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PMC:539061 / 38973-39640 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6883 22-27 PR:000015308 denotes Snail
T6884 28-38 GO:0010467 denotes expression
T6885 89-94 PR:000015308 denotes Snail
T6886 95-103 SO:0000167 denotes promoter
T6887 116-129 CL:0000312 denotes keratinocytes
T6888 152-158 PR:000000183 denotes TGF-β2
T6889 224-233 SO:0000902 denotes transgene
T6890 281-288 GO:0065007 denotes control
T6891 316-324 SO:0000167 denotes promoter
T6892 354-383 SO:0000315 denotes transcription initiation site
T6893 379-386 _FRAGMENT denotes site of
T6894 403-407 SO:0000842 denotes gene
T6895 391-396 NCBITaxon:10088 denotes mouse
T6896 397-402 PR:000015308 denotes Snail
T6897 432-444 GO:0009294 denotes transfection
T6898 446-459 CL:0000312 denotes keratinocytes
T6899 478-484 PR:000000183 denotes TGF-β2
T6900 514-523 SO:0000902 denotes transgene
T6901 584-589 PR:000015308 denotes Snail
R4162 T6894 T6893 _lexicallyChainedTo gene,site of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7141 22-27 PR_EXT:000015308 denotes Snail
T7142 28-38 GO:0010467 denotes expression
T7143 61-65 CHEBI_SO_EXT:mRNA denotes mRNA
T7144 89-94 PR_EXT:000015308 denotes Snail
T7145 95-103 SO_EXT:0000167 denotes promoter
T7146 116-129 CL:0000312 denotes keratinocytes
T7147 152-158 PR_EXT:000000183 denotes TGF-β2
T7148 159-168 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T7149 224-233 SO_EXT:0000902 denotes transgene
T7150 246-261 GO_EXT:0004565 denotes β-galactosidase
T7151 281-288 GO:0065007 denotes control
T7152 311-312 CHEBI_SO_EXT:base denotes b
T7153 316-324 SO_EXT:0000167 denotes promoter
T7154 325-333 SO_EXT:biological_sequence denotes sequence
T7155 342-344 SO_EXT:sequence_upstreamness denotes 5′
T7156 354-367 GO_EXT:transcription denotes transcription
T7157 354-383 SO_EXT:0000315 denotes transcription initiation site
T7158 379-386 _FRAGMENT denotes site of
T7159 403-407 SO_EXT:0000842 denotes gene
T7160 391-396 NCBITaxon:10088 denotes mouse
T7161 397-402 PR_EXT:000015308 denotes Snail
T7162 432-444 GO:0009294 denotes transfection
T7163 446-459 CL:0000312 denotes keratinocytes
T7164 478-484 PR_EXT:000000183 denotes TGF-β2
T7165 514-523 SO_EXT:0000902 denotes transgene
T7166 584-589 PR_EXT:000015308 denotes Snail
T7167 590-597 CHEBI_PR_EXT:protein denotes protein
R4169 T7159 T7158 _lexicallyChainedTo gene,site of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7954 0-3 DT denotes The
T7955 10-18 NNS denotes kinetics
T7956 4-9 JJ denotes rapid
T7957 44-53 VBN denotes reflected
T7958 19-21 IN denotes of
T7959 22-27 NN denotes Snail
T7960 28-38 NN denotes expression
T7961 39-43 VBD denotes were
T7962 54-56 IN denotes at
T7963 57-60 DT denotes the
T7964 66-71 NN denotes level
T7965 61-65 NN denotes mRNA
T7966 71-73 , denotes ,
T7967 73-83 VBG denotes suggesting
T7968 84-88 IN denotes that
T7969 136-138 VB denotes be
T7970 89-94 NN denotes Snail
T7971 95-103 NN denotes promoter
T7972 104-112 NN denotes activity
T7973 113-115 IN denotes in
T7974 116-129 NNS denotes keratinocytes
T7975 130-135 MD denotes might
T7976 139-148 JJ denotes sensitive
T7977 149-151 IN denotes to
T7978 152-155 NN denotes TGF
T7979 156-158 NN denotes β2
T7980 155-156 HYPH denotes -
T7981 159-168 NN denotes signaling
T7982 169-170 -LRB- denotes (
T7983 177-179 NN denotes 5C
T7984 170-176 NN denotes Figure
T7985 179-180 -RRB- denotes )
T7986 180-181 . denotes .
T7987 181-408 sentence denotes To test this possibility, we engineered a transgene driving the β-galactosidase reporter under the control of approximately 2.2 kb of promoter sequence located 5′ from the transcription initiation site of the mouse Snail gene.
T7988 182-184 TO denotes To
T7989 185-189 VB denotes test
T7990 211-221 VBD denotes engineered
T7991 190-194 DT denotes this
T7992 195-206 NN denotes possibility
T7993 206-208 , denotes ,
T7994 208-210 PRP denotes we
T7995 222-223 DT denotes a
T7996 224-233 NN denotes transgene
T7997 234-241 VBG denotes driving
T7998 242-245 DT denotes the
T7999 262-270 NN denotes reporter
T8000 246-247 NN denotes β
T8001 248-261 NN denotes galactosidase
T8002 247-248 HYPH denotes -
T8003 271-276 IN denotes under
T8004 277-280 DT denotes the
T8005 281-288 NN denotes control
T8006 289-291 IN denotes of
T8007 292-305 RB denotes approximately
T8008 306-309 CD denotes 2.2
T8009 310-312 NN denotes kb
T8010 313-315 IN denotes of
T8011 316-324 NN denotes promoter
T8012 325-333 NN denotes sequence
T8013 334-341 VBN denotes located
T8014 342-343 CD denotes 5
T8015 343-344 SYM denotes ′
T8016 345-349 IN denotes from
T8017 350-353 DT denotes the
T8018 379-383 NN denotes site
T8019 354-367 NN denotes transcription
T8020 368-378 NN denotes initiation
T8021 384-386 IN denotes of
T8022 387-390 DT denotes the
T8023 403-407 NN denotes gene
T8024 391-396 NN denotes mouse
T8025 397-402 NN denotes Snail
T8026 407-408 . denotes .
T8027 408-608 sentence denotes At 2 d after transient transfection, keratinocytes were treated with TGF-β2 (t = 0) and then assayed for transgene activity over the same time course in which we had observed Snail protein induction.
T8028 409-411 IN denotes At
T8029 465-472 VBN denotes treated
T8030 412-413 CD denotes 2
T8031 414-415 NN denotes d
T8032 416-421 IN denotes after
T8033 422-431 JJ denotes transient
T8034 432-444 NN denotes transfection
T8035 444-446 , denotes ,
T8036 446-459 NNS denotes keratinocytes
T8037 460-464 VBD denotes were
T8038 473-477 IN denotes with
T8039 478-481 NN denotes TGF
T8040 482-484 NN denotes β2
T8041 481-482 HYPH denotes -
T8042 485-486 -LRB- denotes (
T8043 490-491 CD denotes 0
T8044 486-487 NN denotes t
T8045 488-489 SYM denotes =
T8046 491-492 -RRB- denotes )
T8047 493-496 CC denotes and
T8048 497-501 RB denotes then
T8049 502-509 VBN denotes assayed
T8050 510-513 IN denotes for
T8051 514-523 NN denotes transgene
T8052 524-532 NN denotes activity
T8053 533-537 IN denotes over
T8054 538-541 DT denotes the
T8055 552-558 NN denotes course
T8056 542-546 JJ denotes same
T8057 547-551 NN denotes time
T8058 559-561 IN denotes in
T8059 575-583 VBN denotes observed
T8060 562-567 WDT denotes which
T8061 568-570 PRP denotes we
T8062 571-574 VBD denotes had
T8063 584-589 NN denotes Snail
T8064 590-597 NN denotes protein
T8065 598-607 NN denotes induction
T8066 607-608 . denotes .
T8067 608-667 sentence denotes The results of this experiment are presented in Figure 5D.
T8068 609-612 DT denotes The
T8069 613-620 NNS denotes results
T8070 644-653 VBN denotes presented
T8071 621-623 IN denotes of
T8072 624-628 DT denotes this
T8073 629-639 NN denotes experiment
T8074 640-643 VBP denotes are
T8075 654-656 IN denotes in
T8076 657-663 NN denotes Figure
T8077 664-666 NN denotes 5D
T8078 666-667 . denotes .
R4736 T7954 T7955 det The,kinetics
R4737 T7955 T7957 nsubjpass kinetics,reflected
R4738 T7956 T7955 amod rapid,kinetics
R4739 T7958 T7955 prep of,kinetics
R4740 T7959 T7960 compound Snail,expression
R4741 T7960 T7958 pobj expression,of
R4742 T7961 T7957 auxpass were,reflected
R4743 T7962 T7957 prep at,reflected
R4744 T7963 T7964 det the,level
R4745 T7964 T7962 pobj level,at
R4746 T7965 T7964 compound mRNA,level
R4747 T7966 T7957 punct ", ",reflected
R4748 T7967 T7957 advcl suggesting,reflected
R4749 T7968 T7969 mark that,be
R4750 T7969 T7967 ccomp be,suggesting
R4751 T7970 T7971 compound Snail,promoter
R4752 T7971 T7972 compound promoter,activity
R4753 T7972 T7969 nsubj activity,be
R4754 T7973 T7972 prep in,activity
R4755 T7974 T7973 pobj keratinocytes,in
R4756 T7975 T7969 aux might,be
R4757 T7976 T7969 acomp sensitive,be
R4758 T7977 T7976 prep to,sensitive
R4759 T7978 T7979 compound TGF,β2
R4760 T7979 T7981 compound β2,signaling
R4761 T7980 T7979 punct -,β2
R4762 T7981 T7977 pobj signaling,to
R4763 T7982 T7983 punct (,5C
R4764 T7983 T7957 parataxis 5C,reflected
R4765 T7984 T7983 compound Figure,5C
R4766 T7985 T7983 punct ),5C
R4767 T7986 T7957 punct .,reflected
R4768 T7988 T7989 aux To,test
R4769 T7989 T7990 advcl test,engineered
R4770 T7991 T7992 det this,possibility
R4771 T7992 T7989 dobj possibility,test
R4772 T7993 T7990 punct ", ",engineered
R4773 T7994 T7990 nsubj we,engineered
R4774 T7995 T7996 det a,transgene
R4775 T7996 T7990 dobj transgene,engineered
R4776 T7997 T7996 acl driving,transgene
R4777 T7998 T7999 det the,reporter
R4778 T7999 T7997 dobj reporter,driving
R4779 T8000 T8001 compound β,galactosidase
R4780 T8001 T7999 compound galactosidase,reporter
R4781 T8002 T8001 punct -,galactosidase
R4782 T8003 T7997 prep under,driving
R4783 T8004 T8005 det the,control
R4784 T8005 T8003 pobj control,under
R4785 T8006 T8005 prep of,control
R4786 T8007 T8008 advmod approximately,2.2
R4787 T8008 T8009 nummod 2.2,kb
R4788 T8009 T8006 pobj kb,of
R4789 T8010 T8009 prep of,kb
R4790 T8011 T8012 compound promoter,sequence
R4791 T8012 T8010 pobj sequence,of
R4792 T8013 T8012 acl located,sequence
R4793 T8014 T8013 npadvmod 5,located
R4794 T8015 T8014 punct ′,5
R4795 T8016 T8014 prep from,5
R4796 T8017 T8018 det the,site
R4797 T8018 T8016 pobj site,from
R4798 T8019 T8018 compound transcription,site
R4799 T8020 T8018 compound initiation,site
R4800 T8021 T8018 prep of,site
R4801 T8022 T8023 det the,gene
R4802 T8023 T8021 pobj gene,of
R4803 T8024 T8023 compound mouse,gene
R4804 T8025 T8023 compound Snail,gene
R4805 T8026 T7990 punct .,engineered
R4806 T8028 T8029 prep At,treated
R4807 T8030 T8031 nummod 2,d
R4808 T8031 T8028 pobj d,At
R4809 T8032 T8031 prep after,d
R4810 T8033 T8034 amod transient,transfection
R4811 T8034 T8032 pobj transfection,after
R4812 T8035 T8029 punct ", ",treated
R4813 T8036 T8029 nsubjpass keratinocytes,treated
R4814 T8037 T8029 auxpass were,treated
R4815 T8038 T8029 prep with,treated
R4816 T8039 T8040 compound TGF,β2
R4817 T8040 T8038 pobj β2,with
R4818 T8041 T8040 punct -,β2
R4819 T8042 T8043 punct (,0
R4820 T8043 T8029 parataxis 0,treated
R4821 T8044 T8043 nsubj t,0
R4822 T8045 T8043 punct =,0
R4823 T8046 T8043 punct ),0
R4824 T8047 T8029 cc and,treated
R4825 T8048 T8049 advmod then,assayed
R4826 T8049 T8029 conj assayed,treated
R4827 T8050 T8049 prep for,assayed
R4828 T8051 T8052 compound transgene,activity
R4829 T8052 T8050 pobj activity,for
R4830 T8053 T8049 prep over,assayed
R4831 T8054 T8055 det the,course
R4832 T8055 T8053 pobj course,over
R4833 T8056 T8055 amod same,course
R4834 T8057 T8055 compound time,course
R4835 T8058 T8059 prep in,observed
R4836 T8059 T8055 relcl observed,course
R4837 T8060 T8058 pobj which,in
R4838 T8061 T8059 nsubj we,observed
R4839 T8062 T8059 aux had,observed
R4840 T8063 T8064 compound Snail,protein
R4841 T8064 T8065 compound protein,induction
R4842 T8065 T8059 dobj induction,observed
R4843 T8066 T8029 punct .,treated
R4844 T8068 T8069 det The,results
R4845 T8069 T8070 nsubjpass results,presented
R4846 T8071 T8069 prep of,results
R4847 T8072 T8073 det this,experiment
R4848 T8073 T8071 pobj experiment,of
R4849 T8074 T8070 auxpass are,presented
R4850 T8075 T8070 prep in,presented
R4851 T8076 T8077 compound Figure,5D
R4852 T8077 T8075 pobj 5D,in
R4853 T8078 T8070 punct .,presented