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PMC:539297 / 15485-16940 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3136 707-714 GO:0005634 denotes nuclear
T3137 741-743 UBERON:0002037 denotes Cb
T3138 743-747 PR:000005591 denotes Cln3
T3128 291-302 GO:0005802 denotes trans-Golgi
T3129 395-412 CHEBI:16249 denotes protein disulfide
T3130 430-435 PR:000008131 denotes GM130
T3131 480-489 GO:0005764 denotes lysosomal
T3132 515-521 PR:000002061 denotes Lamp 2
T3133 569-571 UBERON:0002037 denotes Cb
T3134 571-575 PR:000005591 denotes Cln3
T3135 656-665 GO:0005764 denotes lysosomes
T3139 754-763 GO:0005764 denotes lysosomes
T3140 794-802 GO:0031982 denotes vesicles
T3141 845-854 GO:0005737 denotes cytoplasm
T3142 877-883 PR:000002060 denotes Lamp 1
T3143 954-960 PR:000002060 denotes Lamp 1
T3144 965-971 PR:000002061 denotes Lamp 2
T3145 1034-1036 UBERON:0002037 denotes Cb
T3146 1036-1040 PR:000005591 denotes Cln3
T3147 1133-1142 GO:0005764 denotes lysosomes
T3148 1247-1250 CHEBI:37958 denotes dye
T3149 1285-1291 CHEBI:37527 denotes acidic
T3150 1345-1354 GO:0005764 denotes lysosomal
T3151 1402-1411 GO:0005764 denotes lysosomal
T3120 41-52 PR:000006025 denotes cathepsin D
T3121 63-71 GO:0016020 denotes membrane
T3122 63-83 GO:0055085 denotes membrane trafficking
T3123 110-112 UBERON:0002037 denotes Cb
T3124 112-116 PR:000005591 denotes Cln3
T3125 200-219 GO:0043227 denotes membrane organelles
T3126 272-274 GO:0005783 denotes ER
T3127 276-285 GO:0005801 denotes cis-Golgi

craft-sa-dev

Id Subject Object Predicate Lexical cue
T3359 0-3 DT denotes The
T3360 13-22 NN denotes transport
T3361 4-12 JJ denotes abnormal
T3362 53-62 VBD denotes suggested
T3363 23-26 CC denotes and
T3364 27-37 NN denotes processing
T3365 38-40 IN denotes of
T3366 41-50 NN denotes cathepsin
T3367 51-52 NN denotes D
T3368 144-152 VBD denotes surveyed
T3369 63-71 NN denotes membrane
T3370 72-83 NN denotes trafficking
T3371 84-95 NNS denotes disruptions
T3372 96-98 IN denotes in
T3373 99-109 JJ denotes homozygous
T3374 123-128 NNS denotes cells
T3375 110-120 NN denotes CbCln3Δex7
T3376 120-121 HYPH denotes /
T3377 121-122 CD denotes 8
T3378 128-129 : denotes ;
T3379 130-139 RB denotes therefore
T3380 139-141 , denotes ,
T3381 141-143 PRP denotes we
T3382 153-156 DT denotes the
T3383 169-181 NN denotes distribution
T3384 157-168 JJ denotes subcellular
T3385 182-185 CC denotes and
T3386 186-196 NN denotes morphology
T3387 197-199 IN denotes of
T3388 200-208 NN denotes membrane
T3389 209-219 NNS denotes organelles
T3390 219-220 . denotes .
T3391 220-462 sentence denotes Components of the secretory pathway, including the ER, cis-Golgi, and trans-Golgi, did not appear altered from wild-type appearance when labeled with the respective markers, protein disulfide isomerase (PDI), GM130, and VVL (data not shown).
T3392 221-231 NNS denotes Components
T3393 312-318 VB denotes appear
T3394 232-234 IN denotes of
T3395 235-238 DT denotes the
T3396 249-256 NN denotes pathway
T3397 239-248 JJ denotes secretory
T3398 256-258 , denotes ,
T3465 580-581 CD denotes 8
T3399 258-267 VBG denotes including
T3400 268-271 DT denotes the
T3401 272-274 NN denotes ER
T3402 274-276 , denotes ,
T3403 276-279 NN denotes cis
T3404 280-285 NN denotes Golgi
T3405 279-280 HYPH denotes -
T3406 285-287 , denotes ,
T3407 287-290 CC denotes and
T3408 291-296 NN denotes trans
T3409 297-302 NN denotes Golgi
T3410 296-297 HYPH denotes -
T3411 302-304 , denotes ,
T3412 304-307 VBD denotes did
T3413 308-311 RB denotes not
T3414 319-326 JJ denotes altered
T3415 327-331 IN denotes from
T3416 332-336 JJ denotes wild
T3417 337-341 NN denotes type
T3418 336-337 HYPH denotes -
T3419 342-352 NN denotes appearance
T3420 353-357 WRB denotes when
T3421 358-365 VBN denotes labeled
T3422 366-370 IN denotes with
T3423 371-374 DT denotes the
T3424 386-393 NNS denotes markers
T3425 375-385 JJ denotes respective
T3426 393-395 , denotes ,
T3427 395-402 NN denotes protein
T3428 413-422 NN denotes isomerase
T3429 403-412 NN denotes disulfide
T3430 423-424 -LRB- denotes (
T3431 424-427 NN denotes PDI
T3432 427-428 -RRB- denotes )
T3433 428-430 , denotes ,
T3434 430-435 NN denotes GM130
T3435 435-437 , denotes ,
T3436 437-440 CC denotes and
T3437 441-444 NN denotes VVL
T3438 445-446 -LRB- denotes (
T3439 455-460 VBN denotes shown
T3440 446-450 NNS denotes data
T3441 451-454 RB denotes not
T3442 460-461 -RRB- denotes )
T3443 461-462 . denotes .
T3444 462-612 sentence denotes By contrast, the lysosomal markers, Lysotracker and Lamp 2 had significantly altered signal in homozygous CbCln3Δex7/8 cells, versus wild-type cells.
T3445 463-465 IN denotes By
T3446 522-525 VBD denotes had
T3447 466-474 NN denotes contrast
T3448 474-476 , denotes ,
T3449 476-479 DT denotes the
T3450 490-497 NNS denotes markers
T3451 480-489 JJ denotes lysosomal
T3452 497-499 , denotes ,
T3453 499-510 NN denotes Lysotracker
T3454 511-514 CC denotes and
T3455 515-519 NN denotes Lamp
T3456 520-521 CD denotes 2
T3457 526-539 RB denotes significantly
T3458 540-547 JJ denotes altered
T3459 548-554 NN denotes signal
T3460 555-557 IN denotes in
T3461 558-568 JJ denotes homozygous
T3462 582-587 NNS denotes cells
T3463 569-579 NN denotes CbCln3Δex7
T3464 579-580 HYPH denotes /
T3466 587-589 , denotes ,
T3467 589-595 CC denotes versus
T3468 596-600 JJ denotes wild
T3469 601-605 NN denotes type
T3470 600-601 HYPH denotes -
T3471 606-611 NNS denotes cells
T3472 611-612 . denotes .
T3473 612-876 sentence denotes Wild-type cells exhibited brightly stained lysosomes that were large and clustered in the perinuclear region whereas homozygous CbCln3Δex7/8 lysosomes were lightly stained, smaller vesicles that were more diffusely scattered in the cytoplasm of the cell (Fig. 6).
T3474 613-617 JJ denotes Wild
T3475 618-622 NN denotes type
T3476 617-618 HYPH denotes -
T3477 623-628 NNS denotes cells
T3478 629-638 VBD denotes exhibited
T3479 639-647 RB denotes brightly
T3480 648-655 VBN denotes stained
T3481 656-665 NNS denotes lysosomes
T3482 666-670 WDT denotes that
T3483 671-675 VBD denotes were
T3484 676-681 JJ denotes large
T3485 682-685 CC denotes and
T3486 686-695 JJ denotes clustered
T3487 696-698 IN denotes in
T3488 699-702 DT denotes the
T3489 715-721 NN denotes region
T3490 703-714 JJ denotes perinuclear
T3491 722-729 IN denotes whereas
T3492 764-768 VBD denotes were
T3493 730-740 JJ denotes homozygous
T3494 754-763 NNS denotes lysosomes
T3495 741-751 NN denotes CbCln3Δex7
T3496 751-752 HYPH denotes /
T3497 752-753 CD denotes 8
T3498 769-776 RB denotes lightly
T3499 777-784 VBN denotes stained
T3500 794-802 NNS denotes vesicles
T3501 784-786 , denotes ,
T3502 786-793 JJR denotes smaller
T3503 803-807 WDT denotes that
T3504 828-837 VBN denotes scattered
T3505 808-812 VBD denotes were
T3506 813-817 RBR denotes more
T3507 818-827 RB denotes diffusely
T3508 838-840 IN denotes in
T3509 841-844 DT denotes the
T3510 845-854 NN denotes cytoplasm
T3511 855-857 IN denotes of
T3512 858-861 DT denotes the
T3513 862-866 NN denotes cell
T3514 867-868 -LRB- denotes (
T3515 868-872 NN denotes Fig.
T3516 873-874 CD denotes 6
T3517 874-875 -RRB- denotes )
T3518 875-876 . denotes .
T3519 876-944 sentence denotes Lamp 1 distribution was also altered, as previously noted (Fig. 3).
T3520 877-881 NN denotes Lamp
T3521 884-896 NN denotes distribution
T3522 882-883 CD denotes 1
T3523 906-913 VBN denotes altered
T3524 897-900 VBD denotes was
T3525 901-905 RB denotes also
T3526 913-915 , denotes ,
T3527 915-917 IN denotes as
T3528 929-934 VBN denotes noted
T3533 942-943 -RRB- denotes )
T3534 943-944 . denotes .
T3535 944-1212 sentence denotes However, Lamp 1 and Lamp 2 total protein levels were similar in wild-type and homozygous CbCln3Δex7/8 cells by immunoblot analysis, indicating the altered signal likely reflects dispersed lysosomes or altered localization and/or epitope availability (data not shown).
T3536 945-952 RB denotes However
T3537 993-997 VBD denotes were
T3538 952-954 , denotes ,
T3539 954-958 NN denotes Lamp
T3540 986-992 NNS denotes levels
T3541 959-960 CD denotes 1
T3542 961-964 CC denotes and
T3543 965-969 NN denotes Lamp
T3544 970-971 CD denotes 2
T3545 972-977 JJ denotes total
T3546 978-985 NN denotes protein
T3547 998-1005 JJ denotes similar
T3548 1006-1008 IN denotes in
T3549 1009-1013 JJ denotes wild
T3550 1014-1018 NN denotes type
T3551 1013-1014 HYPH denotes -
T3552 1047-1052 NNS denotes cells
T3553 1019-1022 CC denotes and
T3554 1023-1033 JJ denotes homozygous
T3555 1034-1044 NN denotes CbCln3Δex7
T3556 1044-1045 HYPH denotes /
T3557 1045-1046 CD denotes 8
T3558 1053-1055 IN denotes by
T3559 1056-1066 NN denotes immunoblot
T3560 1067-1075 NN denotes analysis
T3561 1075-1077 , denotes ,
T3562 1077-1087 VBG denotes indicating
T3563 1088-1091 DT denotes the
T3564 1100-1106 NN denotes signal
T3565 1092-1099 JJ denotes altered
T3566 1114-1122 VBZ denotes reflects
T3567 1107-1113 RB denotes likely
T3568 1123-1132 JJ denotes dispersed
T3569 1133-1142 NNS denotes lysosomes
T3570 1143-1145 CC denotes or
T3571 1146-1153 JJ denotes altered
T3572 1154-1166 NN denotes localization
T3573 1167-1170 CC denotes and
T3574 1170-1171 HYPH denotes /
T3575 1171-1173 CC denotes or
T3576 1174-1181 NN denotes epitope
T3577 1182-1194 NN denotes availability
T3578 1195-1196 -LRB- denotes (
T3579 1205-1210 VBN denotes shown
T3580 1196-1200 NNS denotes data
T3581 1201-1204 RB denotes not
T3582 1210-1211 -RRB- denotes )
T3583 1211-1212 . denotes .
T3584 1212-1364 sentence denotes It is noteworthy that Lysotracker dye, which selectively accumulates in acidic compartments, exhibited the most marked reduction in lysosomal labeling.
T3585 1213-1215 PRP denotes It
T3586 1216-1218 VBZ denotes is
T3587 1219-1229 JJ denotes noteworthy
T3588 1230-1234 IN denotes that
T3589 1306-1315 VBD denotes exhibited
T3590 1235-1246 NN denotes Lysotracker
T3591 1247-1250 NN denotes dye
T3592 1250-1252 , denotes ,
T3593 1252-1257 WDT denotes which
T3594 1270-1281 VBZ denotes accumulates
T3595 1258-1269 RB denotes selectively
T3596 1282-1284 IN denotes in
T3597 1285-1291 JJ denotes acidic
T3598 1292-1304 NNS denotes compartments
T3599 1304-1306 , denotes ,
T3600 1316-1319 DT denotes the
T3601 1332-1341 NN denotes reduction
T3602 1320-1324 RBS denotes most
T3603 1325-1331 JJ denotes marked
T3604 1342-1344 IN denotes in
T3605 1345-1354 JJ denotes lysosomal
T3606 1355-1363 NN denotes labeling
T3607 1363-1364 . denotes .
T3608 1364-1455 sentence denotes This observation may reflect altered lysosomal pH, an established finding in JNCL [10,15].
T3609 1365-1369 DT denotes This
T3610 1370-1381 NN denotes observation
T3611 1386-1393 VB denotes reflect
T3612 1382-1385 MD denotes may
T3613 1394-1401 JJ denotes altered
T3614 1412-1414 NN denotes pH
T3615 1402-1411 JJ denotes lysosomal
T3616 1414-1416 , denotes ,
T3617 1416-1418 DT denotes an
T3618 1431-1438 NN denotes finding
T3619 1419-1430 JJ denotes established
T3620 1439-1441 IN denotes in
T3621 1442-1446 NN denotes JNCL
T3622 1447-1448 -LRB- denotes [
T3623 1451-1453 CD denotes 15
T3624 1448-1450 CD denotes 10
T3625 1450-1451 , denotes ,
T3626 1453-1454 -RRB- denotes ]
T3627 1454-1455 . denotes .
T3529 918-928 RB denotes previously
T3530 935-936 -LRB- denotes (
T3531 936-940 NN denotes Fig.
T3532 941-942 CD denotes 3
R1803 T3359 T3360 det The,transport
R1804 T3360 T3362 nsubj transport,suggested
R1805 T3361 T3360 amod abnormal,transport
R1806 T3362 T3368 ccomp suggested,surveyed
R1807 T3363 T3360 cc and,transport
R1808 T3364 T3360 conj processing,transport
R1809 T3365 T3360 prep of,transport
R1810 T3366 T3367 compound cathepsin,D
R1811 T3367 T3365 pobj D,of
R1812 T3369 T3370 compound membrane,trafficking
R1813 T3370 T3371 compound trafficking,disruptions
R1814 T3371 T3362 dobj disruptions,suggested
R1815 T3372 T3362 prep in,suggested
R1816 T3373 T3374 amod homozygous,cells
R1817 T3374 T3372 pobj cells,in
R1818 T3375 T3374 nmod CbCln3Δex7,cells
R1819 T3376 T3375 punct /,CbCln3Δex7
R1820 T3377 T3375 nummod 8,CbCln3Δex7
R1821 T3378 T3368 punct ;,surveyed
R1822 T3379 T3368 advmod therefore,surveyed
R1823 T3380 T3368 punct ", ",surveyed
R1824 T3381 T3368 nsubj we,surveyed
R1825 T3382 T3383 det the,distribution
R1826 T3383 T3368 dobj distribution,surveyed
R1827 T3384 T3383 amod subcellular,distribution
R1828 T3385 T3383 cc and,distribution
R1829 T3386 T3383 conj morphology,distribution
R1830 T3387 T3383 prep of,distribution
R1831 T3388 T3389 compound membrane,organelles
R1832 T3389 T3387 pobj organelles,of
R1833 T3390 T3368 punct .,surveyed
R1834 T3392 T3393 nsubj Components,appear
R1835 T3394 T3392 prep of,Components
R1836 T3395 T3396 det the,pathway
R1837 T3396 T3394 pobj pathway,of
R1838 T3397 T3396 amod secretory,pathway
R1839 T3398 T3392 punct ", ",Components
R1840 T3399 T3392 prep including,Components
R1841 T3400 T3401 det the,ER
R1842 T3401 T3399 pobj ER,including
R1843 T3402 T3401 punct ", ",ER
R1844 T3403 T3404 compound cis,Golgi
R1845 T3404 T3401 conj Golgi,ER
R1846 T3405 T3404 punct -,Golgi
R1847 T3406 T3404 punct ", ",Golgi
R1848 T3407 T3404 cc and,Golgi
R1849 T3408 T3409 compound trans,Golgi
R1850 T3409 T3404 conj Golgi,Golgi
R1851 T3410 T3409 punct -,Golgi
R1852 T3411 T3393 punct ", ",appear
R1853 T3412 T3393 aux did,appear
R1854 T3413 T3393 neg not,appear
R1855 T3414 T3393 oprd altered,appear
R1856 T3415 T3414 prep from,altered
R1857 T3416 T3417 amod wild,type
R1858 T3417 T3419 compound type,appearance
R1859 T3418 T3417 punct -,type
R1860 T3419 T3415 pobj appearance,from
R1861 T3420 T3421 advmod when,labeled
R1862 T3421 T3393 advcl labeled,appear
R1863 T3422 T3421 prep with,labeled
R1864 T3423 T3424 det the,markers
R1865 T3424 T3422 pobj markers,with
R1866 T3425 T3424 amod respective,markers
R1867 T3426 T3424 punct ", ",markers
R1868 T3427 T3428 compound protein,isomerase
R1869 T3428 T3424 appos isomerase,markers
R1870 T3429 T3428 compound disulfide,isomerase
R1871 T3430 T3428 punct (,isomerase
R1872 T3431 T3428 appos PDI,isomerase
R1873 T3432 T3428 punct ),isomerase
R1874 T3433 T3428 punct ", ",isomerase
R1875 T3434 T3428 conj GM130,isomerase
R1876 T3435 T3434 punct ", ",GM130
R1877 T3436 T3434 cc and,GM130
R1878 T3437 T3434 conj VVL,GM130
R1879 T3438 T3439 punct (,shown
R1880 T3439 T3393 parataxis shown,appear
R1881 T3440 T3439 nsubj data,shown
R1882 T3441 T3439 neg not,shown
R1883 T3442 T3439 punct ),shown
R1884 T3443 T3393 punct .,appear
R1885 T3445 T3446 prep By,had
R1886 T3447 T3445 pobj contrast,By
R1887 T3448 T3446 punct ", ",had
R1888 T3449 T3450 det the,markers
R1889 T3450 T3446 nsubj markers,had
R1890 T3451 T3450 amod lysosomal,markers
R1891 T3452 T3450 punct ", ",markers
R1892 T3453 T3450 appos Lysotracker,markers
R1893 T3454 T3453 cc and,Lysotracker
R1894 T3455 T3453 conj Lamp,Lysotracker
R1895 T3456 T3455 nummod 2,Lamp
R1896 T3457 T3458 advmod significantly,altered
R1897 T3458 T3459 amod altered,signal
R1898 T3459 T3446 dobj signal,had
R1899 T3460 T3446 prep in,had
R1900 T3461 T3462 amod homozygous,cells
R1901 T3462 T3460 pobj cells,in
R1902 T3463 T3462 nmod CbCln3Δex7,cells
R1903 T3464 T3463 punct /,CbCln3Δex7
R1904 T3465 T3463 nummod 8,CbCln3Δex7
R1905 T3466 T3462 punct ", ",cells
R1906 T3467 T3462 cc versus,cells
R1907 T3468 T3469 amod wild,type
R1908 T3469 T3471 compound type,cells
R1909 T3470 T3469 punct -,type
R1910 T3471 T3462 conj cells,cells
R1911 T3472 T3446 punct .,had
R1912 T3474 T3475 amod Wild,type
R1913 T3475 T3477 compound type,cells
R1914 T3476 T3475 punct -,type
R1915 T3477 T3478 nsubj cells,exhibited
R1916 T3479 T3480 advmod brightly,stained
R1917 T3480 T3481 amod stained,lysosomes
R1918 T3481 T3478 dobj lysosomes,exhibited
R1919 T3482 T3483 dep that,were
R1920 T3483 T3481 relcl were,lysosomes
R1921 T3484 T3483 acomp large,were
R1922 T3485 T3484 cc and,large
R1923 T3486 T3484 conj clustered,large
R1924 T3487 T3483 prep in,were
R1925 T3488 T3489 det the,region
R1926 T3489 T3487 pobj region,in
R1927 T3490 T3489 amod perinuclear,region
R1928 T3491 T3492 mark whereas,were
R1929 T3492 T3483 advcl were,were
R1930 T3493 T3494 amod homozygous,lysosomes
R1931 T3494 T3492 nsubj lysosomes,were
R1932 T3495 T3494 nmod CbCln3Δex7,lysosomes
R1933 T3496 T3495 punct /,CbCln3Δex7
R1934 T3497 T3495 nummod 8,CbCln3Δex7
R1935 T3498 T3499 advmod lightly,stained
R1936 T3499 T3500 amod stained,vesicles
R1937 T3500 T3492 attr vesicles,were
R1938 T3501 T3500 punct ", ",vesicles
R1939 T3502 T3500 amod smaller,vesicles
R1940 T3503 T3504 dep that,scattered
R1941 T3504 T3500 relcl scattered,vesicles
R1942 T3505 T3504 auxpass were,scattered
R1943 T3506 T3507 advmod more,diffusely
R1944 T3507 T3504 advmod diffusely,scattered
R1945 T3508 T3504 prep in,scattered
R1946 T3509 T3510 det the,cytoplasm
R1947 T3510 T3508 pobj cytoplasm,in
R1948 T3511 T3510 prep of,cytoplasm
R1949 T3512 T3513 det the,cell
R1950 T3513 T3511 pobj cell,of
R1951 T3514 T3515 punct (,Fig.
R1952 T3515 T3478 parataxis Fig.,exhibited
R1953 T3516 T3515 nummod 6,Fig.
R1954 T3517 T3515 punct ),Fig.
R1955 T3518 T3478 punct .,exhibited
R1956 T3520 T3521 nmod Lamp,distribution
R1957 T3521 T3523 nsubjpass distribution,altered
R1958 T3522 T3520 nummod 1,Lamp
R1959 T3524 T3523 auxpass was,altered
R1960 T3525 T3523 advmod also,altered
R1961 T3526 T3523 punct ", ",altered
R1962 T3527 T3528 mark as,noted
R1963 T3528 T3523 advcl noted,altered
R1964 T3529 T3528 advmod previously,noted
R1965 T3530 T3531 punct (,Fig.
R1966 T3531 T3523 parataxis Fig.,altered
R1967 T3532 T3531 nummod 3,Fig.
R1968 T3533 T3531 punct ),Fig.
R1969 T3534 T3523 punct .,altered
R1970 T3536 T3537 advmod However,were
R1971 T3538 T3537 punct ", ",were
R1972 T3539 T3540 nmod Lamp,levels
R1973 T3540 T3537 nsubj levels,were
R1974 T3541 T3539 nummod 1,Lamp
R1975 T3542 T3539 cc and,Lamp
R1976 T3543 T3539 conj Lamp,Lamp
R1977 T3544 T3543 nummod 2,Lamp
R1978 T3545 T3546 amod total,protein
R1979 T3546 T3540 compound protein,levels
R1980 T3547 T3537 acomp similar,were
R1981 T3548 T3537 prep in,were
R1982 T3549 T3550 amod wild,type
R1984 T3551 T3550 punct -,type
R1992 T3559 T3560 compound immunoblot,analysis
R1993 T3560 T3558 pobj analysis,by
R1994 T3561 T3537 punct ", ",were
R1995 T3562 T3537 advcl indicating,were
R1996 T3563 T3564 det the,signal
R1997 T3564 T3566 nsubj signal,reflects
R1998 T3565 T3564 amod altered,signal
R1999 T3566 T3562 advcl reflects,indicating
R2000 T3567 T3566 advmod likely,reflects
R2001 T3568 T3569 amod dispersed,lysosomes
R2002 T3569 T3566 dobj lysosomes,reflects
R2003 T3570 T3569 cc or,lysosomes
R2004 T3571 T3572 amod altered,localization
R2005 T3572 T3569 conj localization,lysosomes
R2006 T3573 T3572 cc and,localization
R2007 T3574 T3572 punct /,localization
R2008 T3575 T3572 cc or,localization
R2009 T3576 T3577 compound epitope,availability
R2010 T3577 T3572 conj availability,localization
R2011 T3578 T3579 punct (,shown
R2012 T3579 T3562 parataxis shown,indicating
R2013 T3580 T3579 nsubj data,shown
R2014 T3581 T3579 neg not,shown
R2015 T3582 T3579 punct ),shown
R2016 T3583 T3537 punct .,were
R2017 T3585 T3586 nsubj It,is
R2018 T3587 T3586 acomp noteworthy,is
R2019 T3588 T3589 mark that,exhibited
R2020 T3589 T3586 ccomp exhibited,is
R2021 T3590 T3591 compound Lysotracker,dye
R2022 T3591 T3589 nsubj dye,exhibited
R2023 T3592 T3591 punct ", ",dye
R2024 T3593 T3594 dep which,accumulates
R2025 T3594 T3591 relcl accumulates,dye
R2026 T3595 T3594 advmod selectively,accumulates
R2027 T3596 T3594 prep in,accumulates
R2028 T3597 T3598 amod acidic,compartments
R2029 T3598 T3596 pobj compartments,in
R2030 T3599 T3589 punct ", ",exhibited
R2031 T3600 T3601 det the,reduction
R2032 T3601 T3589 dobj reduction,exhibited
R2033 T3602 T3603 advmod most,marked
R2034 T3603 T3601 amod marked,reduction
R2035 T3604 T3601 prep in,reduction
R2036 T3605 T3606 amod lysosomal,labeling
R2037 T3606 T3604 pobj labeling,in
R2038 T3607 T3586 punct .,is
R2039 T3609 T3610 det This,observation
R2040 T3610 T3611 nsubj observation,reflect
R2041 T3612 T3611 aux may,reflect
R2042 T3613 T3614 amod altered,pH
R2043 T3614 T3611 dobj pH,reflect
R2044 T3615 T3614 amod lysosomal,pH
R2045 T3616 T3614 punct ", ",pH
R2046 T3617 T3618 det an,finding
R2047 T3618 T3614 appos finding,pH
R2048 T3619 T3618 amod established,finding
R2049 T3620 T3618 prep in,finding
R2050 T3621 T3620 pobj JNCL,in
R2051 T3622 T3623 punct [,15
R2052 T3623 T3611 parataxis 15,reflect
R2053 T3624 T3623 nummod 10,15
R2054 T3625 T3623 punct ",",15
R2055 T3626 T3623 punct ],15
R2056 T3627 T3611 punct .,reflect
R1983 T3550 T3552 nmod type,cells
R1985 T3552 T3548 pobj cells,in
R1986 T3553 T3550 cc and,type
R1987 T3554 T3550 conj homozygous,type
R1988 T3555 T3552 nmod CbCln3Δex7,cells
R1989 T3556 T3555 punct /,CbCln3Δex7
R1990 T3557 T3555 nummod 8,CbCln3Δex7
R1991 T3558 T3537 prep by,were

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3213 110-112 UBERON:0002037 denotes Cb
T3214 112-116 PR_EXT:000005591 denotes Cln3
T3215 123-128 CL_GO_EXT:cell denotes cells
T3216 157-168 GO_UBERON_EXT:cellular_component_or_cell_part denotes subcellular
T3217 160-168 CL_GO_EXT:cell denotes cellular
T3218 200-219 GO:0043227 denotes membrane organelles
T3219 239-256 GO_EXT:secretory_pathway denotes secretory pathway
T3220 272-274 GO:0005783 denotes ER
T3221 276-285 GO:0005801 denotes cis-Golgi
T3222 291-302 GO:0005802 denotes trans-Golgi
T3223 332-341 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3224 358-365 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T3225 386-393 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T3226 395-412 CHEBI:16249 denotes protein disulfide
T3227 395-422 GO_PR_EXT:protein_disulfide_isomerase denotes protein disulfide isomerase
T3228 424-427 GO_PR_EXT:protein_disulfide_isomerase denotes PDI
T3229 430-435 PR_EXT:000008131 denotes GM130
T3230 480-489 GO:0005764 denotes lysosomal
T3231 490-497 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T3232 515-521 PR_EXT:000002061 denotes Lamp 2
T3233 569-571 UBERON:0002037 denotes Cb
T3234 571-575 PR_EXT:000005591 denotes Cln3
T3235 582-587 CL_GO_EXT:cell denotes cells
T3236 596-605 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3237 606-611 CL_GO_EXT:cell denotes cells
T3238 613-622 SO_EXT:wild_type_entity_or_quality denotes Wild-type
T3239 623-628 CL_GO_EXT:cell denotes cells
T3240 656-665 GO:0005764 denotes lysosomes
T3241 707-714 GO:0005634 denotes nuclear
T3242 741-743 UBERON:0002037 denotes Cb
T3243 743-747 PR_EXT:000005591 denotes Cln3
T3244 754-763 GO:0005764 denotes lysosomes
T3245 794-802 GO:0031982 denotes vesicles
T3246 845-854 GO:0005737 denotes cytoplasm
T3247 862-866 CL_GO_EXT:cell denotes cell
T3248 877-883 PR_EXT:000002060 denotes Lamp 1
T3249 954-960 PR_EXT:000002060 denotes Lamp 1
T3250 965-971 PR_EXT:000002061 denotes Lamp 2
T3251 978-985 CHEBI_PR_EXT:protein denotes protein
T3252 1009-1018 SO_EXT:wild_type_entity_or_quality denotes wild-type
T3253 1034-1036 UBERON:0002037 denotes Cb
T3254 1036-1040 PR_EXT:000005591 denotes Cln3
T3255 1047-1052 CL_GO_EXT:cell denotes cells
T3256 1133-1142 GO:0005764 denotes lysosomes
T3257 1154-1166 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T3258 1174-1181 CHEBI_SO_EXT:epitope denotes epitope
T3259 1247-1250 CHEBI_EXT:37958 denotes dye
T3260 1285-1291 CHEBI_EXT:37527 denotes acidic
T3261 1345-1354 GO:0005764 denotes lysosomal
T3262 1355-1363 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T3263 1402-1411 GO:0005764 denotes lysosomal
T3211 63-71 GO:0016020 denotes membrane
T3212 63-83 GO:0055085 denotes membrane trafficking
T3208 13-22 GO_EXT:biological_routing_or_transport denotes transport
T3209 27-37 SO_EXT:sequence_alteration_process denotes processing
T3210 41-52 PR_EXT:000006025 denotes cathepsin D

2_test

Id Subject Object Predicate Lexical cue
15588329-10319861-12950146 1448-1450 10319861 denotes 10
15588329-11722572-12950147 1451-1453 11722572 denotes 15