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PMC:523229 / 8830-9178 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2740 4-10 IN denotes during
T2741 11-20 JJ denotes embryonic
T2742 27-36 NN denotes formation
T2743 21-26 NN denotes joint
T2744 36-37 . denotes .
T2745 37-324 sentence denotes A bacterial artificial chromosome (BAC) containing the Gdf5 locus was modified by homologous recombination in bacteria to insert a cassette encoding Cre-internal ribosome entry site (IRES)-human placental alkaline phosphatase (hPLAP) into the translation start site of Gdf5 (Figure 1A).
T2746 38-39 DT denotes A
T2747 61-71 NN denotes chromosome
T2748 40-49 JJ denotes bacterial
T2749 50-60 JJ denotes artificial
T2750 108-116 VBN denotes modified
T2751 72-73 -LRB- denotes (
T2752 73-76 NN denotes BAC
T2753 76-77 -RRB- denotes )
T2754 78-88 VBG denotes containing
T2755 89-92 DT denotes the
T2756 98-103 NN denotes locus
T2757 93-97 NN denotes Gdf5
T2758 104-107 VBD denotes was
T2759 117-119 IN denotes by
T2760 120-130 JJ denotes homologous
T2761 131-144 NN denotes recombination
T2762 145-147 IN denotes in
T2763 148-156 NNS denotes bacteria
T2764 157-159 TO denotes to
T2765 160-166 VB denotes insert
T2766 167-168 DT denotes a
T2767 169-177 NN denotes cassette
T2768 178-186 VBG denotes encoding
T2769 187-190 NN denotes Cre
T2770 252-263 NN denotes phosphatase
T2771 190-191 HYPH denotes -
T2772 191-199 JJ denotes internal
T2773 209-214 NN denotes entry
T2774 200-208 NN denotes ribosome
T2775 215-219 NN denotes site
T2776 220-221 -LRB- denotes (
T2777 221-225 NN denotes IRES
T2778 225-226 -RRB- denotes )
T2779 226-227 HYPH denotes -
T2780 227-232 JJ denotes human
T2781 233-242 JJ denotes placental
T2782 243-251 NN denotes alkaline
T2783 264-265 -LRB- denotes (
T2784 265-270 NN denotes hPLAP
T2785 270-271 -RRB- denotes )
T2786 272-276 IN denotes into
T2787 277-280 DT denotes the
T2788 299-303 NN denotes site
T2789 281-292 NN denotes translation
T2790 293-298 NN denotes start
T2791 304-306 IN denotes of
T2792 307-311 NN denotes Gdf5
T2793 312-313 -LRB- denotes (
T2794 313-319 NN denotes Figure
T2795 320-322 CD denotes 1A
T2796 322-323 -RRB- denotes )
T2797 323-324 . denotes .
T2799 325-329 DT denotes This
T2800 339-342 NN denotes BAC
T2801 330-338 VBN denotes modified
T2803 343-346 VBD denotes was
R1481 T2741 T2742 amod embryonic,formation
R1482 T2742 T2740 pobj formation,during
R1483 T2743 T2742 compound joint,formation
R1485 T2746 T2747 det A,chromosome
R1486 T2747 T2750 nsubjpass chromosome,modified
R1487 T2748 T2749 amod bacterial,artificial
R1488 T2749 T2747 amod artificial,chromosome
R1489 T2751 T2747 punct (,chromosome
R1490 T2752 T2747 appos BAC,chromosome
R1491 T2753 T2747 punct ),chromosome
R1492 T2754 T2747 acl containing,chromosome
R1493 T2755 T2756 det the,locus
R1494 T2756 T2754 dobj locus,containing
R1495 T2757 T2756 compound Gdf5,locus
R1496 T2758 T2750 auxpass was,modified
R1497 T2759 T2750 prep by,modified
R1498 T2760 T2761 amod homologous,recombination
R1499 T2761 T2759 pobj recombination,by
R1500 T2762 T2750 prep in,modified
R1501 T2763 T2762 pobj bacteria,in
R1502 T2764 T2765 aux to,insert
R1503 T2765 T2750 advcl insert,modified
R1504 T2766 T2767 det a,cassette
R1505 T2767 T2765 dobj cassette,insert
R1506 T2768 T2767 acl encoding,cassette
R1507 T2769 T2770 nmod Cre,phosphatase
R1508 T2770 T2768 dobj phosphatase,encoding
R1509 T2771 T2770 punct -,phosphatase
R1510 T2772 T2773 amod internal,entry
R1511 T2773 T2775 nmod entry,site
R1512 T2774 T2773 nmod ribosome,entry
R1513 T2775 T2770 nmod site,phosphatase
R1514 T2776 T2775 punct (,site
R1515 T2777 T2775 appos IRES,site
R1516 T2778 T2775 punct ),site
R1517 T2779 T2770 punct -,phosphatase
R1518 T2780 T2781 amod human,placental
R1519 T2781 T2770 amod placental,phosphatase
R1520 T2782 T2770 compound alkaline,phosphatase
R1521 T2783 T2770 punct (,phosphatase
R1522 T2784 T2770 appos hPLAP,phosphatase
R1523 T2785 T2770 punct ),phosphatase
R1524 T2786 T2765 prep into,insert
R1525 T2787 T2788 det the,site
R1526 T2788 T2786 pobj site,into
R1527 T2789 T2788 compound translation,site
R1528 T2790 T2788 compound start,site
R1529 T2791 T2788 prep of,site
R1530 T2792 T2791 pobj Gdf5,of
R1531 T2793 T2794 punct (,Figure
R1532 T2794 T2765 parataxis Figure,insert
R1533 T2795 T2794 nummod 1A,Figure
R1534 T2796 T2794 punct ),Figure
R1535 T2797 T2750 punct .,modified
R1536 T2799 T2800 det This,BAC
R1538 T2801 T2800 amod modified,BAC

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T2497 11-20 UBERON:0000922 denotes embryonic
T2499 11-20,27-36 GO:0009790 denotes embryonic formation
T2500 21-26 UBERON:0004905 denotes joint
T2501 40-49 NCBITaxon:2 denotes bacterial
T2502 40-71 SO_EXT:0000153 denotes bacterial artificial chromosome
T2503 61-71 GO_SO_EXT:chromosome denotes chromosome
T2504 73-76 SO_EXT:0000153 denotes BAC
T2505 93-97 PR_EXT:000000281 denotes Gdf5
T2506 108-116 SO_EXT:sequence_alteration_process denotes modified
T2507 131-144 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T2508 148-156 NCBITaxon:2 denotes bacteria
T2509 160-166 SO_EXT:sequence_insertion_process denotes insert
T2510 169-177 SO_EXT:0005853 denotes cassette
T2511 178-186 SO_EXT:sequence_coding_function denotes encoding
T2512 191-219 SO_EXT:0000243 denotes internal ribosome entry site
T2513 200-208 GO:0005840 denotes ribosome
T2514 221-225 SO_EXT:0000243 denotes IRES
T2515 227-232 NCBITaxon:9606 denotes human
T2516 233-242 UBERON:0001987 denotes placental
T2517 233-263 PR_EXT:000003969 denotes placental alkaline phosphatase
T2518 243-263 GO_PR_EXT:alkaline_phosphatase denotes alkaline phosphatase
T2519 265-270 PR_EXT:P05187 denotes hPLAP
T2520 281-298 GO:0006413 denotes translation start
T2521 281-303 SO_EXT:0000318 denotes translation start site
T2522 307-311 PR_EXT:000000281 denotes Gdf5
T2523 330-338 SO_EXT:sequence_alteration_process denotes modified
T2524 339-342 SO_EXT:0000153 denotes BAC

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T2327 11-20 UBERON:0000922 denotes embryonic
T2329 11-20,27-36 GO:0009790 denotes embryonic formation
T2330 21-26 UBERON:0004905 denotes joint
T2331 40-49 NCBITaxon:2 denotes bacterial
T2332 40-71 SO:0000153 denotes bacterial artificial chromosome
T2333 73-76 SO:0000153 denotes BAC
T2334 93-97 PR:000000281 denotes Gdf5
T2335 148-156 NCBITaxon:2 denotes bacteria
T2336 169-177 SO:0005853 denotes cassette
T2337 191-219 SO:0000243 denotes internal ribosome entry site
T2338 200-208 GO:0005840 denotes ribosome
T2339 221-225 SO:0000243 denotes IRES
T2340 227-232 NCBITaxon:9606 denotes human
T2341 233-242 UBERON:0001987 denotes placental
T2342 233-263 PR:000003969 denotes placental alkaline phosphatase
T2343 265-270 PR:P05187 denotes hPLAP
T2344 281-298 GO:0006413 denotes translation start
T2345 281-303 SO:0000318 denotes translation start site
T2346 307-311 PR:000000281 denotes Gdf5
T2347 339-342 SO:0000153 denotes BAC