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PMC:539297 / 14749-15419 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2410 4-5 PR:000006025 denotes i
T2411 32-37 PR:000006025 denotes sin D
T2412 155-164 PR:000022190 denotes subunit c
T2413 180-191 CHEBI:76219 denotes fluorogenic
T2414 208-219 PR:000006025 denotes cathepsin D
T2415 300-302 UBERON:0002037 denotes Cb
T2416 302-306 PR:000005591 denotes Cln3
T2417 509-520 PR:000006025 denotes cathepsin D
T2418 574-576 UBERON:0002037 denotes Cb
T2419 576-580 PR:000005591 denotes Cln3

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2889 111-120 JJ denotes enzymatic
T2890 139-142 IN denotes for
T2891 143-154 JJ denotes inefficient
T2892 165-173 NN denotes turnover
T2893 155-162 NN denotes subunit
T2894 163-164 NN denotes c
T2895 173-174 . denotes .
T2896 174-502 sentence denotes In a fluorogenic in vitro assay, cathepsin D activity in total cellular extracts was not significantly altered in homozygous CbCln3Δex7/8 cells (376 ± 89 RFU/μg total protein), versus wild-type cells (324 ± 58 RFU/μg total protein), although a consistent trend towards increased enzymatic activity in mutant cells was observed.
T2897 175-177 IN denotes In
T2898 278-285 VBN denotes altered
T2899 178-179 DT denotes a
T2900 201-206 NN denotes assay
T2901 180-191 JJ denotes fluorogenic
T2902 192-194 FW denotes in
T2903 195-200 FW denotes vitro
T2904 206-208 , denotes ,
T2905 208-217 NN denotes cathepsin
T2906 218-219 NN denotes D
T2907 220-228 NN denotes activity
T2908 229-231 IN denotes in
T2909 232-237 JJ denotes total
T2910 247-255 NNS denotes extracts
T2911 238-246 JJ denotes cellular
T2912 256-259 VBD denotes was
T2913 260-263 RB denotes not
T2914 264-277 RB denotes significantly
T2915 286-288 IN denotes in
T2916 289-299 JJ denotes homozygous
T2917 313-318 NNS denotes cells
T2918 300-310 NN denotes CbCln3Δex7
T2919 310-311 HYPH denotes /
T2920 311-312 CD denotes 8
T2921 319-320 -LRB- denotes (
T2922 329-332 NN denotes RFU
T2923 320-323 CD denotes 376
T2924 326-328 CD denotes 89
T2925 324-325 SYM denotes ±
T2926 332-333 SYM denotes /
T2927 342-349 NN denotes protein
T2928 333-335 NN denotes μg
T2929 336-341 JJ denotes total
T2930 349-350 -RRB- denotes )
T2931 350-352 , denotes ,
T2932 352-358 CC denotes versus
T2933 359-363 JJ denotes wild
T2934 364-368 NN denotes type
T2935 363-364 HYPH denotes -
T2936 369-374 NNS denotes cells
T2937 375-376 -LRB- denotes (
T2938 385-388 NN denotes RFU
T2939 376-379 CD denotes 324
T2940 382-384 CD denotes 58
T2941 380-381 IN denotes ±
T2942 388-389 SYM denotes /
T2943 398-405 NN denotes protein
T2944 389-391 NN denotes μg
T2945 392-397 JJ denotes total
T2946 405-406 -RRB- denotes )
T2947 406-408 , denotes ,
T2948 408-416 IN denotes although
T2949 493-501 VBN denotes observed
T2950 417-418 DT denotes a
T2951 430-435 NN denotes trend
T2952 419-429 JJ denotes consistent
T2953 436-443 IN denotes towards
T2954 444-453 VBN denotes increased
T2955 464-472 NN denotes activity
T2956 454-463 JJ denotes enzymatic
T2957 473-475 IN denotes in
T2958 476-482 NN denotes mutant
T2959 483-488 NNS denotes cells
T2960 489-492 VBD denotes was
T2961 501-502 . denotes .
T2962 502-670 sentence denotes Thus, cathepsin D transport and processing are disrupted in homozygous CbCln3Δex7/8 cells in a manner such that enzymatic activity appears to be relatively unaffected.
T2963 503-507 RB denotes Thus
T2964 550-559 VBN denotes disrupted
T2965 507-509 , denotes ,
T2966 509-518 NN denotes cathepsin
T2967 519-520 NN denotes D
T2968 521-530 NN denotes transport
T2969 531-534 CC denotes and
T2970 535-545 NN denotes processing
T2971 546-549 VBP denotes are
T2972 560-562 IN denotes in
T2973 563-573 JJ denotes homozygous
T2974 587-592 NNS denotes cells
T2975 574-584 NN denotes CbCln3Δex7
T2976 584-585 HYPH denotes /
T2977 585-586 CD denotes 8
T2978 593-595 IN denotes in
T2979 596-597 DT denotes a
T2980 598-604 NN denotes manner
T2981 605-609 JJ denotes such
T2982 610-614 IN denotes that
T2983 634-641 VBZ denotes appears
T2984 615-624 JJ denotes enzymatic
T2985 625-633 NN denotes activity
T2986 642-644 TO denotes to
T2987 645-647 VB denotes be
T2988 648-658 RB denotes relatively
T2989 659-669 JJ denotes unaffected
T2990 669-670 . denotes .
T2849 0-19 sentence denotes The impact of the a
T2850 0-3 DT denotes The
T2851 4-5 NN denotes i
T2852 5-6 JJ denotes m
T2853 6-7 NN denotes p
T2854 7-8 CC denotes a
T2855 8-9 JJ denotes c
T2856 9-10 NNS denotes t
T2857 10-11 , denotes
T2858 11-12 JJR denotes o
T2859 12-13 IN denotes f
T2860 14-15 JJ denotes t
T2861 15-16 NN denotes h
T2862 16-17 JJ denotes e
T2863 18-19 NN denotes a
T2864 19-31 sentence denotes ltered cathe
T2865 19-20 RB denotes l
T2866 23-25 VBD denotes ed
T2867 21-23 NNS denotes er
T2868 20-21 NN denotes t
T2869 26-27 VBN denotes c
T2870 27-28 CC denotes a
T2871 28-31 DT denotes the
T2872 31-174 sentence denotes psin D processing on enzymatic activity was next tested to determine if altered enzymatic activity accounts for inefficient subunit c turnover.
T2873 31-32 NN denotes p
T2874 80-86 VBN denotes tested
T2875 38-48 NN denotes processing
T2876 32-35 NN denotes sin
T2877 36-37 NN denotes D
T2878 49-51 IN denotes on
T2879 52-61 JJ denotes enzymatic
T2880 62-70 NN denotes activity
T2881 71-74 VBD denotes was
T2882 75-79 RB denotes next
T2883 87-89 TO denotes to
T2884 90-99 VB denotes determine
T2885 100-102 IN denotes if
T2886 130-138 VBZ denotes accounts
T2887 103-110 VBN denotes altered
T2888 121-129 NN denotes activity
R1700 T2892 T2890 pobj turnover,for
R1701 T2893 T2894 compound subunit,c
R1702 T2894 T2892 compound c,turnover
R1703 T2895 T2874 punct .,tested
R1704 T2897 T2898 prep In,altered
R1705 T2899 T2900 det a,assay
R1706 T2900 T2897 pobj assay,In
R1707 T2901 T2900 amod fluorogenic,assay
R1708 T2902 T2903 advmod in,vitro
R1709 T2903 T2900 amod vitro,assay
R1710 T2904 T2898 punct ", ",altered
R1711 T2905 T2906 compound cathepsin,D
R1712 T2906 T2907 compound D,activity
R1713 T2907 T2898 nsubjpass activity,altered
R1714 T2908 T2907 prep in,activity
R1715 T2909 T2910 amod total,extracts
R1716 T2910 T2908 pobj extracts,in
R1717 T2911 T2910 amod cellular,extracts
R1718 T2912 T2898 auxpass was,altered
R1719 T2913 T2898 neg not,altered
R1720 T2914 T2898 advmod significantly,altered
R1721 T2915 T2898 prep in,altered
R1722 T2916 T2917 amod homozygous,cells
R1723 T2917 T2915 pobj cells,in
R1724 T2918 T2917 nmod CbCln3Δex7,cells
R1725 T2919 T2918 punct /,CbCln3Δex7
R1726 T2920 T2918 nummod 8,CbCln3Δex7
R1727 T2921 T2922 punct (,RFU
R1728 T2922 T2917 parataxis RFU,cells
R1729 T2923 T2924 quantmod 376,89
R1730 T2924 T2922 nummod 89,RFU
R1731 T2925 T2924 punct ±,89
R1732 T2926 T2927 punct /,protein
R1733 T2927 T2922 prep protein,RFU
R1734 T2928 T2927 nmod μg,protein
R1735 T2929 T2927 amod total,protein
R1736 T2930 T2922 punct ),RFU
R1737 T2931 T2917 punct ", ",cells
R1738 T2932 T2917 cc versus,cells
R1739 T2933 T2934 amod wild,type
R1740 T2934 T2936 compound type,cells
R1741 T2935 T2934 punct -,type
R1742 T2936 T2917 conj cells,cells
R1743 T2937 T2938 punct (,RFU
R1744 T2938 T2936 parataxis RFU,cells
R1745 T2939 T2940 quantmod 324,58
R1746 T2940 T2938 nummod 58,RFU
R1747 T2941 T2940 quantmod ±,58
R1748 T2942 T2943 punct /,protein
R1749 T2943 T2938 prep protein,RFU
R1750 T2944 T2943 nmod μg,protein
R1751 T2945 T2943 amod total,protein
R1752 T2946 T2938 punct ),RFU
R1753 T2947 T2898 punct ", ",altered
R1754 T2948 T2949 mark although,observed
R1755 T2949 T2898 advcl observed,altered
R1756 T2950 T2951 det a,trend
R1757 T2951 T2949 nsubjpass trend,observed
R1758 T2952 T2951 amod consistent,trend
R1759 T2953 T2951 prep towards,trend
R1760 T2954 T2955 amod increased,activity
R1761 T2955 T2953 pobj activity,towards
R1762 T2956 T2955 amod enzymatic,activity
R1763 T2957 T2955 prep in,activity
R1764 T2958 T2959 compound mutant,cells
R1765 T2959 T2957 pobj cells,in
R1766 T2960 T2949 auxpass was,observed
R1767 T2961 T2898 punct .,altered
R1768 T2963 T2964 advmod Thus,disrupted
R1769 T2965 T2964 punct ", ",disrupted
R1770 T2966 T2967 compound cathepsin,D
R1771 T2967 T2964 nsubjpass D,disrupted
R1772 T2968 T2967 appos transport,D
R1773 T2969 T2968 cc and,transport
R1774 T2970 T2968 conj processing,transport
R1775 T2971 T2964 auxpass are,disrupted
R1776 T2972 T2964 prep in,disrupted
R1777 T2973 T2974 amod homozygous,cells
R1778 T2974 T2972 pobj cells,in
R1779 T2975 T2974 nmod CbCln3Δex7,cells
R1780 T2976 T2975 punct /,CbCln3Δex7
R1781 T2977 T2975 nummod 8,CbCln3Δex7
R1782 T2978 T2964 prep in,disrupted
R1783 T2979 T2980 det a,manner
R1784 T2980 T2978 pobj manner,in
R1785 T2981 T2980 amod such,manner
R1786 T2982 T2983 mark that,appears
R1787 T2983 T2981 ccomp appears,such
R1788 T2984 T2985 amod enzymatic,activity
R1789 T2985 T2983 nsubj activity,appears
R1790 T2986 T2987 aux to,be
R1791 T2987 T2983 xcomp be,appears
R1792 T2988 T2989 advmod relatively,unaffected
R1793 T2989 T2987 acomp unaffected,be
R1794 T2990 T2964 punct .,disrupted
R1687 T2879 T2880 amod enzymatic,activity
R1688 T2880 T2878 pobj activity,on
R1689 T2881 T2874 auxpass was,tested
R1690 T2882 T2874 advmod next,tested
R1691 T2883 T2884 aux to,determine
R1692 T2884 T2874 advcl determine,tested
R1693 T2885 T2886 mark if,accounts
R1694 T2886 T2884 ccomp accounts,determine
R1695 T2887 T2888 amod altered,activity
R1696 T2888 T2886 nsubj activity,accounts
R1697 T2889 T2888 amod enzymatic,activity
R1698 T2890 T2886 prep for,accounts
R1699 T2891 T2892 amod inefficient,turnover
R1678 T2855 T2856 amod c,t
R1679 T2862 T2863 amod e,a
R1680 T2865 T2866 advmod l,ed
R1681 T2867 T2866 nsubj er,ed
R1682 T2868 T2867 nmod t,er
R1683 T2873 T2874 nsubjpass p,tested
R1684 T2876 T2877 compound sin,D
R1685 T2877 T2875 compound D,processing
R1686 T2878 T2873 prep on,p

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2497 4-5 PR_EXT:000006025 denotes i
T2498 6-7 SO_EXT:wild_type_entity_or_quality denotes p
T2499 8-9 CL_GO_EXT:cell denotes c
T2500 20-21 SO_EXT:sequence_altered_entity_or_alteration_process denotes t
T2501 32-37 PR_EXT:000006025 denotes sin D
T2502 38-48 SO_EXT:sequence_alteration_process denotes processing
T2503 52-61 CHEBI_GO_SO_EXT:enzyme denotes enzymatic
T2504 111-120 CHEBI_GO_SO_EXT:enzyme denotes enzymatic
T2505 155-164 PR_EXT:000022190 denotes subunit c
T2506 180-191 CHEBI_EXT:76219 denotes fluorogenic
T2507 208-219 PR_EXT:000006025 denotes cathepsin D
T2508 238-246 CL_GO_EXT:cell denotes cellular
T2509 300-302 UBERON:0002037 denotes Cb
T2510 302-306 PR_EXT:000005591 denotes Cln3
T2511 313-318 CL_GO_EXT:cell denotes cells
T2512 342-349 CHEBI_PR_EXT:protein denotes protein
T2513 359-368 SO_EXT:wild_type_entity_or_quality denotes wild-type
T2514 369-374 CL_GO_EXT:cell denotes cells
T2515 398-405 CHEBI_PR_EXT:protein denotes protein
T2516 454-463 CHEBI_GO_SO_EXT:enzyme denotes enzymatic
T2517 476-482 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2518 483-488 CL_GO_EXT:cell denotes cells
T2519 509-520 PR_EXT:000006025 denotes cathepsin D
T2520 521-530 GO_EXT:biological_routing_or_transport denotes transport
T2521 535-545 SO_EXT:sequence_alteration_process denotes processing
T2522 574-576 UBERON:0002037 denotes Cb
T2523 576-580 PR_EXT:000005591 denotes Cln3
T2524 587-592 CL_GO_EXT:cell denotes cells
T2525 615-624 CHEBI_GO_SO_EXT:enzyme denotes enzymatic