PMC:539297 / 1927-2159
Annnotations
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T535 | 117-121 | SO:0000704 | denotes | gene |
| T536 | 140-145 | SO:0000147 | denotes | exons |
| T537 | 170-178 | SO:0000188 | denotes | intronic |
| T532 | 13-20 | SO:0000704 | denotes | genetic |
| T533 | 84-91 | SO:0001026 | denotes | genomic |
| T534 | 112-116 | PR:000005591 | denotes | CLN3 |
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T736 | 0-232 | sentence | denotes | The primary genetic defect (>80% disease chromosomes) leading to JNCL is a 1.02 kb genomic DNA deletion in the CLN3 gene, which eliminates exons 7 and 8 and surrounding intronic DNA, predicting a non-functional protein product [2]. |
| T737 | 1-4 | DT | denotes | The |
| T738 | 21-27 | NN | denotes | defect |
| T739 | 5-12 | JJ | denotes | primary |
| T740 | 13-20 | JJ | denotes | genetic |
| T741 | 71-73 | VBZ | denotes | is |
| T742 | 28-29 | -LRB- | denotes | ( |
| T743 | 42-53 | NNS | denotes | chromosomes |
| T744 | 29-30 | SYM | denotes | > |
| T745 | 30-32 | CD | denotes | 80 |
| T746 | 32-33 | NN | denotes | % |
| T747 | 34-41 | NN | denotes | disease |
| T748 | 53-54 | -RRB- | denotes | ) |
| T749 | 55-62 | VBG | denotes | leading |
| T750 | 63-65 | IN | denotes | to |
| T751 | 66-70 | NN | denotes | JNCL |
| T752 | 74-75 | DT | denotes | a |
| T753 | 96-104 | NN | denotes | deletion |
| T754 | 76-80 | CD | denotes | 1.02 |
| T755 | 81-83 | NN | denotes | kb |
| T756 | 84-91 | JJ | denotes | genomic |
| T757 | 92-95 | NN | denotes | DNA |
| T758 | 105-107 | IN | denotes | in |
| T759 | 108-111 | DT | denotes | the |
| T760 | 117-121 | NN | denotes | gene |
| T761 | 112-116 | NN | denotes | CLN3 |
| T762 | 121-123 | , | denotes | , |
| T763 | 123-128 | WDT | denotes | which |
| T764 | 129-139 | VBZ | denotes | eliminates |
| T765 | 140-145 | NNS | denotes | exons |
| T766 | 146-147 | CD | denotes | 7 |
| T767 | 148-151 | CC | denotes | and |
| T768 | 152-153 | CD | denotes | 8 |
| T769 | 154-157 | CC | denotes | and |
| T770 | 158-169 | JJ | denotes | surrounding |
| T771 | 179-182 | NN | denotes | DNA |
| T772 | 170-178 | JJ | denotes | intronic |
| T773 | 182-184 | , | denotes | , |
| T774 | 184-194 | VBG | denotes | predicting |
| T775 | 195-196 | DT | denotes | a |
| T776 | 220-227 | NN | denotes | product |
| T777 | 197-211 | JJ | denotes | non-functional |
| T778 | 212-219 | NN | denotes | protein |
| T779 | 228-229 | -LRB- | denotes | [ |
| T780 | 229-230 | CD | denotes | 2 |
| T781 | 230-231 | -RRB- | denotes | ] |
| T782 | 231-232 | . | denotes | . |
| R305 | T737 | T738 | det | The,defect |
| R306 | T738 | T741 | nsubj | defect,is |
| R307 | T739 | T738 | amod | primary,defect |
| R308 | T740 | T738 | amod | genetic,defect |
| R309 | T742 | T743 | punct | (,chromosomes |
| R311 | T744 | T745 | punct | >,80 |
| R312 | T745 | T746 | nummod | 80,% |
| R313 | T746 | T743 | compound | %,chromosomes |
| R314 | T747 | T743 | compound | disease,chromosomes |
| R315 | T748 | T743 | punct | ),chromosomes |
| R316 | T749 | T738 | acl | leading,defect |
| R317 | T750 | T749 | prep | to,leading |
| R318 | T751 | T750 | pobj | JNCL,to |
| R319 | T752 | T753 | det | a,deletion |
| R321 | T754 | T755 | nummod | 1.02,kb |
| R322 | T755 | T753 | nmod | kb,deletion |
| R323 | T756 | T753 | amod | genomic,deletion |
| R324 | T757 | T753 | compound | DNA,deletion |
| R325 | T758 | T753 | prep | in,deletion |
| R326 | T759 | T760 | det | the,gene |
| R327 | T760 | T758 | pobj | gene,in |
| R328 | T761 | T760 | compound | CLN3,gene |
| R329 | T762 | T753 | punct | ", ",deletion |
| R330 | T763 | T764 | dep | which,eliminates |
| R331 | T764 | T753 | relcl | eliminates,deletion |
| R332 | T765 | T766 | nmod | exons,7 |
| R333 | T766 | T764 | dobj | 7,eliminates |
| R334 | T767 | T766 | cc | and,7 |
| R335 | T768 | T766 | conj | 8,7 |
| R336 | T769 | T766 | cc | and,7 |
| R337 | T770 | T771 | amod | surrounding,DNA |
| R338 | T771 | T766 | conj | DNA,7 |
| R339 | T772 | T771 | amod | intronic,DNA |
| R340 | T773 | T741 | punct | ", ",is |
| R341 | T774 | T741 | advcl | predicting,is |
| R342 | T775 | T776 | det | a,product |
| R343 | T776 | T774 | dobj | product,predicting |
| R344 | T777 | T776 | amod | non-functional,product |
| R345 | T778 | T776 | compound | protein,product |
| R346 | T779 | T780 | punct | [,2 |
| R347 | T780 | T741 | parataxis | 2,is |
| R348 | T781 | T780 | punct | ],2 |
| R349 | T782 | T741 | punct | .,is |
| R310 | T743 | T738 | parataxis | chromosomes,defect |
| R320 | T753 | T741 | attr | deletion,is |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T602 | 13-20 | SO_EXT:0000704 | denotes | genetic |
| T603 | 42-53 | GO_SO_EXT:chromosome | denotes | chromosomes |
| T604 | 82-83 | CHEBI_SO_EXT:base | denotes | b |
| T605 | 84-95 | SO_EXT:genomic_DNA | denotes | genomic DNA |
| T606 | 92-95 | CHEBI_SO_EXT:DNA | denotes | DNA |
| T607 | 96-104 | SO_EXT:sequence_deletion_entity_or_process | denotes | deletion |
| T608 | 112-116 | PR_EXT:000005591 | denotes | CLN3 |
| T609 | 117-121 | SO_EXT:0000704 | denotes | gene |
| T610 | 140-145 | SO_EXT:0000147 | denotes | exons |
| T611 | 170-178 | SO_EXT:0000188 | denotes | intronic |
| T612 | 179-182 | CHEBI_SO_EXT:DNA | denotes | DNA |
| T613 | 212-219 | CHEBI_PR_EXT:protein | denotes | protein |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 15588329-7553855-12950136 | 229-230 | 7553855 | denotes | 2 |