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PMC:523229 / 44773-46595 JSONTXT

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Id Subject Object Predicate Lexical cue
T10008 0-2 PRP denotes It
T10009 3-5 VBZ denotes is
T10010 6-17 JJ denotes interesting
T10011 18-22 IN denotes that
T10012 53-62 VBZ denotes continues
T10013 23-26 DT denotes the
T10014 46-52 NN denotes factor
T10015 27-31 NN denotes SOX9
T10016 32-45 NN denotes transcription
T10017 63-65 TO denotes to
T10018 69-78 VBN denotes expressed
T10019 66-68 VB denotes be
T10020 79-81 IN denotes in
T10021 82-88 NN denotes mutant
T10022 89-98 NN denotes cartilage
T10023 99-106 IN denotes despite
T10024 107-111 NN denotes loss
T10025 112-114 IN denotes of
T10026 115-121 NN denotes Col2a1
T10027 121-123 , denotes ,
T10028 123-124 DT denotes a
T10029 132-138 NN denotes target
T10030 125-131 JJ denotes direct
T10031 139-141 IN denotes of
T10032 142-146 DT denotes this
T10033 161-167 NN denotes factor
T10034 147-160 NN denotes transcription
T10035 168-169 -LRB- denotes (
T10036 169-173 NNP denotes Bell
T10037 174-176 FW denotes et
T10038 177-180 FW denotes al.
T10039 181-185 CD denotes 1997
T10040 185-186 : denotes ;
T10041 187-195 NNP denotes Lefebvre
T10042 196-198 FW denotes et
T10043 199-202 FW denotes al.
T10044 203-207 CD denotes 1997
T10045 207-208 -RRB- denotes )
T10046 208-209 . denotes .
T10047 209-433 sentence denotes Previous studies suggest that SOX9 activity can be modified by protein kinase A (PKA)-dependent protein phosphorylation, or by coexpression of two related proteins, L-SOX5 and SOX6 (Lefebvre et al. 1998; Huang et al. 2000).
T10048 210-218 JJ denotes Previous
T10049 219-226 NNS denotes studies
T10050 227-234 VBP denotes suggest
T10051 235-239 IN denotes that
T10052 261-269 VBN denotes modified
T10053 240-244 NN denotes SOX9
T10054 245-253 NN denotes activity
T10055 254-257 MD denotes can
T10056 258-260 VB denotes be
T10057 270-272 IN denotes by
T10058 273-280 NN denotes protein
T10059 288-289 NN denotes A
T10060 281-287 NN denotes kinase
T10061 296-305 JJ denotes dependent
T10062 290-291 -LRB- denotes (
T10063 291-294 NN denotes PKA
T10064 294-295 -RRB- denotes )
T10065 295-296 HYPH denotes -
T10066 314-329 NN denotes phosphorylation
T10067 306-313 NN denotes protein
T10068 329-331 , denotes ,
T10069 331-333 CC denotes or
T10070 334-336 IN denotes by
T10071 337-349 NN denotes coexpression
T10072 350-352 IN denotes of
T10073 353-356 CD denotes two
T10074 365-373 NN denotes proteins
T10075 357-364 VBN denotes related
T10076 373-375 , denotes ,
T10077 375-376 NN denotes L
T10078 377-381 NN denotes SOX5
T10079 376-377 HYPH denotes -
T10080 382-385 CC denotes and
T10081 386-390 NN denotes SOX6
T10082 391-392 -LRB- denotes (
T10083 392-400 NNP denotes Lefebvre
T10084 401-403 FW denotes et
T10085 404-407 FW denotes al.
T10086 408-412 CD denotes 1998
T10087 412-413 : denotes ;
T10088 414-419 NNP denotes Huang
T10089 420-422 FW denotes et
T10090 423-426 FW denotes al.
T10091 427-431 CD denotes 2000
T10092 431-432 -RRB- denotes )
T10093 432-433 . denotes .
T10094 433-696 sentence denotes In addition, close examination of the order of genes induced during chicken digit formation reveals that Sox9 turns on first, followed by Bmpr1b with L-Sox5, and then Sox6 and the cartilage matrix structural components Col2a1 and Agg (Chimal-Monroy et al. 2003).
T10095 434-436 IN denotes In
T10096 526-533 VBZ denotes reveals
T10097 437-445 NN denotes addition
T10098 445-447 , denotes ,
T10099 447-452 JJ denotes close
T10100 453-464 NN denotes examination
T10101 465-467 IN denotes of
T10102 468-471 DT denotes the
T10103 472-477 NN denotes order
T10104 478-480 IN denotes of
T10105 481-486 NNS denotes genes
T10106 487-494 VBN denotes induced
T10107 495-501 IN denotes during
T10108 502-509 NN denotes chicken
T10109 516-525 NN denotes formation
T10110 510-515 NN denotes digit
T10111 534-538 IN denotes that
T10112 544-549 VBZ denotes turns
T10113 539-543 NN denotes Sox9
T10114 550-552 RP denotes on
T10115 553-558 RB denotes first
T10116 558-560 , denotes ,
T10117 560-568 VBN denotes followed
T10118 569-571 IN denotes by
T10119 572-578 NN denotes Bmpr1b
T10120 579-583 IN denotes with
T10121 584-585 NN denotes L
T10122 586-590 NN denotes Sox5
T10123 585-586 HYPH denotes -
T10124 590-592 , denotes ,
T10125 592-595 CC denotes and
T10126 596-600 RB denotes then
T10127 601-605 NN denotes Sox6
T10128 606-609 CC denotes and
T10129 610-613 DT denotes the
T10130 642-652 NNS denotes components
T10131 614-623 NN denotes cartilage
T10132 624-630 NN denotes matrix
T10133 631-641 JJ denotes structural
T10134 653-659 NN denotes Col2a1
T10135 660-663 CC denotes and
T10136 664-667 NN denotes Agg
T10137 668-669 -LRB- denotes (
T10138 669-675 NNP denotes Chimal
T10139 675-676 HYPH denotes -
T10140 676-682 NNP denotes Monroy
T10141 683-685 FW denotes et
T10142 686-689 FW denotes al.
T10143 690-694 CD denotes 2003
T10144 694-695 -RRB- denotes )
T10145 695-696 . denotes .
T10146 696-991 sentence denotes These results, together with the altered pattern of gene expression seen in our Bmpr1a-deficient mice, suggest that BMPR1A signaling may normally act to stimulate SOX9 by post-translational protein modification, or to induce L-Sox5 or Sox6 in cartilage to maintain expression of ECM components.
T10147 697-702 DT denotes These
T10148 703-710 NNS denotes results
T10149 800-807 VBP denotes suggest
T10150 710-712 , denotes ,
T10151 712-720 RB denotes together
T10152 721-725 IN denotes with
T10153 726-729 DT denotes the
T10154 738-745 NN denotes pattern
T10155 730-737 VBN denotes altered
T10156 746-748 IN denotes of
T10157 749-753 NN denotes gene
T10158 754-764 NN denotes expression
T10159 765-769 VBN denotes seen
T10160 770-772 IN denotes in
T10161 773-776 PRP$ denotes our
T10162 794-798 NNS denotes mice
T10163 777-783 NN denotes Bmpr1a
T10164 784-793 JJ denotes deficient
T10165 783-784 HYPH denotes -
T10166 798-800 , denotes ,
T10167 808-812 IN denotes that
T10168 843-846 VB denotes act
T10169 813-819 NN denotes BMPR1A
T10170 820-829 NN denotes signaling
T10171 830-833 MD denotes may
T10172 834-842 RB denotes normally
T10173 847-849 TO denotes to
T10174 850-859 VB denotes stimulate
T10175 860-864 NN denotes SOX9
T10176 865-867 IN denotes by
T10177 868-886 JJ denotes post-translational
T10178 895-907 NN denotes modification
T10179 887-894 NN denotes protein
T10180 907-909 , denotes ,
T10181 909-911 CC denotes or
T10182 912-914 TO denotes to
T10183 915-921 VB denotes induce
T10184 922-923 NN denotes L
T10185 924-928 NN denotes Sox5
T10186 923-924 HYPH denotes -
T10187 929-931 CC denotes or
T10188 932-936 NN denotes Sox6
T10189 937-939 IN denotes in
T10190 940-949 NN denotes cartilage
T10191 950-952 TO denotes to
T10192 953-961 VB denotes maintain
T10193 962-972 NN denotes expression
T10194 973-975 IN denotes of
T10195 976-979 NN denotes ECM
T10196 980-990 NNS denotes components
T10197 990-991 . denotes .
T10198 991-1181 sentence denotes These models are consistent with the ability of BMP2 to both increase PKA activity and induce expression of Sox6 in tissue culture cells (Lee and Chuong 1997; Fernandez-Lloris et al. 2003).
T10199 992-997 DT denotes These
T10200 998-1004 NNS denotes models
T10201 1005-1008 VBP denotes are
T10202 1009-1019 JJ denotes consistent
T10203 1020-1024 IN denotes with
T10204 1025-1028 DT denotes the
T10205 1029-1036 NN denotes ability
T10206 1037-1039 IN denotes of
T10207 1040-1044 NN denotes BMP2
T10208 1045-1047 TO denotes to
T10209 1053-1061 VB denotes increase
T10210 1048-1052 CC denotes both
T10211 1062-1065 NN denotes PKA
T10212 1066-1074 NN denotes activity
T10213 1075-1078 CC denotes and
T10214 1079-1085 VB denotes induce
T10215 1086-1096 NN denotes expression
T10216 1097-1099 IN denotes of
T10217 1100-1104 NN denotes Sox6
T10218 1105-1107 IN denotes in
T10219 1108-1114 NN denotes tissue
T10220 1123-1128 NNS denotes cells
T10221 1115-1122 NN denotes culture
T10222 1129-1130 -LRB- denotes (
T10223 1130-1133 NNP denotes Lee
T10224 1134-1137 CC denotes and
T10225 1138-1144 NNP denotes Chuong
T10226 1145-1149 CD denotes 1997
T10227 1149-1150 : denotes ;
T10228 1151-1160 NNP denotes Fernandez
T10229 1160-1161 HYPH denotes -
T10230 1161-1167 NNP denotes Lloris
T10231 1168-1170 FW denotes et
T10232 1171-1174 FW denotes al.
T10233 1175-1179 CD denotes 2003
T10234 1179-1180 -RRB- denotes )
T10235 1180-1181 . denotes .
T10236 1181-1508 sentence denotes Although we have tried to monitor the expression of L-Sox5 or Sox6 in postnatal articular cartilage, and test the phosphorylation state of SOX9 using previously described reagents (Lefebvre et al. 1998; Huang et al. 2000), we have been unable to obtain specific signal at the late postnatal stages required (unpublished data).
T10237 1182-1190 IN denotes Although
T10238 1199-1204 VBN denotes tried
T10239 1191-1193 PRP denotes we
T10240 1194-1198 VBP denotes have
T10241 1413-1417 VBN denotes been
T10242 1205-1207 TO denotes to
T10243 1208-1215 VB denotes monitor
T10244 1216-1219 DT denotes the
T10245 1220-1230 NN denotes expression
T10246 1231-1233 IN denotes of
T10247 1234-1235 NN denotes L
T10248 1236-1240 NN denotes Sox5
T10249 1235-1236 HYPH denotes -
T10250 1241-1243 CC denotes or
T10251 1244-1248 NN denotes Sox6
T10252 1249-1251 IN denotes in
T10253 1252-1261 JJ denotes postnatal
T10254 1272-1281 NN denotes cartilage
T10255 1262-1271 JJ denotes articular
T10256 1281-1283 , denotes ,
T10257 1283-1286 CC denotes and
T10258 1287-1291 VB denotes test
T10259 1292-1295 DT denotes the
T10260 1312-1317 NN denotes state
T10261 1296-1311 NN denotes phosphorylation
T10262 1318-1320 IN denotes of
T10263 1321-1325 NN denotes SOX9
T10264 1326-1331 VBG denotes using
T10265 1332-1342 RB denotes previously
T10266 1343-1352 VBN denotes described
T10267 1353-1361 NNS denotes reagents
T10268 1362-1363 -LRB- denotes (
T10269 1363-1371 NNP denotes Lefebvre
T10270 1372-1374 FW denotes et
T10271 1375-1378 FW denotes al.
T10272 1379-1383 CD denotes 1998
T10273 1383-1384 : denotes ;
T10274 1385-1390 NNP denotes Huang
T10275 1391-1393 FW denotes et
T10276 1394-1397 FW denotes al.
T10277 1398-1402 CD denotes 2000
T10278 1402-1403 -RRB- denotes )
T10279 1403-1405 , denotes ,
T10280 1405-1407 PRP denotes we
T10281 1408-1412 VBP denotes have
T10282 1418-1424 JJ denotes unable
T10283 1425-1427 TO denotes to
T10284 1428-1434 VB denotes obtain
T10285 1435-1443 JJ denotes specific
T10286 1444-1450 NN denotes signal
T10287 1451-1453 IN denotes at
T10288 1454-1457 DT denotes the
T10289 1473-1479 NNS denotes stages
T10290 1458-1462 JJ denotes late
T10291 1463-1472 JJ denotes postnatal
T10292 1480-1488 VBN denotes required
T10293 1489-1490 -LRB- denotes (
T10294 1502-1506 NNS denotes data
T10295 1490-1501 JJ denotes unpublished
T10296 1506-1507 -RRB- denotes )
T10297 1507-1508 . denotes .
T10298 1508-1673 sentence denotes Furthermore, null mutations in L-Sox5 or Sox-6 cause lethality at or soon after birth, and no effect on cartilage maintenance has been reported (Smits et al. 2001).
T10299 1509-1520 RB denotes Furthermore
T10300 1556-1561 VBP denotes cause
T10301 1520-1522 , denotes ,
T10302 1522-1526 JJ denotes null
T10303 1527-1536 NNS denotes mutations
T10304 1537-1539 IN denotes in
T10305 1540-1541 NN denotes L
T10306 1542-1546 NN denotes Sox5
T10307 1541-1542 HYPH denotes -
T10308 1547-1549 CC denotes or
T10309 1550-1553 NN denotes Sox
T10310 1553-1554 HYPH denotes -
T10311 1554-1555 CD denotes 6
T10312 1562-1571 NN denotes lethality
T10313 1572-1574 IN denotes at
T10314 1575-1577 CC denotes or
T10315 1578-1582 RB denotes soon
T10316 1583-1588 IN denotes after
T10317 1589-1594 NN denotes birth
T10318 1594-1596 , denotes ,
T10319 1596-1599 CC denotes and
T10320 1600-1602 DT denotes no
T10321 1603-1609 NN denotes effect
T10322 1644-1652 VBN denotes reported
T10323 1610-1612 IN denotes on
T10324 1613-1622 NN denotes cartilage
T10325 1623-1634 NN denotes maintenance
T10326 1635-1638 VBZ denotes has
T10327 1639-1643 VBN denotes been
T10328 1653-1654 -LRB- denotes (
T10329 1654-1659 NNP denotes Smits
T10330 1660-1662 FW denotes et
T10331 1663-1666 FW denotes al.
T10332 1667-1671 CD denotes 2001
T10333 1671-1672 -RRB- denotes )
T10334 1672-1673 . denotes .
T10335 1673-1822 sentence denotes However, it seems likely that these or other processes regulated by BMP signaling cooperate with SOX9 to induce target genes in articular cartilage.
T10336 1674-1681 RB denotes However
T10337 1686-1691 VBZ denotes seems
T10338 1681-1683 , denotes ,
T10339 1683-1685 PRP denotes it
T10340 1692-1698 JJ denotes likely
T10341 1699-1703 IN denotes that
T10342 1756-1765 VBP denotes cooperate
T10343 1704-1709 DT denotes these
T10344 1710-1712 CC denotes or
T10345 1713-1718 JJ denotes other
T10346 1719-1728 NNS denotes processes
T10347 1729-1738 VBN denotes regulated
T10348 1739-1741 IN denotes by
T10349 1742-1745 NN denotes BMP
T10350 1746-1755 NN denotes signaling
T10351 1766-1770 IN denotes with
T10352 1771-1775 NN denotes SOX9
T10353 1776-1778 TO denotes to
T10354 1779-1785 VB denotes induce
T10355 1786-1792 JJ denotes target
T10356 1793-1798 NNS denotes genes
T10357 1799-1801 IN denotes in
T10358 1802-1811 JJ denotes articular
T10359 1812-1821 NN denotes cartilage
T10360 1821-1822 . denotes .
R6272 T10008 T10009 nsubj It,is
R6273 T10010 T10009 acomp interesting,is
R6274 T10011 T10012 mark that,continues
R6275 T10012 T10009 ccomp continues,is
R6276 T10013 T10014 det the,factor
R6277 T10014 T10012 nsubj factor,continues
R6278 T10015 T10016 compound SOX9,transcription
R6279 T10016 T10014 compound transcription,factor
R6280 T10017 T10018 aux to,expressed
R6281 T10018 T10012 xcomp expressed,continues
R6282 T10019 T10018 auxpass be,expressed
R6283 T10020 T10018 prep in,expressed
R6284 T10021 T10022 compound mutant,cartilage
R6285 T10022 T10020 pobj cartilage,in
R6286 T10023 T10018 prep despite,expressed
R6287 T10024 T10023 pobj loss,despite
R6288 T10025 T10024 prep of,loss
R6289 T10026 T10025 pobj Col2a1,of
R6290 T10027 T10026 punct ", ",Col2a1
R6291 T10028 T10029 det a,target
R6292 T10029 T10026 appos target,Col2a1
R6293 T10030 T10029 amod direct,target
R6294 T10031 T10029 prep of,target
R6295 T10032 T10033 det this,factor
R6296 T10033 T10031 pobj factor,of
R6297 T10034 T10033 compound transcription,factor
R6298 T10035 T10036 punct (,Bell
R6299 T10036 T10009 meta Bell,is
R6300 T10037 T10036 nmod et,Bell
R6301 T10038 T10036 nmod al.,Bell
R6302 T10039 T10036 nummod 1997,Bell
R6303 T10040 T10036 punct ;,Bell
R6304 T10041 T10036 nmod Lefebvre,Bell
R6305 T10042 T10036 nmod et,Bell
R6306 T10043 T10036 nmod al.,Bell
R6307 T10044 T10036 nummod 1997,Bell
R6308 T10045 T10036 punct ),Bell
R6309 T10046 T10009 punct .,is
R6310 T10048 T10049 amod Previous,studies
R6311 T10049 T10050 nsubj studies,suggest
R6312 T10051 T10052 mark that,modified
R6313 T10052 T10050 ccomp modified,suggest
R6314 T10053 T10054 compound SOX9,activity
R6315 T10054 T10052 nsubjpass activity,modified
R6316 T10055 T10052 aux can,modified
R6317 T10056 T10052 auxpass be,modified
R6318 T10057 T10052 prep by,modified
R6319 T10058 T10059 compound protein,A
R6320 T10059 T10061 npadvmod A,dependent
R6321 T10060 T10059 compound kinase,A
R6322 T10061 T10066 amod dependent,phosphorylation
R6323 T10062 T10059 punct (,A
R6324 T10063 T10059 appos PKA,A
R6325 T10064 T10059 punct ),A
R6326 T10065 T10061 punct -,dependent
R6327 T10066 T10057 pobj phosphorylation,by
R6328 T10067 T10066 compound protein,phosphorylation
R6329 T10068 T10057 punct ", ",by
R6330 T10069 T10057 cc or,by
R6331 T10070 T10057 conj by,by
R6332 T10071 T10070 pobj coexpression,by
R6333 T10072 T10071 prep of,coexpression
R6334 T10073 T10074 nummod two,proteins
R6335 T10074 T10072 pobj proteins,of
R6336 T10075 T10074 amod related,proteins
R6337 T10076 T10074 punct ", ",proteins
R6338 T10077 T10078 compound L,SOX5
R6339 T10078 T10074 appos SOX5,proteins
R6340 T10079 T10078 punct -,SOX5
R6341 T10080 T10078 cc and,SOX5
R6342 T10081 T10078 conj SOX6,SOX5
R6343 T10082 T10083 punct (,Lefebvre
R6344 T10083 T10050 meta Lefebvre,suggest
R6345 T10084 T10083 nmod et,Lefebvre
R6346 T10085 T10083 nmod al.,Lefebvre
R6347 T10086 T10083 nummod 1998,Lefebvre
R6348 T10087 T10083 punct ;,Lefebvre
R6349 T10088 T10083 nmod Huang,Lefebvre
R6350 T10089 T10083 nmod et,Lefebvre
R6351 T10090 T10083 nmod al.,Lefebvre
R6352 T10091 T10083 nummod 2000,Lefebvre
R6353 T10092 T10083 punct ),Lefebvre
R6354 T10093 T10050 punct .,suggest
R6355 T10095 T10096 prep In,reveals
R6356 T10097 T10095 pobj addition,In
R6357 T10098 T10096 punct ", ",reveals
R6358 T10099 T10100 amod close,examination
R6359 T10100 T10096 nsubj examination,reveals
R6360 T10101 T10100 prep of,examination
R6361 T10102 T10103 det the,order
R6362 T10103 T10101 pobj order,of
R6363 T10104 T10103 prep of,order
R6364 T10105 T10104 pobj genes,of
R6365 T10106 T10105 acl induced,genes
R6366 T10107 T10106 prep during,induced
R6367 T10108 T10109 compound chicken,formation
R6368 T10109 T10107 pobj formation,during
R6369 T10110 T10109 compound digit,formation
R6370 T10111 T10112 mark that,turns
R6371 T10112 T10096 ccomp turns,reveals
R6372 T10113 T10112 nsubj Sox9,turns
R6373 T10114 T10112 prt on,turns
R6374 T10115 T10112 advmod first,turns
R6375 T10116 T10112 punct ", ",turns
R6376 T10117 T10112 advcl followed,turns
R6377 T10118 T10117 agent by,followed
R6378 T10119 T10118 pobj Bmpr1b,by
R6379 T10120 T10119 prep with,Bmpr1b
R6380 T10121 T10122 compound L,Sox5
R6381 T10122 T10120 pobj Sox5,with
R6382 T10123 T10122 punct -,Sox5
R6383 T10124 T10119 punct ", ",Bmpr1b
R6384 T10125 T10119 cc and,Bmpr1b
R6385 T10126 T10127 advmod then,Sox6
R6386 T10127 T10119 conj Sox6,Bmpr1b
R6387 T10128 T10127 cc and,Sox6
R6388 T10129 T10130 det the,components
R6389 T10130 T10127 conj components,Sox6
R6390 T10131 T10132 nmod cartilage,matrix
R6391 T10132 T10130 nmod matrix,components
R6392 T10133 T10130 amod structural,components
R6393 T10134 T10130 appos Col2a1,components
R6394 T10135 T10134 cc and,Col2a1
R6395 T10136 T10134 conj Agg,Col2a1
R6396 T10137 T10138 punct (,Chimal
R6397 T10138 T10096 meta Chimal,reveals
R6398 T10139 T10138 punct -,Chimal
R6399 T10140 T10138 nmod Monroy,Chimal
R6400 T10141 T10138 nmod et,Chimal
R6401 T10142 T10138 nmod al.,Chimal
R6402 T10143 T10138 nummod 2003,Chimal
R6403 T10144 T10138 punct ),Chimal
R6404 T10145 T10096 punct .,reveals
R6405 T10147 T10148 det These,results
R6406 T10148 T10149 nsubj results,suggest
R6407 T10150 T10148 punct ", ",results
R6408 T10151 T10148 advmod together,results
R6409 T10152 T10151 prep with,together
R6410 T10153 T10154 det the,pattern
R6411 T10154 T10152 pobj pattern,with
R6412 T10155 T10154 amod altered,pattern
R6413 T10156 T10154 prep of,pattern
R6414 T10157 T10158 compound gene,expression
R6415 T10158 T10156 pobj expression,of
R6416 T10159 T10154 acl seen,pattern
R6417 T10160 T10159 prep in,seen
R6418 T10161 T10162 poss our,mice
R6419 T10162 T10160 pobj mice,in
R6420 T10163 T10164 npadvmod Bmpr1a,deficient
R6421 T10164 T10162 amod deficient,mice
R6422 T10165 T10164 punct -,deficient
R6423 T10166 T10149 punct ", ",suggest
R6424 T10167 T10168 mark that,act
R6425 T10168 T10149 ccomp act,suggest
R6426 T10169 T10170 compound BMPR1A,signaling
R6427 T10170 T10168 nsubj signaling,act
R6428 T10171 T10168 aux may,act
R6429 T10172 T10168 advmod normally,act
R6430 T10173 T10174 aux to,stimulate
R6431 T10174 T10168 xcomp stimulate,act
R6432 T10175 T10174 dobj SOX9,stimulate
R6433 T10176 T10174 prep by,stimulate
R6434 T10177 T10178 amod post-translational,modification
R6435 T10178 T10176 pobj modification,by
R6436 T10179 T10178 compound protein,modification
R6437 T10180 T10174 punct ", ",stimulate
R6438 T10181 T10174 cc or,stimulate
R6439 T10182 T10183 aux to,induce
R6440 T10183 T10174 conj induce,stimulate
R6441 T10184 T10185 compound L,Sox5
R6442 T10185 T10183 dobj Sox5,induce
R6443 T10186 T10185 punct -,Sox5
R6444 T10187 T10185 cc or,Sox5
R6445 T10188 T10185 conj Sox6,Sox5
R6446 T10189 T10183 prep in,induce
R6447 T10190 T10189 pobj cartilage,in
R6448 T10191 T10192 aux to,maintain
R6449 T10192 T10183 advcl maintain,induce
R6450 T10193 T10192 dobj expression,maintain
R6451 T10194 T10193 prep of,expression
R6452 T10195 T10196 compound ECM,components
R6453 T10196 T10194 pobj components,of
R6454 T10197 T10149 punct .,suggest
R6455 T10199 T10200 det These,models
R6456 T10200 T10201 nsubj models,are
R6457 T10202 T10201 acomp consistent,are
R6458 T10203 T10202 prep with,consistent
R6459 T10204 T10205 det the,ability
R6460 T10205 T10203 pobj ability,with
R6461 T10206 T10205 prep of,ability
R6462 T10207 T10206 pobj BMP2,of
R6463 T10208 T10209 aux to,increase
R6464 T10209 T10205 acl increase,ability
R6465 T10210 T10209 preconj both,increase
R6466 T10211 T10212 compound PKA,activity
R6467 T10212 T10209 dobj activity,increase
R6468 T10213 T10209 cc and,increase
R6469 T10214 T10209 conj induce,increase
R6470 T10215 T10214 dobj expression,induce
R6471 T10216 T10215 prep of,expression
R6472 T10217 T10216 pobj Sox6,of
R6473 T10218 T10214 prep in,induce
R6474 T10219 T10220 compound tissue,cells
R6475 T10220 T10218 pobj cells,in
R6476 T10221 T10220 compound culture,cells
R6477 T10222 T10223 punct (,Lee
R6478 T10223 T10201 meta Lee,are
R6479 T10224 T10223 cc and,Lee
R6480 T10225 T10223 conj Chuong,Lee
R6481 T10226 T10225 nummod 1997,Chuong
R6482 T10227 T10225 punct ;,Chuong
R6483 T10228 T10225 conj Fernandez,Chuong
R6484 T10229 T10228 punct -,Fernandez
R6485 T10230 T10228 nmod Lloris,Fernandez
R6486 T10231 T10228 nmod et,Fernandez
R6487 T10232 T10228 nmod al.,Fernandez
R6488 T10233 T10228 nummod 2003,Fernandez
R6489 T10234 T10228 punct ),Fernandez
R6490 T10235 T10201 punct .,are
R6491 T10237 T10238 mark Although,tried
R6492 T10238 T10241 advcl tried,been
R6493 T10239 T10238 nsubj we,tried
R6494 T10240 T10238 aux have,tried
R6495 T10242 T10243 aux to,monitor
R6496 T10243 T10238 xcomp monitor,tried
R6497 T10244 T10245 det the,expression
R6498 T10245 T10243 dobj expression,monitor
R6499 T10246 T10245 prep of,expression
R6500 T10247 T10248 compound L,Sox5
R6501 T10248 T10246 pobj Sox5,of
R6502 T10249 T10248 punct -,Sox5
R6503 T10250 T10248 cc or,Sox5
R6504 T10251 T10248 conj Sox6,Sox5
R6505 T10252 T10243 prep in,monitor
R6506 T10253 T10254 amod postnatal,cartilage
R6507 T10254 T10252 pobj cartilage,in
R6508 T10255 T10254 amod articular,cartilage
R6509 T10256 T10243 punct ", ",monitor
R6510 T10257 T10243 cc and,monitor
R6511 T10258 T10243 conj test,monitor
R6512 T10259 T10260 det the,state
R6513 T10260 T10258 dobj state,test
R6514 T10261 T10260 compound phosphorylation,state
R6515 T10262 T10260 prep of,state
R6516 T10263 T10262 pobj SOX9,of
R6517 T10264 T10258 advcl using,test
R6518 T10265 T10266 advmod previously,described
R6519 T10266 T10267 amod described,reagents
R6520 T10267 T10264 dobj reagents,using
R6521 T10268 T10269 punct (,Lefebvre
R6522 T10269 T10258 meta Lefebvre,test
R6523 T10270 T10269 nmod et,Lefebvre
R6524 T10271 T10269 nmod al.,Lefebvre
R6525 T10272 T10269 nummod 1998,Lefebvre
R6526 T10273 T10269 punct ;,Lefebvre
R6527 T10274 T10269 nmod Huang,Lefebvre
R6528 T10275 T10269 nmod et,Lefebvre
R6529 T10276 T10269 nmod al.,Lefebvre
R6530 T10277 T10269 nummod 2000,Lefebvre
R6531 T10278 T10269 punct ),Lefebvre
R6532 T10279 T10241 punct ", ",been
R6533 T10280 T10241 nsubj we,been
R6534 T10281 T10241 aux have,been
R6535 T10282 T10241 acomp unable,been
R6536 T10283 T10284 aux to,obtain
R6537 T10284 T10282 xcomp obtain,unable
R6538 T10285 T10286 amod specific,signal
R6539 T10286 T10284 dobj signal,obtain
R6540 T10287 T10284 prep at,obtain
R6541 T10288 T10289 det the,stages
R6542 T10289 T10287 pobj stages,at
R6543 T10290 T10289 amod late,stages
R6544 T10291 T10289 amod postnatal,stages
R6545 T10292 T10289 acl required,stages
R6546 T10293 T10294 punct (,data
R6547 T10294 T10241 meta data,been
R6548 T10295 T10294 amod unpublished,data
R6549 T10296 T10294 punct ),data
R6550 T10297 T10241 punct .,been
R6551 T10299 T10300 advmod Furthermore,cause
R6552 T10301 T10300 punct ", ",cause
R6553 T10302 T10303 amod null,mutations
R6554 T10303 T10300 nsubj mutations,cause
R6555 T10304 T10303 prep in,mutations
R6556 T10305 T10306 compound L,Sox5
R6557 T10306 T10304 pobj Sox5,in
R6558 T10307 T10306 punct -,Sox5
R6559 T10308 T10306 cc or,Sox5
R6560 T10309 T10306 conj Sox,Sox5
R6561 T10310 T10309 punct -,Sox
R6562 T10311 T10309 nummod 6,Sox
R6563 T10312 T10300 dobj lethality,cause
R6564 T10313 T10312 prep at,lethality
R6565 T10314 T10313 cc or,at
R6566 T10315 T10316 advmod soon,after
R6567 T10316 T10313 conj after,at
R6568 T10317 T10316 pobj birth,after
R6569 T10318 T10300 punct ", ",cause
R6570 T10319 T10300 cc and,cause
R6571 T10320 T10321 det no,effect
R6572 T10321 T10322 nsubjpass effect,reported
R6573 T10322 T10300 conj reported,cause
R6574 T10323 T10321 prep on,effect
R6575 T10324 T10325 compound cartilage,maintenance
R6576 T10325 T10323 pobj maintenance,on
R6577 T10326 T10322 aux has,reported
R6578 T10327 T10322 auxpass been,reported
R6579 T10328 T10329 punct (,Smits
R6580 T10329 T10322 meta Smits,reported
R6581 T10330 T10329 nmod et,Smits
R6582 T10331 T10329 nmod al.,Smits
R6583 T10332 T10329 nummod 2001,Smits
R6584 T10333 T10329 punct ),Smits
R6585 T10334 T10322 punct .,reported
R6586 T10336 T10337 advmod However,seems
R6587 T10338 T10337 punct ", ",seems
R6588 T10339 T10337 nsubj it,seems
R6589 T10340 T10337 oprd likely,seems
R6590 T10341 T10342 mark that,cooperate
R6591 T10342 T10337 ccomp cooperate,seems
R6592 T10343 T10342 nsubj these,cooperate
R6593 T10344 T10343 cc or,these
R6594 T10345 T10346 amod other,processes
R6595 T10346 T10343 conj processes,these
R6596 T10347 T10346 acl regulated,processes
R6597 T10348 T10347 agent by,regulated
R6598 T10349 T10350 compound BMP,signaling
R6599 T10350 T10348 pobj signaling,by
R6600 T10351 T10342 prep with,cooperate
R6601 T10352 T10351 pobj SOX9,with
R6602 T10353 T10354 aux to,induce
R6603 T10354 T10342 advcl induce,cooperate
R6604 T10355 T10356 amod target,genes
R6605 T10356 T10354 dobj genes,induce
R6606 T10357 T10354 prep in,induce
R6607 T10358 T10359 amod articular,cartilage
R6608 T10359 T10357 pobj cartilage,in
R6609 T10360 T10337 punct .,seems

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9040 27-31 PR_EXT:000015435 denotes SOX9
T9041 32-45 GO_EXT:transcription denotes transcription
T9042 32-52 GO_EXT:transcription_factor denotes transcription factor
T9043 69-78 GO:0010467 denotes expressed
T9044 82-88 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T9045 89-98 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T9046 115-121 PR_EXT:000003266 denotes Col2a1
T9047 147-160 GO_EXT:transcription denotes transcription
T9048 147-167 GO_EXT:transcription_factor denotes transcription factor
T9049 240-244 PR_EXT:000015435 denotes SOX9
T9050 273-280 CHEBI_PR_EXT:protein denotes protein
T9051 273-289 GO_EXT:0004691 denotes protein kinase A
T9052 291-294 GO_EXT:0004691 denotes PKA
T9053 306-313 CHEBI_PR_EXT:protein denotes protein
T9054 306-329 GO:0006468 denotes protein phosphorylation
T9055 339-349 GO:0010467 denotes expression
T9056 365-373 CHEBI_PR_EXT:protein denotes proteins
T9057 375-381 PR_EXT:000026780 denotes L-SOX5
T9058 386-390 PR_EXT:000015432 denotes SOX6
T9059 481-486 SO_EXT:0000704 denotes genes
T9060 502-509 NCBITaxon:9031 denotes chicken
T9061 510-515 UBERON:0002544 denotes digit
T9062 539-543 PR_EXT:000015435 denotes Sox9
T9063 572-578 PR_EXT:000000036 denotes Bmpr1b
T9064 584-590 PR_EXT:000026780 denotes L-Sox5
T9065 601-605 PR_EXT:000015432 denotes Sox6
T9066 614-623 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T9067 624-630 GO:0031012 denotes matrix
T9068 653-659 PR_EXT:000003266 denotes Col2a1
T9069 664-667 PR_EXT:000003606 denotes Agg
T9070 749-753 SO_EXT:0000704 denotes gene
T9071 749-764 GO:0010467 denotes gene expression
T9072 777-783 PR_EXT:000000035 denotes Bmpr1a
T9073 794-798 NCBITaxon:10088 denotes mice
T9074 813-819 PR_EXT:000000035 denotes BMPR1A
T9075 820-829 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T9076 860-864 PR_EXT:000015435 denotes SOX9
T9077 868-907 GO_SO_EXT:post_translational_modification_entity_or_process denotes post-translational protein modification
T9078 887-894 CHEBI_PR_EXT:protein denotes protein
T9079 922-928 PR_EXT:000026780 denotes L-Sox5
T9080 932-936 PR_EXT:000015432 denotes Sox6
T9081 940-949 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T9082 962-972 GO:0010467 denotes expression
T9083 976-990 GO:0044420 denotes ECM components
T9084 1040-1044 PR_EXT:000000164 denotes BMP2
T9085 1062-1065 GO_EXT:0004691 denotes PKA
T9086 1086-1096 GO:0010467 denotes expression
T9087 1100-1104 PR_EXT:000015432 denotes Sox6
T9088 1108-1114 UBERON:0000479 denotes tissue
T9089 1115-1128 CL:0000010 denotes culture cells
T9090 1123-1128 CL_GO_EXT:cell denotes cells
T9091 1220-1230 GO:0010467 denotes expression
T9092 1234-1240 PR_EXT:000026780 denotes L-Sox5
T9093 1244-1248 PR_EXT:000015432 denotes Sox6
T9094 1256-1261 GO:0007567 denotes natal
T9095 1262-1281 UBERON:0010996 denotes articular cartilage
T9096 1296-1311 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T9097 1321-1325 PR_EXT:000015435 denotes SOX9
T9098 1353-1361 CHEBI_EXT:33893 denotes reagents
T9099 1467-1472 GO:0007567 denotes natal
T9100 1522-1526 SO_EXT:sequence_nullness denotes null
T9101 1527-1536 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T9102 1540-1546 PR_EXT:000026780 denotes L-Sox5
T9103 1550-1555 PR_EXT:000015432 denotes Sox-6
T9104 1562-1571 GO_EXT:fatality_or_lethality denotes lethality
T9105 1589-1594 GO:0007567 denotes birth
T9106 1613-1622 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T9107 1729-1738 GO:0065007 denotes regulated
T9108 1742-1745 PR_EXT:000000034 denotes BMP
T9109 1742-1755 GO:0030509 denotes BMP signaling
T9110 1771-1775 PR_EXT:000015435 denotes SOX9
T9111 1793-1798 SO_EXT:0000704 denotes genes
T9112 1802-1821 UBERON:0010996 denotes articular cartilage

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8742 27-31 PR:000015435 denotes SOX9
T8743 69-78 GO:0010467 denotes expressed
T8744 115-121 PR:000003266 denotes Col2a1
T8745 240-244 PR:000015435 denotes SOX9
T8746 306-329 GO:0006468 denotes protein phosphorylation
T8747 339-349 GO:0010467 denotes expression
T8748 375-381 PR:000026780 denotes L-SOX5
T8749 386-390 PR:000015432 denotes SOX6
T8750 481-486 SO:0000704 denotes genes
T8751 502-509 NCBITaxon:9031 denotes chicken
T8752 510-515 UBERON:0002544 denotes digit
T8753 539-543 PR:000015435 denotes Sox9
T8754 572-578 PR:000000036 denotes Bmpr1b
T8755 584-590 PR:000026780 denotes L-Sox5
T8756 601-605 PR:000015432 denotes Sox6
T8757 624-630 GO:0031012 denotes matrix
T8758 653-659 PR:000003266 denotes Col2a1
T8759 664-667 PR:000003606 denotes Agg
T8760 749-753 SO:0000704 denotes gene
T8761 749-764 GO:0010467 denotes gene expression
T8762 777-783 PR:000000035 denotes Bmpr1a
T8763 794-798 NCBITaxon:10088 denotes mice
T8764 813-819 PR:000000035 denotes BMPR1A
T8765 860-864 PR:000015435 denotes SOX9
T8766 873-886 GO:0006412 denotes translational
T8767 922-928 PR:000026780 denotes L-Sox5
T8768 932-936 PR:000015432 denotes Sox6
T8769 962-972 GO:0010467 denotes expression
T8770 976-990 GO:0044420 denotes ECM components
T8771 1040-1044 PR:000000164 denotes BMP2
T8772 1086-1096 GO:0010467 denotes expression
T8773 1100-1104 PR:000015432 denotes Sox6
T8774 1108-1114 UBERON:0000479 denotes tissue
T8775 1115-1128 CL:0000010 denotes culture cells
T8776 1220-1230 GO:0010467 denotes expression
T8777 1234-1240 PR:000026780 denotes L-Sox5
T8778 1244-1248 PR:000015432 denotes Sox6
T8779 1256-1261 GO:0007567 denotes natal
T8780 1262-1281 UBERON:0010996 denotes articular cartilage
T8781 1321-1325 PR:000015435 denotes SOX9
T8782 1353-1361 CHEBI:33893 denotes reagents
T8783 1467-1472 GO:0007567 denotes natal
T8784 1540-1546 PR:000026780 denotes L-Sox5
T8785 1550-1555 PR:000015432 denotes Sox-6
T8786 1589-1594 GO:0007567 denotes birth
T8787 1729-1738 GO:0065007 denotes regulated
T8788 1742-1745 PR:000000034 denotes BMP
T8789 1742-1755 GO:0030509 denotes BMP signaling
T8790 1771-1775 PR:000015435 denotes SOX9
T8791 1793-1798 SO:0000704 denotes genes
T8792 1802-1821 UBERON:0010996 denotes articular cartilage

2_test

Id Subject Object Predicate Lexical cue
15492776-9171829-84887335 181-185 9171829 denotes 1997
15492776-9121483-84887336 203-207 9121483 denotes 1997
15492776-9755172-84887337 408-412 9755172 denotes 1998
15492776-10805756-84887338 427-431 10805756 denotes 2000
15492776-12729559-84887339 690-694 12729559 denotes 2003
15492776-9009144-84887340 1145-1149 9009144 denotes 1997
15492776-12677004-84887341 1175-1179 12677004 denotes 2003
15492776-9755172-84887342 1379-1383 9755172 denotes 1998
15492776-10805756-84887343 1398-1402 10805756 denotes 2000
15492776-11702786-84887344 1667-1671 11702786 denotes 2001
T75708 181-185 9171829 denotes 1997
T20775 203-207 9121483 denotes 1997
T53037 408-412 9755172 denotes 1998
T45112 427-431 10805756 denotes 2000
T46275 690-694 12729559 denotes 2003
T99416 1145-1149 9009144 denotes 1997
T47501 1175-1179 12677004 denotes 2003
T55074 1379-1383 9755172 denotes 1998
T34298 1398-1402 10805756 denotes 2000
T1628 1667-1671 11702786 denotes 2001