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PMC:529315 / 34576-35397 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19102 20-32 UBERON:0002240 denotes Spinal cords
T19103 47-51 UBERON:0000044 denotes DRGs
T19104 90-95 NCBITaxon:10088 denotes mouse
T19105 96-103 UBERON:0000922 denotes embryos
T19106 152-158 UBERON:0000479 denotes Tissue
T19107 191-197 UBERON:0000479 denotes Tissue
T19108 267-271 PR_EXT:000011459 denotes NT-3
T19109 378-385 UBERON:0009571 denotes midline
T19110 393-404 UBERON:0002240 denotes spinal cord
T19111 456-461 UBERON:0001977 denotes serum
T19112 550-553 CHEBI:16526 denotes CO2
T19113 588-604 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T19114 635-638 CHEBI:52029 denotes DiI
T19115 660-664 UBERON:0000044 denotes DRGs
T19116 724-727 CHEBI_EXT:37958 denotes dye

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T19088 20-32 UBERON:0002240 denotes Spinal cords
T19089 47-51 UBERON:0000044 denotes DRGs
T19090 90-95 NCBITaxon:10088 denotes mouse
T19091 96-103 UBERON:0000922 denotes embryos
T19092 152-158 UBERON:0000479 denotes Tissue
T19093 191-197 UBERON:0000479 denotes Tissue
T19094 267-271 PR:000011459 denotes NT-3
T19095 378-385 UBERON:0009571 denotes midline
T19096 393-404 UBERON:0002240 denotes spinal cord
T19097 456-461 UBERON:0001977 denotes serum
T19098 550-553 CHEBI:16526 denotes CO2
T19099 635-638 CHEBI:52029 denotes DiI
T19100 660-664 UBERON:0000044 denotes DRGs
T19101 724-727 CHEBI:37958 denotes dye

craft-sa-dev

Id Subject Object Predicate Lexical cue
T19117 0-7 NN denotes Explant
T19118 8-19 NNS denotes co-cultures
T19119 19-151 sentence denotes Spinal cords with attached DRGs were dissected out from Swiss Webster mouse embryos at E13, and sectioned into 300-μm-thick slices.
T19120 20-26 JJ denotes Spinal
T19121 27-32 NNS denotes cords
T19122 57-66 VBN denotes dissected
T19123 33-37 IN denotes with
T19124 38-46 VBN denotes attached
T19125 47-51 NNS denotes DRGs
T19126 52-56 VBD denotes were
T19127 67-70 RP denotes out
T19128 71-75 IN denotes from
T19129 76-81 NNP denotes Swiss
T19130 82-89 NNP denotes Webster
T19131 96-103 NNS denotes embryos
T19132 90-95 NN denotes mouse
T19133 104-106 IN denotes at
T19134 107-110 NN denotes E13
T19135 110-112 , denotes ,
T19136 112-115 CC denotes and
T19137 116-125 VBN denotes sectioned
T19138 126-130 IN denotes into
T19139 131-134 CD denotes 300
T19140 135-137 NN denotes μm
T19141 134-135 HYPH denotes -
T19142 138-143 JJ denotes thick
T19143 137-138 HYPH denotes -
T19144 144-150 NNS denotes slices
T19145 150-151 . denotes .
T19146 151-266 sentence denotes Tissue slices were placed on Millicell Tissue Culture Inserts (Millipore, Billrica, Massachusetts, United States).
T19147 152-158 NN denotes Tissue
T19148 159-165 NNS denotes slices
T19149 171-177 VBN denotes placed
T19150 166-170 VBD denotes were
T19151 178-180 IN denotes on
T19152 181-190 NN denotes Millicell
T19153 206-213 NNS denotes Inserts
T19154 191-197 NN denotes Tissue
T19155 198-205 NN denotes Culture
T19156 214-215 -LRB- denotes (
T19157 215-224 NNP denotes Millipore
T19158 224-226 , denotes ,
T19159 226-234 NNP denotes Billrica
T19160 234-236 , denotes ,
T19161 236-249 NNP denotes Massachusetts
T19162 249-251 , denotes ,
T19163 251-257 NNP denotes United
T19164 258-264 NNP denotes States
T19165 264-265 -RRB- denotes )
T19166 265-266 . denotes .
T19167 266-411 sentence denotes NT-3-loaded (n = 15) or PBS-loaded (n = 6) sepharose beads were prepared as described above, and placed in the midline at mid-spinal cord level.
T19168 267-269 NN denotes NT
T19169 272-278 VBN denotes loaded
T19170 269-270 HYPH denotes -
T19171 270-271 CD denotes 3
T19172 271-272 HYPH denotes -
T19173 320-325 NNS denotes beads
T19174 279-280 -LRB- denotes (
T19175 284-286 CD denotes 15
T19176 280-281 NN denotes n
T19177 282-283 SYM denotes =
T19178 286-287 -RRB- denotes )
T19179 288-290 CC denotes or
T19180 291-294 NN denotes PBS
T19181 295-301 VBN denotes loaded
T19182 294-295 HYPH denotes -
T19183 302-303 -LRB- denotes (
T19184 307-308 CD denotes 6
T19185 303-304 NN denotes n
T19186 305-306 SYM denotes =
T19187 308-309 -RRB- denotes )
T19188 310-319 NN denotes sepharose
T19189 331-339 VBN denotes prepared
T19190 326-330 VBD denotes were
T19191 340-342 IN denotes as
T19192 343-352 VBN denotes described
T19193 353-358 RB denotes above
T19194 358-360 , denotes ,
T19195 360-363 CC denotes and
T19196 364-370 VBN denotes placed
T19197 371-373 IN denotes in
T19198 374-377 DT denotes the
T19199 378-385 NN denotes midline
T19200 386-388 IN denotes at
T19201 389-399 JJ denotes mid-spinal
T19202 400-404 NN denotes cord
T19203 405-410 NN denotes level
T19204 410-411 . denotes .
T19205 411-554 sentence denotes Inserts were placed in six-well plates with serum-free medium at the bottom of the wells, and kept at 33 °C for 3 d in the presence of 5% CO2.
T19206 412-419 NNS denotes Inserts
T19207 425-431 VBN denotes placed
T19208 420-424 VBD denotes were
T19209 432-434 IN denotes in
T19210 435-438 CD denotes six
T19211 439-443 NN denotes well
T19212 438-439 HYPH denotes -
T19213 444-450 NNS denotes plates
T19214 451-455 IN denotes with
T19215 456-461 NN denotes serum
T19216 462-466 JJ denotes free
T19217 461-462 HYPH denotes -
T19218 467-473 NN denotes medium
T19219 474-476 IN denotes at
T19220 477-480 DT denotes the
T19221 481-487 NN denotes bottom
T19222 488-490 IN denotes of
T19223 491-494 DT denotes the
T19224 495-500 NNS denotes wells
T19225 500-502 , denotes ,
T19226 502-505 CC denotes and
T19227 506-510 VBD denotes kept
T19228 511-513 IN denotes at
T19229 514-516 CD denotes 33
T19230 517-519 NN denotes °C
T19231 520-523 IN denotes for
T19232 524-525 CD denotes 3
T19233 526-527 NN denotes d
T19234 528-530 IN denotes in
T19235 531-534 DT denotes the
T19236 535-543 NN denotes presence
T19237 544-546 IN denotes of
T19238 547-548 CD denotes 5
T19239 548-549 NN denotes %
T19240 550-553 NN denotes CO2
T19241 553-554 . denotes .
T19242 554-665 sentence denotes Cultures were then fixed with 4% paraformaldehyde in PBS, and small crystals of DiI were placed into the DRGs.
T19243 555-563 NNS denotes Cultures
T19244 574-579 VBN denotes fixed
T19245 564-568 VBD denotes were
T19246 569-573 RB denotes then
T19247 580-584 IN denotes with
T19248 585-586 CD denotes 4
T19249 586-587 NN denotes %
T19250 588-604 NN denotes paraformaldehyde
T19251 605-607 IN denotes in
T19252 608-611 NN denotes PBS
T19253 611-613 , denotes ,
T19254 613-616 CC denotes and
T19255 617-622 JJ denotes small
T19256 623-631 NNS denotes crystals
T19257 644-650 VBN denotes placed
T19258 632-634 IN denotes of
T19259 635-638 NN denotes DiI
T19260 639-643 VBD denotes were
T19261 651-655 IN denotes into
T19262 656-659 DT denotes the
T19263 660-664 NNS denotes DRGs
T19264 664-665 . denotes .
T19265 665-821 sentence denotes Samples were incubated in a 37-°C incubator, allowing the dye to diffuse, and photographed under a Nikon (Tokyo, Japan) inverted epifluoresence microscope.
T19266 666-673 NNS denotes Samples
T19267 679-688 VBN denotes incubated
T19268 674-678 VBD denotes were
T19269 689-691 IN denotes in
T19270 692-693 DT denotes a
T19271 700-709 NN denotes incubator
T19272 694-696 CD denotes 37
T19273 697-699 NN denotes °C
T19274 696-697 HYPH denotes -
T19275 709-711 , denotes ,
T19276 711-719 VBG denotes allowing
T19277 720-723 DT denotes the
T19278 724-727 NN denotes dye
T19279 731-738 VB denotes diffuse
T19280 728-730 TO denotes to
T19281 738-740 , denotes ,
T19282 740-743 CC denotes and
T19283 744-756 VBN denotes photographed
T19284 757-762 IN denotes under
T19285 763-764 DT denotes a
T19286 810-820 NN denotes microscope
T19287 765-770 NNP denotes Nikon
T19288 771-772 -LRB- denotes (
T19289 772-777 NNP denotes Tokyo
T19290 777-779 , denotes ,
T19291 779-784 NNP denotes Japan
T19292 784-785 -RRB- denotes )
T19293 786-794 JJ denotes inverted
T19294 795-809 NN denotes epifluoresence
T19295 820-821 . denotes .
R5634 T19117 T19118 compound Explant,co-cultures
R5635 T19120 T19121 amod Spinal,cords
R5636 T19121 T19122 nsubjpass cords,dissected
R5637 T19123 T19121 prep with,cords
R5638 T19124 T19125 amod attached,DRGs
R5639 T19125 T19123 pobj DRGs,with
R5640 T19126 T19122 auxpass were,dissected
R5641 T19127 T19122 prt out,dissected
R5642 T19128 T19122 prep from,dissected
R5643 T19129 T19130 compound Swiss,Webster
R5644 T19130 T19131 compound Webster,embryos
R5645 T19131 T19128 pobj embryos,from
R5646 T19132 T19131 compound mouse,embryos
R5647 T19133 T19131 prep at,embryos
R5648 T19134 T19133 pobj E13,at
R5649 T19135 T19122 punct ", ",dissected
R5650 T19136 T19122 cc and,dissected
R5651 T19137 T19122 conj sectioned,dissected
R5652 T19138 T19137 prep into,sectioned
R5653 T19139 T19140 nummod 300,μm
R5654 T19140 T19142 npadvmod μm,thick
R5655 T19141 T19140 punct -,μm
R5656 T19142 T19144 amod thick,slices
R5657 T19143 T19142 punct -,thick
R5658 T19144 T19138 pobj slices,into
R5659 T19145 T19122 punct .,dissected
R5660 T19147 T19148 compound Tissue,slices
R5661 T19148 T19149 nsubjpass slices,placed
R5662 T19150 T19149 auxpass were,placed
R5663 T19151 T19149 prep on,placed
R5664 T19152 T19153 compound Millicell,Inserts
R5665 T19153 T19151 pobj Inserts,on
R5666 T19154 T19155 compound Tissue,Culture
R5667 T19155 T19153 compound Culture,Inserts
R5668 T19156 T19157 punct (,Millipore
R5669 T19157 T19153 parataxis Millipore,Inserts
R5670 T19158 T19157 punct ", ",Millipore
R5671 T19159 T19157 npadvmod Billrica,Millipore
R5672 T19160 T19157 punct ", ",Millipore
R5673 T19161 T19157 npadvmod Massachusetts,Millipore
R5674 T19162 T19157 punct ", ",Millipore
R5675 T19163 T19164 compound United,States
R5676 T19164 T19157 npadvmod States,Millipore
R5677 T19165 T19157 punct ),Millipore
R5678 T19166 T19149 punct .,placed
R5679 T19168 T19169 npadvmod NT,loaded
R5680 T19169 T19173 amod loaded,beads
R5681 T19170 T19168 punct -,NT
R5682 T19171 T19168 nummod 3,NT
R5683 T19172 T19169 punct -,loaded
R5684 T19173 T19189 nsubjpass beads,prepared
R5685 T19174 T19175 punct (,15
R5686 T19175 T19169 parataxis 15,loaded
R5687 T19176 T19175 nsubj n,15
R5688 T19177 T19175 punct =,15
R5689 T19178 T19175 punct ),15
R5690 T19179 T19169 cc or,loaded
R5691 T19180 T19181 npadvmod PBS,loaded
R5692 T19181 T19169 conj loaded,loaded
R5693 T19182 T19181 punct -,loaded
R5694 T19183 T19184 punct (,6
R5695 T19184 T19181 parataxis 6,loaded
R5696 T19185 T19184 nsubj n,6
R5697 T19186 T19184 punct =,6
R5698 T19187 T19184 punct ),6
R5699 T19188 T19173 compound sepharose,beads
R5700 T19190 T19189 auxpass were,prepared
R5701 T19191 T19192 mark as,described
R5702 T19192 T19189 advcl described,prepared
R5703 T19193 T19192 advmod above,described
R5704 T19194 T19189 punct ", ",prepared
R5705 T19195 T19189 cc and,prepared
R5706 T19196 T19189 conj placed,prepared
R5707 T19197 T19196 prep in,placed
R5708 T19198 T19199 det the,midline
R5709 T19199 T19197 pobj midline,in
R5710 T19200 T19196 prep at,placed
R5711 T19201 T19202 amod mid-spinal,cord
R5712 T19202 T19203 compound cord,level
R5713 T19203 T19200 pobj level,at
R5714 T19204 T19189 punct .,prepared
R5715 T19206 T19207 nsubjpass Inserts,placed
R5716 T19208 T19207 auxpass were,placed
R5717 T19209 T19207 prep in,placed
R5718 T19210 T19211 nummod six,well
R5719 T19211 T19213 compound well,plates
R5720 T19212 T19211 punct -,well
R5721 T19213 T19209 pobj plates,in
R5722 T19214 T19207 prep with,placed
R5723 T19215 T19216 npadvmod serum,free
R5724 T19216 T19218 amod free,medium
R5725 T19217 T19216 punct -,free
R5726 T19218 T19214 pobj medium,with
R5727 T19219 T19218 prep at,medium
R5728 T19220 T19221 det the,bottom
R5729 T19221 T19219 pobj bottom,at
R5730 T19222 T19221 prep of,bottom
R5731 T19223 T19224 det the,wells
R5732 T19224 T19222 pobj wells,of
R5733 T19225 T19207 punct ", ",placed
R5734 T19226 T19207 cc and,placed
R5735 T19227 T19207 conj kept,placed
R5736 T19228 T19227 prep at,kept
R5737 T19229 T19230 nummod 33,°C
R5738 T19230 T19228 pobj °C,at
R5739 T19231 T19227 prep for,kept
R5740 T19232 T19233 nummod 3,d
R5741 T19233 T19231 pobj d,for
R5742 T19234 T19227 prep in,kept
R5743 T19235 T19236 det the,presence
R5744 T19236 T19234 pobj presence,in
R5745 T19237 T19236 prep of,presence
R5746 T19238 T19239 nummod 5,%
R5747 T19239 T19240 compound %,CO2
R5748 T19240 T19237 pobj CO2,of
R5749 T19241 T19207 punct .,placed
R5750 T19243 T19244 nsubjpass Cultures,fixed
R5751 T19245 T19244 auxpass were,fixed
R5752 T19246 T19244 advmod then,fixed
R5753 T19247 T19244 prep with,fixed
R5754 T19248 T19249 nummod 4,%
R5755 T19249 T19250 compound %,paraformaldehyde
R5756 T19250 T19247 pobj paraformaldehyde,with
R5757 T19251 T19244 prep in,fixed
R5758 T19252 T19251 pobj PBS,in
R5759 T19253 T19244 punct ", ",fixed
R5760 T19254 T19244 cc and,fixed
R5761 T19255 T19256 amod small,crystals
R5762 T19256 T19257 nsubjpass crystals,placed
R5763 T19257 T19244 conj placed,fixed
R5764 T19258 T19256 prep of,crystals
R5765 T19259 T19258 pobj DiI,of
R5766 T19260 T19257 auxpass were,placed
R5767 T19261 T19257 prep into,placed
R5768 T19262 T19263 det the,DRGs
R5769 T19263 T19261 pobj DRGs,into
R5770 T19264 T19257 punct .,placed
R5771 T19266 T19267 nsubjpass Samples,incubated
R5772 T19268 T19267 auxpass were,incubated
R5773 T19269 T19267 prep in,incubated
R5774 T19270 T19271 det a,incubator
R5775 T19271 T19269 pobj incubator,in
R5776 T19272 T19273 nummod 37,°C
R5777 T19273 T19271 compound °C,incubator
R5778 T19274 T19273 punct -,°C
R5779 T19275 T19267 punct ", ",incubated
R5780 T19276 T19267 advcl allowing,incubated
R5781 T19277 T19278 det the,dye
R5782 T19278 T19279 nsubj dye,diffuse
R5783 T19279 T19276 ccomp diffuse,allowing
R5784 T19280 T19279 aux to,diffuse
R5785 T19281 T19267 punct ", ",incubated
R5786 T19282 T19267 cc and,incubated
R5787 T19283 T19267 conj photographed,incubated
R5788 T19284 T19283 prep under,photographed
R5789 T19285 T19286 det a,microscope
R5790 T19286 T19284 pobj microscope,under
R5791 T19287 T19286 nmod Nikon,microscope
R5792 T19288 T19289 punct (,Tokyo
R5793 T19289 T19287 parataxis Tokyo,Nikon
R5794 T19290 T19289 punct ", ",Tokyo
R5795 T19291 T19289 npadvmod Japan,Tokyo
R5796 T19292 T19289 punct ),Tokyo
R5797 T19293 T19294 amod inverted,epifluoresence
R5798 T19294 T19286 compound epifluoresence,microscope
R5799 T19295 T19267 punct .,incubated