conserved
T633 100-109 GO:0010467 denotes expressed
T634 122-130 GO:0016020 denotes membrane
T635 131-138 CHEBI_PR_EXT:protein denotes protein
T636 148-157 GO_PATO_EXT:biological_localization_process_or_quality denotes localizes
T637 165-173 GO:0005764 denotes lysosome
T638 184-193 GO:0031982 denotes vesicular
T639 214-222 PR_EXT:000005591 denotes Battenin
T640 278-282 PR_EXT:Q9US09 denotes btn1
T641 288-293 NCBITaxon_EXT:yeast denotes yeast
T642 294-298 PR_EXT:000005591 denotes CLN3
T643 299-307 SO_EXT:0000855 denotes ortholog
T644 325-333 PR_EXT:000005591 denotes battenin
T645 337-346 GO:0005764 denotes lysosomal
T646 347-361 GO:0006885 denotes pH homeostasis
T647 366-376 CHEBI_SO_EXT:amino_acid denotes amino acid
T648 366-386 GO:0006865 denotes amino acid transport

2_test

Id Subject Object Predicate Lexical cue
15588329-12706816-12950138 140-141 12706816 denotes 6
15588329-14622109-12950139 208-209 14622109 denotes 7
15588329-11590129-12950139 208-209 11590129 denotes 7
15588329-14699076-12950139 208-209 14699076 denotes 7
15588329-10319861-12950140 388-390 10319861 denotes 10
15588329-14660799-12950141 391-393 14660799 denotes 11