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PMC:539061 / 2275-3073 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T589 64-89 PR:000000034 denotes bone morphogenic proteins
T590 91-95 PR:000000034 denotes BMPs
T591 98-127 PR:000000046 denotes transforming growth factor βs
T592 129-135 PR:000000046 denotes TGF-βs
T593 142-152 CL:0000057 denotes fibroblast
T594 198-210 GO:0009986 denotes cell surface
T595 216-224 GO:0016020 denotes membrane
T596 242-250 GO:0005576 denotes external
T597 251-270 CHEBI:62488 denotes signaling molecules
T598 288-320 GO:0035556 denotes cascades of intracellular events
T599 300-313 GO:0005622 denotes intracellular
T600 350-354 SO:0000704 denotes gene
T601 350-365 GO:0010467 denotes gene expression
T602 512-525 GO:0009653 denotes morphogenetic
T603 727-736 CHEBI:35224 denotes effectors

2_test

Id Subject Object Predicate Lexical cue
15630473-11841536-84810235 396-397 11841536 denotes 2
T26441 396-397 11841536 denotes 2

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T769 21-30 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T770 31-53 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes communication pathways
T771 64-68 UBERON_EXT:bone_element_or_tissue denotes bone
T772 64-89 PR_EXT:000000034 denotes bone morphogenic proteins
T773 69-80 GO_EXT:0016015 denotes morphogenic
T774 81-89 CHEBI_PR_EXT:protein denotes proteins
T775 91-95 PR_EXT:000000034 denotes BMPs
T776 98-127 PR_EXT:000000046 denotes transforming growth factor βs
T777 111-117 GO_EXT:biological_growth_entity_or_process denotes growth
T778 111-124 GO_EXT:0008083 denotes growth factor
T779 129-135 PR_EXT:000000046 denotes TGF-βs
T780 142-152 CL:0000057 denotes fibroblast
T781 153-159 GO_EXT:biological_growth_entity_or_process denotes growth
T782 153-167 GO_EXT:0008083 denotes growth factors
T783 198-202 CL_GO_EXT:cell denotes cell
T784 198-210 GO:0009986 denotes cell surface
T785 216-224 GO:0016020 denotes membrane
T786 225-234 GO_EXT:0004872 denotes receptors
T787 242-250 GO:0005576 denotes external
T788 251-260 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T789 251-270 CHEBI_EXT:62488 denotes signaling molecules
T790 288-320 GO:0035556 denotes cascades of intracellular events
T791 300-313 GO:0005622 denotes intracellular
T792 305-313 CL_GO_EXT:cell denotes cellular
T793 350-354 SO_EXT:0000704 denotes gene
T794 350-365 GO:0010467 denotes gene expression
T795 367-373 GO_EXT:biological_growth_entity_or_process denotes growth
T796 379-394 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T797 512-525 GO:0009653 denotes morphogenetic
T798 608-617 GO_PATO_EXT:biological_patterning_process_or_quality denotes patterned
T799 727-736 CHEBI_EXT:35224 denotes effectors
T800 773-777 CL_GO_EXT:cell denotes cell

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1128 0-2 IN denotes At
T1129 54-57 VBP denotes are
T1130 3-6 DT denotes the
T1131 7-11 NN denotes helm
T1132 12-14 IN denotes of
T1133 15-20 DT denotes these
T1134 45-53 NNS denotes pathways
T1135 21-30 JJ denotes molecular
T1136 31-44 NN denotes communication
T1137 58-62 NNS denotes Wnts
T1138 62-64 , denotes ,
T1139 64-68 NN denotes bone
T1140 81-89 NN denotes proteins
T1141 69-80 JJ denotes morphogenic
T1142 90-91 -LRB- denotes (
T1143 91-95 NNS denotes BMPs
T1144 95-96 -RRB- denotes )
T1145 96-98 , denotes ,
T1146 98-110 VBG denotes transforming
T1147 125-127 NNS denotes βs
T1148 111-117 NN denotes growth
T1149 118-124 NN denotes factor
T1150 128-129 -LRB- denotes (
T1151 129-132 NN denotes TGF
T1152 133-135 NNS denotes βs
T1153 132-133 HYPH denotes -
T1154 135-136 -RRB- denotes )
T1155 136-138 , denotes ,
T1156 138-141 CC denotes and
T1157 142-152 NN denotes fibroblast
T1158 160-167 NNS denotes factors
T1159 153-159 NN denotes growth
T1160 168-169 -LRB- denotes (
T1161 169-173 NNS denotes FGFs
T1162 173-174 -RRB- denotes )
T1163 174-175 . denotes .
T1164 175-399 sentence denotes Through activation of cell surface transmembrane receptors, these external signaling molecules trigger distinct cascades of intracellular events that culminate in changes in gene expression, growth, and differentiation [2].
T1165 176-183 IN denotes Through
T1166 271-278 VBP denotes trigger
T1167 184-194 NN denotes activation
T1168 195-197 IN denotes of
T1169 198-202 NN denotes cell
T1170 203-210 NN denotes surface
T1171 225-234 NNS denotes receptors
T1172 211-224 NN denotes transmembrane
T1173 234-236 , denotes ,
T1174 236-241 DT denotes these
T1175 261-270 NNS denotes molecules
T1176 242-250 JJ denotes external
T1177 251-260 NN denotes signaling
T1178 279-287 JJ denotes distinct
T1179 288-296 NNS denotes cascades
T1180 297-299 IN denotes of
T1181 300-313 JJ denotes intracellular
T1182 314-320 NNS denotes events
T1183 321-325 WDT denotes that
T1184 326-335 VBP denotes culminate
T1185 336-338 IN denotes in
T1186 339-346 NNS denotes changes
T1187 347-349 IN denotes in
T1188 350-354 NN denotes gene
T1189 355-365 NN denotes expression
T1190 365-367 , denotes ,
T1191 367-373 NN denotes growth
T1192 373-375 , denotes ,
T1193 375-378 CC denotes and
T1194 379-394 NN denotes differentiation
T1195 395-396 -LRB- denotes [
T1196 396-397 CD denotes 2
T1197 397-398 -RRB- denotes ]
T1198 398-399 . denotes .
T1199 399-572 sentence denotes How this constellation of signals collaborates in tailoring each budding process so that it executes a distinct morphogenetic program has yet to be comprehensively defined.
T1200 400-403 WRB denotes How
T1201 434-446 VBZ denotes collaborates
T1202 404-408 DT denotes this
T1203 409-422 NN denotes constellation
T1204 423-425 IN denotes of
T1205 426-433 NNS denotes signals
T1206 534-537 VBZ denotes has
T1207 447-449 IN denotes in
T1208 450-459 VBG denotes tailoring
T1209 460-464 DT denotes each
T1210 473-480 NN denotes process
T1211 465-472 NN denotes budding
T1212 481-483 IN denotes so
T1213 492-500 VBZ denotes executes
T1214 484-488 IN denotes that
T1215 489-491 PRP denotes it
T1216 501-502 DT denotes a
T1217 526-533 NN denotes program
T1218 503-511 JJ denotes distinct
T1219 512-525 JJ denotes morphogenetic
T1220 538-541 RB denotes yet
T1221 564-571 VBN denotes defined
T1222 542-544 TO denotes to
T1223 545-547 VB denotes be
T1224 548-563 RB denotes comprehensively
T1225 571-572 . denotes .
T1226 572-798 sentence denotes However, the process appears to be patterned at the initial stages of bud formation, since the relative importance of these pathways and their downstream effectors differ as buds begin to develop and cell fates are specified.
T1227 573-580 RB denotes However
T1228 594-601 VBZ denotes appears
T1229 580-582 , denotes ,
T1230 582-585 DT denotes the
T1231 586-593 NN denotes process
T1232 602-604 TO denotes to
T1233 608-617 VBN denotes patterned
T1234 605-607 VB denotes be
T1235 618-620 IN denotes at
T1236 621-624 DT denotes the
T1237 633-639 NNS denotes stages
T1238 625-632 JJ denotes initial
T1239 640-642 IN denotes of
T1240 643-646 NN denotes bud
T1241 647-656 NN denotes formation
T1242 656-658 , denotes ,
T1243 658-663 IN denotes since
T1244 737-743 VBP denotes differ
T1245 664-667 DT denotes the
T1246 677-687 NN denotes importance
T1247 668-676 JJ denotes relative
T1248 688-690 IN denotes of
T1249 691-696 DT denotes these
T1250 697-705 NNS denotes pathways
T1251 706-709 CC denotes and
T1252 710-715 PRP$ denotes their
T1253 727-736 NNS denotes effectors
T1254 716-726 JJ denotes downstream
T1255 744-746 IN denotes as
T1256 752-757 VBP denotes begin
T1257 747-751 NNS denotes buds
T1258 758-760 TO denotes to
T1259 761-768 VB denotes develop
T1260 769-772 CC denotes and
T1261 773-777 NN denotes cell
T1262 778-783 NNS denotes fates
T1263 788-797 VBN denotes specified
T1264 784-787 VBP denotes are
T1265 797-798 . denotes .
R328 T1128 T1129 prep At,are
R329 T1130 T1131 det the,helm
R330 T1131 T1128 pobj helm,At
R331 T1132 T1131 prep of,helm
R332 T1133 T1134 det these,pathways
R333 T1134 T1132 pobj pathways,of
R334 T1135 T1136 amod molecular,communication
R335 T1136 T1134 compound communication,pathways
R336 T1137 T1129 nsubj Wnts,are
R337 T1138 T1137 punct ", ",Wnts
R338 T1139 T1140 nmod bone,proteins
R339 T1140 T1137 appos proteins,Wnts
R340 T1141 T1140 amod morphogenic,proteins
R341 T1142 T1140 punct (,proteins
R342 T1143 T1140 appos BMPs,proteins
R343 T1144 T1137 punct ),Wnts
R344 T1145 T1137 punct ", ",Wnts
R345 T1146 T1147 amod transforming,βs
R346 T1147 T1137 appos βs,Wnts
R347 T1148 T1147 compound growth,βs
R348 T1149 T1147 compound factor,βs
R349 T1150 T1147 punct (,βs
R350 T1151 T1152 compound TGF,βs
R351 T1152 T1147 appos βs,βs
R352 T1153 T1152 punct -,βs
R353 T1154 T1137 punct ),Wnts
R354 T1155 T1137 punct ", ",Wnts
R355 T1156 T1137 cc and,Wnts
R356 T1157 T1158 compound fibroblast,factors
R357 T1158 T1137 conj factors,Wnts
R358 T1159 T1158 compound growth,factors
R359 T1160 T1158 punct (,factors
R360 T1161 T1158 appos FGFs,factors
R361 T1162 T1129 punct ),are
R362 T1163 T1129 punct .,are
R363 T1165 T1166 prep Through,trigger
R364 T1167 T1165 pobj activation,Through
R365 T1168 T1167 prep of,activation
R366 T1169 T1170 compound cell,surface
R367 T1170 T1171 compound surface,receptors
R368 T1171 T1168 pobj receptors,of
R369 T1172 T1171 compound transmembrane,receptors
R370 T1173 T1166 punct ", ",trigger
R371 T1174 T1175 det these,molecules
R372 T1175 T1166 nsubj molecules,trigger
R373 T1176 T1175 amod external,molecules
R374 T1177 T1175 compound signaling,molecules
R375 T1178 T1179 amod distinct,cascades
R376 T1179 T1166 dobj cascades,trigger
R377 T1180 T1179 prep of,cascades
R378 T1181 T1182 amod intracellular,events
R379 T1182 T1180 pobj events,of
R380 T1183 T1184 dep that,culminate
R381 T1184 T1179 relcl culminate,cascades
R382 T1185 T1184 prep in,culminate
R383 T1186 T1185 pobj changes,in
R384 T1187 T1186 prep in,changes
R385 T1188 T1189 compound gene,expression
R386 T1189 T1187 pobj expression,in
R387 T1190 T1189 punct ", ",expression
R388 T1191 T1189 conj growth,expression
R389 T1192 T1191 punct ", ",growth
R390 T1193 T1191 cc and,growth
R391 T1194 T1191 conj differentiation,growth
R392 T1195 T1196 punct [,2
R393 T1196 T1166 parataxis 2,trigger
R394 T1197 T1196 punct ],2
R395 T1198 T1166 punct .,trigger
R396 T1200 T1201 advmod How,collaborates
R397 T1201 T1206 csubj collaborates,has
R398 T1202 T1203 det this,constellation
R399 T1203 T1201 nsubj constellation,collaborates
R400 T1204 T1203 prep of,constellation
R401 T1205 T1204 pobj signals,of
R402 T1207 T1201 prep in,collaborates
R403 T1208 T1207 pcomp tailoring,in
R404 T1209 T1210 det each,process
R405 T1210 T1208 dobj process,tailoring
R406 T1211 T1210 compound budding,process
R407 T1212 T1213 mark so,executes
R408 T1213 T1208 advcl executes,tailoring
R409 T1214 T1213 mark that,executes
R410 T1215 T1213 nsubj it,executes
R411 T1216 T1217 det a,program
R412 T1217 T1213 dobj program,executes
R413 T1218 T1217 amod distinct,program
R414 T1219 T1217 amod morphogenetic,program
R415 T1220 T1221 advmod yet,defined
R416 T1221 T1206 xcomp defined,has
R417 T1222 T1221 aux to,defined
R418 T1223 T1221 auxpass be,defined
R419 T1224 T1221 advmod comprehensively,defined
R420 T1225 T1206 punct .,has
R421 T1227 T1228 advmod However,appears
R422 T1229 T1228 punct ", ",appears
R423 T1230 T1231 det the,process
R424 T1231 T1228 nsubj process,appears
R425 T1232 T1233 aux to,patterned
R426 T1233 T1228 xcomp patterned,appears
R427 T1234 T1233 auxpass be,patterned
R428 T1235 T1233 prep at,patterned
R429 T1236 T1237 det the,stages
R430 T1237 T1235 pobj stages,at
R431 T1238 T1237 amod initial,stages
R432 T1239 T1237 prep of,stages
R433 T1240 T1241 compound bud,formation
R434 T1241 T1239 pobj formation,of
R435 T1242 T1228 punct ", ",appears
R436 T1243 T1244 mark since,differ
R437 T1244 T1228 advcl differ,appears
R438 T1245 T1246 det the,importance
R439 T1246 T1244 nsubj importance,differ
R440 T1247 T1246 amod relative,importance
R441 T1248 T1246 prep of,importance
R442 T1249 T1250 det these,pathways
R443 T1250 T1248 pobj pathways,of
R444 T1251 T1250 cc and,pathways
R445 T1252 T1253 poss their,effectors
R446 T1253 T1250 conj effectors,pathways
R447 T1254 T1253 amod downstream,effectors
R448 T1255 T1256 mark as,begin
R449 T1256 T1244 advcl begin,differ
R450 T1257 T1256 nsubj buds,begin
R451 T1258 T1259 aux to,develop
R452 T1259 T1256 xcomp develop,begin
R453 T1260 T1256 cc and,begin
R454 T1261 T1262 compound cell,fates
R455 T1262 T1263 nsubjpass fates,specified
R456 T1263 T1256 conj specified,begin
R457 T1264 T1263 auxpass are,specified
R458 T1265 T1228 punct .,appears