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PMC:539061 / 34023-34607 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6805 22-27 PR:000015308 denotes Snail
T6806 33-43 GO:0010467 denotes expression
T6807 51-55 UBERON:0001037 denotes hair
T6808 106-116 GO:0065007 denotes regulating
T6809 121-126 PR:000015308 denotes Snail
T6810 127-131 SO:0000704 denotes gene
T6811 146-159 GO:0005576 denotes extracellular
T6812 209-219 GO:0010467 denotes expression
T6813 233-238 PR:000015308 denotes Snail
T6814 289-293 PR:000000034 denotes BMPs
T6815 305-311 PR:000000046 denotes TGF-βs
T6816 325-329 UBERON:0001037 denotes hair
T6817 363-368 PR:000015308 denotes Snail
T6818 376-385 GO:0010467 denotes expressed
T6819 403-416 CL:0000312 denotes keratinocytes
T6820 422-429 GO:0046903 denotes secrete
T6821 437-441 PR:000000034 denotes BMPs
T6822 496-499 _FRAGMENT denotes Wnt
T6823 510-519 GO:0016055 denotes signaling
T6824 504-509 PR:000000046 denotes TGF-β
T6825 504-519 GO:0007179 denotes TGF-β signaling
T6826 550-555 PR:000015308 denotes Snail
R4160 T6823 T6822 _lexicallyChainedTo signaling,Wnt

2_test

Id Subject Object Predicate Lexical cue
15630473-11841536-84810277 347-348 11841536 denotes 2
15630473-11994736-84810278 349-351 11994736 denotes 16
15630473-7626420-84810279 352-354 7626420 denotes 28
T39921 347-348 11841536 denotes 2
T6199 349-351 11994736 denotes 16
T84568 352-354 7626420 denotes 28

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7038 22-27 PR_EXT:000015308 denotes Snail
T7039 28-32 CHEBI_SO_EXT:mRNA denotes mRNA
T7040 33-43 GO:0010467 denotes expression
T7041 51-55 UBERON:0001037 denotes hair
T7043 121-126 PR_EXT:000015308 denotes Snail
T7044 127-131 SO_EXT:0000704 denotes gene
T7045 146-159 GO:0005576 denotes extracellular
T7046 151-159 CL_GO_EXT:cell denotes cellular
T7047 190-194 CL_GO_EXT:cell denotes cell
T7048 209-219 GO:0010467 denotes expression
T7049 233-238 PR_EXT:000015308 denotes Snail
T7050 289-293 PR_EXT:000000034 denotes BMPs
T7051 305-311 PR_EXT:000000046 denotes TGF-βs
T7052 325-329 UBERON:0001037 denotes hair
T7053 363-368 PR_EXT:000015308 denotes Snail
T7054 376-385 GO:0010467 denotes expressed
T7055 398-402 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T7056 403-416 CL:0000312 denotes keratinocytes
T7057 422-429 GO:0046903 denotes secrete
T7058 437-441 PR_EXT:000000034 denotes BMPs
T7059 496-499 _FRAGMENT denotes Wnt
T7060 510-519 GO:0016055 denotes signaling
T7061 504-509 PR_EXT:000000046 denotes TGF-β
T7062 504-519 GO:0007179 denotes TGF-β signaling
T7063 550-555 PR_EXT:000015308 denotes Snail
T7064 574-578 CL_GO_EXT:cell denotes cell
T7042 106-116 GO:0065007 denotes regulating
R4166 T7060 T7059 _lexicallyChainedTo signaling,Wnt

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7376 0-3 DT denotes The
T7377 13-18 NN denotes spike
T7378 4-12 JJ denotes temporal
T7379 60-68 VBD denotes prompted
T7380 19-21 IN denotes of
T7381 22-27 NN denotes Snail
T7382 33-43 NN denotes expression
T7383 28-32 NN denotes mRNA
T7384 44-46 IN denotes in
T7385 47-50 DT denotes the
T7386 56-59 NN denotes bud
T7387 51-55 NN denotes hair
T7388 69-71 PRP denotes us
T7389 72-74 TO denotes to
T7390 75-83 VB denotes consider
T7391 84-88 WDT denotes what
T7392 89-95 NN denotes factor
T7393 106-116 VBG denotes regulating
T7394 95-96 -LRB- denotes (
T7395 96-97 AFX denotes s
T7396 97-98 -RRB- denotes )
T7397 99-102 MD denotes may
T7398 103-105 VB denotes be
T7399 117-120 DT denotes the
T7400 127-131 NN denotes gene
T7401 121-126 NN denotes Snail
T7402 131-132 . denotes .
T7403 132-356 sentence denotes A variety of extracellular signals have an impact on the cell type-specific expression of different Snail family members, and many of them, including Wnts, BMPs, FGFs, and TGF-βs, also affect hair bud development [2,16,28].
T7404 133-134 DT denotes A
T7405 135-142 NN denotes variety
T7406 168-172 VBP denotes have
T7407 143-145 IN denotes of
T7408 146-159 JJ denotes extracellular
T7409 160-167 NNS denotes signals
T7410 173-175 DT denotes an
T7411 176-182 NN denotes impact
T7412 183-185 IN denotes on
T7413 186-189 DT denotes the
T7414 209-219 NN denotes expression
T7415 190-194 NN denotes cell
T7416 195-199 NN denotes type
T7417 200-208 JJ denotes specific
T7418 199-200 HYPH denotes -
T7419 220-222 IN denotes of
T7420 223-232 JJ denotes different
T7421 246-253 NNS denotes members
T7422 233-238 NN denotes Snail
T7423 239-245 NN denotes family
T7424 253-255 , denotes ,
T7425 255-258 CC denotes and
T7426 259-263 JJ denotes many
T7427 318-324 VBP denotes affect
T7428 264-266 IN denotes of
T7429 267-271 PRP denotes them
T7430 271-273 , denotes ,
T7431 273-282 VBG denotes including
T7432 283-287 NNS denotes Wnts
T7433 287-289 , denotes ,
T7434 289-293 NNS denotes BMPs
T7435 293-295 , denotes ,
T7436 295-299 NNS denotes FGFs
T7437 299-301 , denotes ,
T7438 301-304 CC denotes and
T7439 305-308 NN denotes TGF
T7440 309-311 NNS denotes βs
T7441 308-309 HYPH denotes -
T7442 311-313 , denotes ,
T7443 313-317 RB denotes also
T7444 325-329 NN denotes hair
T7445 330-333 NN denotes bud
T7446 334-345 NN denotes development
T7447 346-347 -LRB- denotes [
T7448 352-354 CD denotes 28
T7449 347-348 CD denotes 2
T7450 348-349 , denotes ,
T7451 349-351 CD denotes 16
T7452 351-352 , denotes ,
T7453 354-355 -RRB- denotes ]
T7454 355-356 . denotes .
T7455 356-584 sentence denotes Since Snail is not expressed in cultured skin keratinocytes that secrete active BMPs and FGFs (see Figure 1B), we focused our attention on Wnt and TGF-β signaling as more likely candidates for Snail induction in this cell type.
T7456 357-362 IN denotes Since
T7457 376-385 VBN denotes expressed
T7458 363-368 NN denotes Snail
T7459 369-371 VBZ denotes is
T7460 372-375 RB denotes not
T7461 471-478 VBD denotes focused
T7462 386-388 IN denotes in
T7463 389-397 VBN denotes cultured
T7464 403-416 NNS denotes keratinocytes
T7465 398-402 NN denotes skin
T7466 417-421 WDT denotes that
T7467 422-429 VBP denotes secrete
T7468 430-436 JJ denotes active
T7469 437-441 NNS denotes BMPs
T7470 442-445 CC denotes and
T7471 446-450 NNS denotes FGFs
T7472 451-452 -LRB- denotes (
T7473 452-455 VB denotes see
T7474 456-462 NN denotes Figure
T7475 463-465 NN denotes 1B
T7476 465-466 -RRB- denotes )
T7477 466-468 , denotes ,
T7478 468-470 PRP denotes we
T7479 479-482 PRP$ denotes our
T7480 483-492 NN denotes attention
T7481 493-495 IN denotes on
T7482 496-499 NN denotes Wnt
T7483 510-519 NN denotes signaling
T7484 500-503 CC denotes and
T7485 504-507 NN denotes TGF
T7486 508-509 NN denotes β
T7487 507-508 HYPH denotes -
T7488 520-522 IN denotes as
T7489 523-527 RBR denotes more
T7490 528-534 JJ denotes likely
T7491 535-545 NNS denotes candidates
T7492 546-549 IN denotes for
T7493 550-555 NN denotes Snail
T7494 556-565 NN denotes induction
T7495 566-568 IN denotes in
T7496 569-573 DT denotes this
T7497 579-583 NN denotes type
T7498 574-578 NN denotes cell
T7499 583-584 . denotes .
R4192 T7376 T7377 det The,spike
R4193 T7377 T7379 nsubj spike,prompted
R4194 T7378 T7377 amod temporal,spike
R4195 T7380 T7377 prep of,spike
R4196 T7381 T7382 compound Snail,expression
R4197 T7382 T7380 pobj expression,of
R4198 T7383 T7382 compound mRNA,expression
R4199 T7384 T7377 prep in,spike
R4200 T7385 T7386 det the,bud
R4201 T7386 T7384 pobj bud,in
R4202 T7387 T7386 compound hair,bud
R4203 T7388 T7379 dobj us,prompted
R4204 T7389 T7390 aux to,consider
R4205 T7390 T7379 xcomp consider,prompted
R4206 T7391 T7392 det what,factor
R4207 T7392 T7393 dep factor,regulating
R4208 T7393 T7390 ccomp regulating,consider
R4209 T7394 T7392 punct (,factor
R4210 T7395 T7392 nmod s,factor
R4211 T7396 T7392 punct ),factor
R4212 T7397 T7393 aux may,regulating
R4213 T7398 T7393 aux be,regulating
R4214 T7399 T7400 det the,gene
R4215 T7400 T7393 dobj gene,regulating
R4216 T7401 T7400 compound Snail,gene
R4217 T7402 T7379 punct .,prompted
R4218 T7404 T7405 det A,variety
R4219 T7405 T7406 nsubj variety,have
R4220 T7407 T7405 prep of,variety
R4221 T7408 T7409 amod extracellular,signals
R4222 T7409 T7407 pobj signals,of
R4223 T7410 T7411 det an,impact
R4224 T7411 T7406 dobj impact,have
R4225 T7412 T7411 prep on,impact
R4226 T7413 T7414 det the,expression
R4227 T7414 T7412 pobj expression,on
R4228 T7415 T7416 compound cell,type
R4229 T7416 T7417 npadvmod type,specific
R4230 T7417 T7414 amod specific,expression
R4231 T7418 T7417 punct -,specific
R4232 T7419 T7414 prep of,expression
R4233 T7420 T7421 amod different,members
R4234 T7421 T7419 pobj members,of
R4235 T7422 T7423 compound Snail,family
R4236 T7423 T7421 compound family,members
R4237 T7424 T7406 punct ", ",have
R4238 T7425 T7406 cc and,have
R4239 T7426 T7427 nsubj many,affect
R4240 T7427 T7406 conj affect,have
R4241 T7428 T7426 prep of,many
R4242 T7429 T7428 pobj them,of
R4243 T7430 T7426 punct ", ",many
R4244 T7431 T7426 prep including,many
R4245 T7432 T7431 pobj Wnts,including
R4246 T7433 T7432 punct ", ",Wnts
R4247 T7434 T7432 conj BMPs,Wnts
R4248 T7435 T7434 punct ", ",BMPs
R4249 T7436 T7434 conj FGFs,BMPs
R4250 T7437 T7436 punct ", ",FGFs
R4251 T7438 T7436 cc and,FGFs
R4252 T7439 T7440 compound TGF,βs
R4253 T7440 T7436 conj βs,FGFs
R4254 T7441 T7440 punct -,βs
R4255 T7442 T7427 punct ", ",affect
R4256 T7443 T7427 advmod also,affect
R4257 T7444 T7445 compound hair,bud
R4258 T7445 T7446 compound bud,development
R4259 T7446 T7427 dobj development,affect
R4260 T7447 T7448 punct [,28
R4261 T7448 T7427 parataxis 28,affect
R4262 T7449 T7448 nummod 2,28
R4263 T7450 T7448 punct ",",28
R4264 T7451 T7448 nummod 16,28
R4265 T7452 T7448 punct ",",28
R4266 T7453 T7448 punct ],28
R4267 T7454 T7427 punct .,affect
R4268 T7456 T7457 mark Since,expressed
R4269 T7457 T7461 advcl expressed,focused
R4270 T7458 T7457 nsubjpass Snail,expressed
R4271 T7459 T7457 auxpass is,expressed
R4272 T7460 T7457 neg not,expressed
R4273 T7462 T7457 prep in,expressed
R4274 T7463 T7464 amod cultured,keratinocytes
R4275 T7464 T7462 pobj keratinocytes,in
R4276 T7465 T7464 compound skin,keratinocytes
R4277 T7466 T7467 dep that,secrete
R4278 T7467 T7464 relcl secrete,keratinocytes
R4279 T7468 T7469 amod active,BMPs
R4280 T7469 T7467 dobj BMPs,secrete
R4281 T7470 T7469 cc and,BMPs
R4282 T7471 T7469 conj FGFs,BMPs
R4283 T7472 T7473 punct (,see
R4284 T7473 T7457 parataxis see,expressed
R4285 T7474 T7475 compound Figure,1B
R4286 T7475 T7473 dobj 1B,see
R4287 T7476 T7473 punct ),see
R4288 T7477 T7461 punct ", ",focused
R4289 T7478 T7461 nsubj we,focused
R4290 T7479 T7480 poss our,attention
R4291 T7480 T7461 dobj attention,focused
R4292 T7481 T7461 prep on,focused
R4293 T7482 T7483 nmod Wnt,signaling
R4294 T7483 T7481 pobj signaling,on
R4295 T7484 T7482 cc and,Wnt
R4296 T7485 T7486 compound TGF,β
R4297 T7486 T7482 conj β,Wnt
R4298 T7487 T7486 punct -,β
R4299 T7488 T7483 prep as,signaling
R4300 T7489 T7490 advmod more,likely
R4301 T7490 T7491 amod likely,candidates
R4302 T7491 T7488 pobj candidates,as
R4303 T7492 T7491 prep for,candidates
R4304 T7493 T7494 compound Snail,induction
R4305 T7494 T7492 pobj induction,for
R4306 T7495 T7491 prep in,candidates
R4307 T7496 T7497 det this,type
R4308 T7497 T7495 pobj type,in
R4309 T7498 T7497 compound cell,type
R4310 T7499 T7461 punct .,focused