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PMC:539061 / 59842-60855 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13008 21-34 CL:0000312 denotes keratinocytes
T13009 109-122 GO:0009294 denotes transfections
T13010 153-160 CHEBI:33893 denotes reagent
T13011 304-312 SO:0000167 denotes promoter
T13012 511-518 NCBITaxon:6134 denotes Runella
T13013 536-547 GO:0009294 denotes transfected
T13014 574-586 GO:0009294 denotes transfection
T13015 816-829 CL:0000312 denotes keratinocytes
T13016 835-840 UBERON:0001977 denotes serum
T13017 918-923 UBERON:0001977 denotes serum
T13018 958-964 PR:000000021 denotes noggin

2_test

Id Subject Object Predicate Lexical cue
15630473-12646922-84810335 95-96 12646922 denotes 4
15630473-12646922-84810336 1010-1011 12646922 denotes 4
T55664 95-96 12646922 denotes 4
T80769 1010-1011 12646922 denotes 4

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13019 0-4 CL_GO_EXT:cell denotes Cell
T13020 21-34 CL:0000312 denotes keratinocytes
T13021 55-62 CHEBI_EXT:calcium denotes calcium
T13022 109-122 GO:0009294 denotes transfections
T13023 153-160 CHEBI_EXT:33893 denotes reagent
T13024 264-279 GO_EXT:0004565 denotes β-galactosidase
T13025 283-293 GO_EXT:0045289 denotes luciferase
T13026 304-312 SO_EXT:0000167 denotes promoter
T13027 440-450 GO_EXT:0045289 denotes luciferase
T13028 511-518 NCBITaxon:6134 denotes Runella
T13029 511-529 GO_EXT:0050248 denotes Runella luciferase
T13030 536-547 GO:0009294 denotes transfected
T13031 553-558 CL_GO_EXT:cell denotes cells
T13032 574-586 GO:0009294 denotes transfection
T13033 791-806 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T13034 810-814 GO_PR_EXT:MAP_kinase denotes MAPK
T13035 816-829 CL:0000312 denotes keratinocytes
T13036 835-840 UBERON:0001977 denotes serum
T13037 880-885 CL_GO_EXT:cell denotes cells
T13038 918-923 UBERON:0001977 denotes serum
T13039 938-943 CL_GO_EXT:cell denotes cells
T13040 958-964 PR_EXT:000000021 denotes noggin

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13041 0-4 NN denotes Cell
T13042 5-12 NN denotes culture
T13043 12-98 sentence denotes Primary keratinocytes were culture in low-calcium medium as previously described [4].
T13044 13-20 JJ denotes Primary
T13045 21-34 NNS denotes keratinocytes
T13046 40-47 VBN denotes culture
T13047 35-39 VBD denotes were
T13048 48-50 IN denotes in
T13049 51-54 JJ denotes low
T13050 55-62 NN denotes calcium
T13051 54-55 HYPH denotes -
T13052 63-69 NN denotes medium
T13053 70-72 IN denotes as
T13054 84-93 VBN denotes described
T13055 73-83 RB denotes previously
T13056 94-95 -LRB- denotes [
T13057 95-96 CD denotes 4
T13058 96-97 -RRB- denotes ]
T13059 97-98 . denotes .
T13060 98-248 sentence denotes Transient transfections were carried out with FuGENE6 reagent (Roche, Indianapolis, Indiana, United States) according to the manufacturer's protocol.
T13061 99-108 JJ denotes Transient
T13062 109-122 NNS denotes transfections
T13063 128-135 VBN denotes carried
T13064 123-127 VBD denotes were
T13065 136-139 RP denotes out
T13066 140-144 IN denotes with
T13067 145-152 NN denotes FuGENE6
T13068 153-160 NN denotes reagent
T13069 161-162 -LRB- denotes (
T13070 162-167 NNP denotes Roche
T13071 167-169 , denotes ,
T13072 169-181 NNP denotes Indianapolis
T13073 181-183 , denotes ,
T13074 183-190 NNP denotes Indiana
T13075 190-192 , denotes ,
T13076 192-198 NNP denotes United
T13077 199-205 NNP denotes States
T13078 205-206 -RRB- denotes )
T13079 207-216 VBG denotes according
T13080 217-219 IN denotes to
T13081 220-223 DT denotes the
T13082 224-236 NN denotes manufacturer
T13083 239-247 NN denotes protocol
T13084 236-238 POS denotes 's
T13085 247-248 . denotes .
T13086 248-510 sentence denotes Measurement of β-galactosidase or luciferase levels in promoter activity studies were carried out with the Galacto-Lite assay kit (TROPIX, Bedford, Massachusetts, United States) and the Dual luciferase (Promega, Madison, Wisconsin, United States), respectively.
T13087 249-260 NN denotes Measurement
T13088 335-342 VBN denotes carried
T13089 261-263 IN denotes of
T13090 264-265 NN denotes β
T13091 266-279 NN denotes galactosidase
T13092 265-266 HYPH denotes -
T13093 294-300 NNS denotes levels
T13094 280-282 CC denotes or
T13095 283-293 NN denotes luciferase
T13096 301-303 IN denotes in
T13097 304-312 NN denotes promoter
T13098 313-321 NN denotes activity
T13099 322-329 NNS denotes studies
T13100 330-334 VBD denotes were
T13101 343-346 RP denotes out
T13102 347-351 IN denotes with
T13103 352-355 DT denotes the
T13104 375-378 NN denotes kit
T13105 356-363 NNP denotes Galacto
T13106 364-368 NNP denotes Lite
T13107 363-364 HYPH denotes -
T13108 369-374 NN denotes assay
T13109 379-380 -LRB- denotes (
T13110 380-386 NNP denotes TROPIX
T13111 386-388 , denotes ,
T13112 388-395 NNP denotes Bedford
T13113 395-397 , denotes ,
T13114 397-410 NNP denotes Massachusetts
T13115 410-412 , denotes ,
T13116 412-418 NNP denotes United
T13117 419-425 NNP denotes States
T13118 425-426 -RRB- denotes )
T13119 427-430 CC denotes and
T13120 431-434 DT denotes the
T13121 440-450 NN denotes luciferase
T13122 435-439 JJ denotes Dual
T13123 451-452 -LRB- denotes (
T13124 452-459 NNP denotes Promega
T13125 459-461 , denotes ,
T13126 461-468 NNP denotes Madison
T13127 468-470 , denotes ,
T13128 470-479 NNP denotes Wisconsin
T13129 479-481 , denotes ,
T13130 481-487 NNP denotes United
T13131 488-494 NNP denotes States
T13132 494-495 -RRB- denotes )
T13133 495-497 , denotes ,
T13134 497-509 RB denotes respectively
T13135 509-510 . denotes .
T13136 510-598 sentence denotes Runella luciferase was cotransfected into cells to correct for transfection efficiency.
T13137 511-518 NN denotes Runella
T13138 519-529 NN denotes luciferase
T13139 534-547 VBN denotes cotransfected
T13140 530-533 VBD denotes was
T13141 548-552 IN denotes into
T13142 553-558 NNS denotes cells
T13143 559-561 TO denotes to
T13144 562-569 VB denotes correct
T13145 570-573 IN denotes for
T13146 574-586 NN denotes transfection
T13147 587-597 NN denotes efficiency
T13148 597-598 . denotes .
T13149 598-669 sentence denotes Experiments were done in triplicate and repeated at least three times.
T13150 599-610 NNS denotes Experiments
T13151 616-620 VBN denotes done
T13152 611-615 VBD denotes were
T13153 621-623 IN denotes in
T13154 624-634 NN denotes triplicate
T13155 635-638 CC denotes and
T13156 639-647 VBN denotes repeated
T13157 648-650 RB denotes at
T13158 657-662 CD denotes three
T13159 651-656 RBS denotes least
T13160 663-668 NNS denotes times
T13161 668-669 . denotes .
T13162 669-764 sentence denotes Measurements were done on a luminometer (MGM Instruments, Hamden, Connecticut, United States).
T13163 670-682 NNS denotes Measurements
T13164 688-692 VBN denotes done
T13165 683-687 VBD denotes were
T13166 693-695 IN denotes on
T13167 696-697 DT denotes a
T13168 698-709 NN denotes luminometer
T13169 710-711 -LRB- denotes (
T13170 715-726 NNP denotes Instruments
T13171 711-714 NNP denotes MGM
T13172 726-728 , denotes ,
T13173 728-734 NNP denotes Hamden
T13174 734-736 , denotes ,
T13175 736-747 NNP denotes Connecticut
T13176 747-749 , denotes ,
T13177 749-755 NNP denotes United
T13178 756-762 NNP denotes States
T13179 762-763 -RRB- denotes )
T13180 763-764 . denotes .
T13181 764-924 sentence denotes For experiments measuring phosphorylation of MAPK, keratinocytes were serum starved for 3 h prior to harvesting of cells by incubation in medium lacking serum.
T13182 765-768 IN denotes For
T13183 841-848 VBN denotes starved
T13184 769-780 NNS denotes experiments
T13185 781-790 VBG denotes measuring
T13186 791-806 NN denotes phosphorylation
T13187 807-809 IN denotes of
T13188 810-814 NN denotes MAPK
T13189 814-816 , denotes ,
T13190 816-829 NNS denotes keratinocytes
T13191 830-834 VBD denotes were
T13192 835-840 NN denotes serum
T13193 849-852 IN denotes for
T13194 853-854 CD denotes 3
T13195 855-856 NN denotes h
T13196 857-862 JJ denotes prior
T13197 863-865 IN denotes to
T13198 866-876 NN denotes harvesting
T13199 877-879 IN denotes of
T13200 880-885 NNS denotes cells
T13201 886-888 IN denotes by
T13202 889-899 NN denotes incubation
T13203 900-902 IN denotes in
T13204 903-909 NN denotes medium
T13205 910-917 VBG denotes lacking
T13206 918-923 NN denotes serum
T13207 923-924 . denotes .
T13208 924-1013 sentence denotes Treatment of cells with Wnt- and noggin-conditioned medium was previously described [4].
T13209 925-934 NN denotes Treatment
T13210 999-1008 VBN denotes described
T13211 935-937 IN denotes of
T13212 938-943 NNS denotes cells
T13213 944-948 IN denotes with
T13214 949-952 NN denotes Wnt
T13215 965-976 VBN denotes conditioned
T13216 952-953 HYPH denotes -
T13217 954-957 CC denotes and
T13218 958-964 NN denotes noggin
T13219 964-965 HYPH denotes -
T13220 977-983 NN denotes medium
T13221 984-987 VBD denotes was
T13222 988-998 RB denotes previously
T13223 1009-1010 -LRB- denotes [
T13224 1010-1011 CD denotes 4
T13225 1011-1012 -RRB- denotes ]
T13226 1012-1013 . denotes .
R8431 T13041 T13042 compound Cell,culture
R8432 T13044 T13045 amod Primary,keratinocytes
R8433 T13045 T13046 nsubjpass keratinocytes,culture
R8434 T13047 T13046 auxpass were,culture
R8435 T13048 T13046 prep in,culture
R8436 T13049 T13050 amod low,calcium
R8437 T13050 T13052 compound calcium,medium
R8438 T13051 T13050 punct -,calcium
R8439 T13052 T13048 pobj medium,in
R8440 T13053 T13054 mark as,described
R8441 T13054 T13046 advcl described,culture
R8442 T13055 T13054 advmod previously,described
R8443 T13056 T13057 punct [,4
R8444 T13057 T13046 parataxis 4,culture
R8445 T13058 T13057 punct ],4
R8446 T13059 T13046 punct .,culture
R8447 T13061 T13062 amod Transient,transfections
R8448 T13062 T13063 nsubjpass transfections,carried
R8449 T13064 T13063 auxpass were,carried
R8450 T13065 T13063 prt out,carried
R8451 T13066 T13063 prep with,carried
R8452 T13067 T13068 compound FuGENE6,reagent
R8453 T13068 T13066 pobj reagent,with
R8454 T13069 T13070 punct (,Roche
R8455 T13070 T13068 parataxis Roche,reagent
R8456 T13071 T13070 punct ", ",Roche
R8457 T13072 T13070 npadvmod Indianapolis,Roche
R8458 T13073 T13070 punct ", ",Roche
R8459 T13074 T13070 npadvmod Indiana,Roche
R8460 T13075 T13070 punct ", ",Roche
R8461 T13076 T13077 compound United,States
R8462 T13077 T13070 npadvmod States,Roche
R8463 T13078 T13070 punct ),Roche
R8464 T13079 T13063 prep according,carried
R8465 T13080 T13079 prep to,according
R8466 T13081 T13082 det the,manufacturer
R8467 T13082 T13083 poss manufacturer,protocol
R8468 T13083 T13080 pobj protocol,to
R8469 T13084 T13082 case 's,manufacturer
R8470 T13085 T13063 punct .,carried
R8471 T13087 T13088 nsubjpass Measurement,carried
R8472 T13089 T13087 prep of,Measurement
R8473 T13090 T13091 nmod β,galactosidase
R8474 T13091 T13093 nmod galactosidase,levels
R8475 T13092 T13091 punct -,galactosidase
R8476 T13093 T13089 pobj levels,of
R8477 T13094 T13091 cc or,galactosidase
R8478 T13095 T13091 conj luciferase,galactosidase
R8479 T13096 T13088 prep in,carried
R8480 T13097 T13098 compound promoter,activity
R8481 T13098 T13099 compound activity,studies
R8482 T13099 T13096 pobj studies,in
R8483 T13100 T13088 auxpass were,carried
R8484 T13101 T13088 prt out,carried
R8485 T13102 T13088 prep with,carried
R8486 T13103 T13104 det the,kit
R8487 T13104 T13102 pobj kit,with
R8488 T13105 T13106 compound Galacto,Lite
R8489 T13106 T13104 compound Lite,kit
R8490 T13107 T13106 punct -,Lite
R8491 T13108 T13104 compound assay,kit
R8492 T13109 T13110 punct (,TROPIX
R8493 T13110 T13104 parataxis TROPIX,kit
R8494 T13111 T13110 punct ", ",TROPIX
R8495 T13112 T13110 npadvmod Bedford,TROPIX
R8496 T13113 T13110 punct ", ",TROPIX
R8497 T13114 T13110 npadvmod Massachusetts,TROPIX
R8498 T13115 T13110 punct ", ",TROPIX
R8499 T13116 T13117 compound United,States
R8500 T13117 T13110 npadvmod States,TROPIX
R8501 T13118 T13110 punct ),TROPIX
R8502 T13119 T13104 cc and,kit
R8503 T13120 T13121 det the,luciferase
R8504 T13121 T13104 conj luciferase,kit
R8505 T13122 T13121 amod Dual,luciferase
R8506 T13123 T13124 punct (,Promega
R8507 T13124 T13121 parataxis Promega,luciferase
R8508 T13125 T13124 punct ", ",Promega
R8509 T13126 T13124 npadvmod Madison,Promega
R8510 T13127 T13124 punct ", ",Promega
R8511 T13128 T13124 npadvmod Wisconsin,Promega
R8512 T13129 T13124 punct ", ",Promega
R8513 T13130 T13131 compound United,States
R8514 T13131 T13124 npadvmod States,Promega
R8515 T13132 T13124 punct ),Promega
R8516 T13133 T13121 punct ", ",luciferase
R8517 T13134 T13088 advmod respectively,carried
R8518 T13135 T13088 punct .,carried
R8519 T13137 T13138 compound Runella,luciferase
R8520 T13138 T13139 nsubjpass luciferase,cotransfected
R8521 T13140 T13139 auxpass was,cotransfected
R8522 T13141 T13139 prep into,cotransfected
R8523 T13142 T13141 pobj cells,into
R8524 T13143 T13144 aux to,correct
R8525 T13144 T13139 advcl correct,cotransfected
R8526 T13145 T13144 prep for,correct
R8527 T13146 T13147 compound transfection,efficiency
R8528 T13147 T13145 pobj efficiency,for
R8529 T13148 T13139 punct .,cotransfected
R8530 T13150 T13151 nsubjpass Experiments,done
R8531 T13152 T13151 auxpass were,done
R8532 T13153 T13151 prep in,done
R8533 T13154 T13153 pobj triplicate,in
R8534 T13155 T13151 cc and,done
R8535 T13156 T13151 conj repeated,done
R8536 T13157 T13158 advmod at,three
R8537 T13158 T13160 nummod three,times
R8538 T13159 T13158 advmod least,three
R8539 T13160 T13156 npadvmod times,repeated
R8540 T13161 T13151 punct .,done
R8541 T13163 T13164 nsubjpass Measurements,done
R8542 T13165 T13164 auxpass were,done
R8543 T13166 T13164 prep on,done
R8544 T13167 T13168 det a,luminometer
R8545 T13168 T13166 pobj luminometer,on
R8546 T13169 T13170 punct (,Instruments
R8547 T13170 T13168 parataxis Instruments,luminometer
R8548 T13171 T13170 compound MGM,Instruments
R8549 T13172 T13170 punct ", ",Instruments
R8550 T13173 T13170 npadvmod Hamden,Instruments
R8551 T13174 T13170 punct ", ",Instruments
R8552 T13175 T13170 npadvmod Connecticut,Instruments
R8553 T13176 T13170 punct ", ",Instruments
R8554 T13177 T13178 compound United,States
R8555 T13178 T13170 npadvmod States,Instruments
R8556 T13179 T13170 punct ),Instruments
R8557 T13180 T13164 punct .,done
R8558 T13182 T13183 prep For,starved
R8559 T13184 T13182 pobj experiments,For
R8560 T13185 T13184 acl measuring,experiments
R8561 T13186 T13185 dobj phosphorylation,measuring
R8562 T13187 T13186 prep of,phosphorylation
R8563 T13188 T13187 pobj MAPK,of
R8564 T13189 T13183 punct ", ",starved
R8565 T13190 T13183 nsubjpass keratinocytes,starved
R8566 T13191 T13183 auxpass were,starved
R8567 T13192 T13183 dep serum,starved
R8568 T13193 T13183 prep for,starved
R8569 T13194 T13195 nummod 3,h
R8570 T13195 T13193 pobj h,for
R8571 T13196 T13197 amod prior,to
R8572 T13197 T13183 prep to,starved
R8573 T13198 T13197 pobj harvesting,to
R8574 T13199 T13198 prep of,harvesting
R8575 T13200 T13199 pobj cells,of
R8576 T13201 T13198 prep by,harvesting
R8577 T13202 T13201 pobj incubation,by
R8578 T13203 T13202 prep in,incubation
R8579 T13204 T13203 pobj medium,in
R8580 T13205 T13204 acl lacking,medium
R8581 T13206 T13205 dobj serum,lacking
R8582 T13207 T13183 punct .,starved
R8583 T13209 T13210 nsubjpass Treatment,described
R8584 T13211 T13209 prep of,Treatment
R8585 T13212 T13211 pobj cells,of
R8586 T13213 T13209 prep with,Treatment
R8587 T13214 T13215 npadvmod Wnt,conditioned
R8588 T13215 T13220 amod conditioned,medium
R8589 T13216 T13214 punct -,Wnt
R8590 T13217 T13214 cc and,Wnt
R8591 T13218 T13214 conj noggin,Wnt
R8592 T13219 T13215 punct -,conditioned
R8593 T13220 T13213 pobj medium,with
R8594 T13221 T13210 auxpass was,described
R8595 T13222 T13210 advmod previously,described
R8596 T13223 T13224 punct [,4
R8597 T13224 T13210 parataxis 4,described
R8598 T13225 T13224 punct ],4
R8599 T13226 T13210 punct .,described