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PMC:516044 / 9570-10325 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2809 754-755 . denotes .
T2808 747-749 NN denotes RT
T2807 750-754 NN denotes step
T2806 743-746 DT denotes the
T2805 740-742 IN denotes of
T2804 731-739 NN denotes omission
T2803 728-730 IN denotes by
T2802 722-726 CD denotes 0.02
T2801 726-727 NN denotes %
T2800 721-722 SYM denotes <
T2799 718-720 VB denotes be
T2798 715-717 TO denotes to
T2797 702-705 VBD denotes was
T2796 694-701 NNS denotes samples
T2795 690-693 NN denotes ear
T2794 684-689 JJ denotes inner
T2793 681-683 IN denotes of
T2792 706-714 VBN denotes assessed
T2791 667-680 NN denotes contamination
T2790 659-666 JJ denotes Genomic
T2789 658-755 sentence denotes Genomic contamination of inner ear samples was assessed to be <0.02% by omission of the RT step.
T2788 657-658 . denotes .
T2787 650-657 NNS denotes amounts
T2786 643-649 NN denotes tissue
T2785 635-642 VB denotes compare
T2784 632-634 TO denotes to
T2783 622-626 VBD denotes were
T2782 617-621 NN denotes rRNA
T2781 613-616 NN denotes 18S
T2780 610-612 IN denotes of
T2740 439-440 SYM denotes ×
T2739 444-445 CD denotes 4
T2738 434-438 CD denotes 3.39
T2737 432-433 SYM denotes +
T2736 427-428 SYM denotes *
T2735 429-431 NN denotes S4
T2734 424-425 HYPH denotes -
T2733 422-424 CD denotes 10
T2732 420-421 SYM denotes ×
T2731 425-426 CD denotes 3
T2730 414-419 CD denotes 11.38
T2729 412-413 SYM denotes +
T2728 407-408 SYM denotes ×
T2727 409-411 NN denotes S3
T2726 402-406 CD denotes 0.15
T2725 400-401 SYM denotes +
T2724 395-396 SYM denotes ×
T2723 397-399 NN denotes S2
T2722 390-394 CD denotes 1.05
T2721 388-389 SYM denotes +
T2720 384-385 SYM denotes ×
T2719 386-387 NN denotes S
T2718 379-383 CD denotes 3.80
T2717 377-378 SYM denotes +
T2716 370-371 SYM denotes =
T2715 372-376 CD denotes 7.39
T2714 368-369 NN denotes F
T2713 366-368 : denotes :
T2712 349-350 HYPH denotes -
T2711 350-355 NN denotes order
T2710 344-349 JJ denotes fifth
T2709 339-340 HYPH denotes -
T2708 340-343 NN denotes fit
T2707 335-339 JJ denotes best
T2706 356-366 NN denotes polynomial
T2705 333-334 DT denotes a
T2704 329-332 IN denotes via
T2703 316-322 NN denotes growth
T2702 323-328 NN denotes curve
T2701 312-315 DT denotes the
T2700 309-311 IN denotes of
T2699 295-296 SYM denotes -
T2698 296-302 JJ denotes linear
T2697 292-295 NN denotes log
T2696 303-308 NN denotes phase
T2695 288-291 DT denotes the
T2694 285-287 IN denotes of
T2693 283-284 -RRB- denotes )
T2692 282-283 NN denotes S
T2691 281-282 -LRB- denotes (
T2690 275-280 NN denotes slope
T2689 271-274 DT denotes the
T2688 266-270 IN denotes from
T2687 253-256 VBD denotes was
T2686 251-252 -RRB- denotes )
T2685 250-251 NN denotes F
T2684 249-250 -LRB- denotes (
T2683 257-265 VBN denotes obtained
T2682 240-248 NN denotes Fidelity
T2681 239-451 sentence denotes Fidelity (F) was obtained from the slope (S) of the log-linear phase of the growth curve via a best-fit fifth-order polynomial: F = 7.39 + 3.80 × S + 1.05 × S2 + 0.15 × S3 + 11.38 × 10-3 * S4 + 3.39 × 10-4 × S5.
T2680 238-239 . denotes .
T2679 237-238 -RRB- denotes ]
T2678 235-237 CD denotes 15
T2677 234-235 -LRB- denotes [
T2676 217-223 VBN denotes chosen
T2675 224-233 NN denotes threshold
T2674 215-216 DT denotes a
T2673 197-206 NNS denotes molecules
T2672 189-196 NN denotes product
T2671 186-188 IN denotes of
T2670 179-185 NN denotes number
T2669 175-178 DT denotes the
T2668 169-174 WDT denotes which
T2667 207-214 VBZ denotes reaches
T2666 166-168 IN denotes at
T2665 160-165 NN denotes cycle
T2664 156-159 DT denotes the
T2663 153-155 VBZ denotes is
T2662 150-152 NN denotes Ct
T2661 146-149 CC denotes and
T2660 137-145 NN denotes reaction
T2659 133-136 DT denotes the
T2658 130-132 IN denotes of
T2657 121-129 NN denotes fidelity
T2656 117-120 DT denotes the
T2655 114-116 VBZ denotes is
T2654 112-113 NN denotes F
T2653 110-112 , denotes ,
T2652 101-110 NNS denotes molecules
T2651 93-100 NN denotes product
T2650 90-92 IN denotes of
T2649 83-89 NN denotes number
T2648 79-82 DT denotes the
T2647 74-75 NN denotes P
T2646 76-78 VBZ denotes is
T2645 68-73 WRB denotes where
T2644 66-67 -RRB- denotes )
T2643 63-64 SYM denotes ^
T2642 61-62 NN denotes F
T2641 60-61 -LRB- denotes (
T2640 64-66 NN denotes Ct
T2639 58-59 SYM denotes /
T2638 54-55 SYM denotes =
T2637 56-57 NN denotes P
T2636 52-53 NN denotes T
T2635 49-51 IN denotes to
T2634 39-48 VBG denotes according
T2633 23-27 VBD denotes were
T2632 21-22 -RRB- denotes )
T2631 20-21 NN denotes T
T2630 19-20 -LRB- denotes (
T2629 28-38 VBN denotes quantified
T2628 9-18 NNS denotes molecules
T2779 627-631 VBN denotes used
T2778 594-609 NNS denotes Quantifications
T2777 593-658 sentence denotes Quantifications of 18S rRNA were used to compare tissue amounts.
T2776 592-593 . denotes .
T2775 589-590 SYM denotes ^
T2774 590-592 NN denotes Ct
T2773 587-588 NN denotes F
T2772 585-586 SYM denotes ×
T2771 581-582 SYM denotes =
T2770 583-584 NN denotes T
T2769 577-580 NN denotes PCt
T2768 574-576 IN denotes to
T2767 564-573 VBG denotes according
T2766 559-563 NN denotes rRNA
T2765 555-558 NN denotes 18S
T2764 552-554 IN denotes of
T2763 544-551 NNS denotes amounts
T2762 538-543 VBN denotes known
T2761 535-537 IN denotes of
T2760 521-534 NN denotes amplification
T2759 518-520 IN denotes by
T2758 503-506 VBD denotes was
T2757 501-502 -RRB- denotes )
T2756 498-501 NN denotes PCt
T2755 497-498 -LRB- denotes (
T2754 487-496 NN denotes threshold
T2753 484-486 IN denotes at
T2752 474-483 NNS denotes molecules
T2751 466-473 NN denotes product
T2750 463-465 IN denotes of
T2749 507-517 VBN denotes determined
T2748 456-462 NN denotes number
T2747 452-455 DT denotes The
T2746 451-593 sentence denotes The number of product molecules at threshold (PCt) was determined by amplification of known amounts of 18S rRNA according to PCt = T × F ^Ct.
T2745 450-451 . denotes .
T2744 446-447 SYM denotes ×
T2743 448-450 NN denotes S5
T2742 443-444 HYPH denotes -
T2741 441-443 CD denotes 10
R1682 T2628 T2629 nsubjpass molecules,quantified
R1683 T2630 T2628 punct (,molecules
R1684 T2631 T2628 appos T,molecules
R1685 T2632 T2628 punct ),molecules
R1686 T2633 T2629 auxpass were,quantified
R1687 T2634 T2629 prep according,quantified
R1688 T2635 T2634 prep to,according
R1689 T2636 T2637 nsubj T,P
R1690 T2637 T2635 pcomp P,to
R1691 T2638 T2637 punct =,P
R1692 T2639 T2640 punct /,Ct
R1693 T2640 T2637 prep Ct,P
R1694 T2641 T2640 punct (,Ct
R1695 T2642 T2640 nmod F,Ct
R1696 T2643 T2640 punct ^,Ct
R1697 T2644 T2640 punct ),Ct
R1698 T2645 T2646 advmod where,is
R1699 T2646 T2637 advcl is,P
R1700 T2647 T2646 nsubj P,is
R1701 T2648 T2649 det the,number
R1702 T2649 T2646 attr number,is
R1703 T2650 T2649 prep of,number
R1704 T2651 T2652 compound product,molecules
R1705 T2652 T2650 pobj molecules,of
R1706 T2653 T2646 punct ", ",is
R1707 T2654 T2655 nsubj F,is
R1708 T2655 T2646 conj is,is
R1709 T2656 T2657 det the,fidelity
R1710 T2657 T2655 attr fidelity,is
R1711 T2658 T2657 prep of,fidelity
R1712 T2659 T2660 det the,reaction
R1713 T2660 T2658 pobj reaction,of
R1714 T2661 T2655 cc and,is
R1715 T2662 T2663 nsubj Ct,is
R1716 T2663 T2655 conj is,is
R1717 T2664 T2665 det the,cycle
R1718 T2665 T2663 attr cycle,is
R1719 T2666 T2667 prep at,reaches
R1720 T2667 T2665 relcl reaches,cycle
R1721 T2668 T2666 pobj which,at
R1722 T2669 T2670 det the,number
R1723 T2670 T2667 nsubj number,reaches
R1724 T2671 T2670 prep of,number
R1725 T2672 T2673 compound product,molecules
R1726 T2673 T2671 pobj molecules,of
R1727 T2674 T2675 det a,threshold
R1728 T2675 T2667 dobj threshold,reaches
R1729 T2676 T2675 amod chosen,threshold
R1730 T2677 T2678 punct [,15
R1731 T2678 T2646 parataxis 15,is
R1732 T2679 T2678 punct ],15
R1733 T2680 T2629 punct .,quantified
R1734 T2682 T2683 nsubjpass Fidelity,obtained
R1735 T2684 T2682 punct (,Fidelity
R1736 T2685 T2682 appos F,Fidelity
R1737 T2686 T2682 punct ),Fidelity
R1738 T2687 T2683 auxpass was,obtained
R1739 T2688 T2683 prep from,obtained
R1740 T2689 T2690 det the,slope
R1741 T2690 T2688 pobj slope,from
R1742 T2691 T2690 punct (,slope
R1743 T2692 T2690 appos S,slope
R1744 T2693 T2690 punct ),slope
R1745 T2694 T2690 prep of,slope
R1746 T2695 T2696 det the,phase
R1747 T2696 T2694 pobj phase,of
R1748 T2697 T2698 npadvmod log,linear
R1749 T2698 T2696 amod linear,phase
R1750 T2699 T2698 punct -,linear
R1751 T2700 T2696 prep of,phase
R1752 T2701 T2702 det the,curve
R1753 T2702 T2700 pobj curve,of
R1754 T2703 T2702 compound growth,curve
R1755 T2704 T2683 prep via,obtained
R1756 T2705 T2706 det a,polynomial
R1757 T2706 T2704 pobj polynomial,via
R1758 T2707 T2708 amod best,fit
R1759 T2708 T2706 nmod fit,polynomial
R1760 T2709 T2708 punct -,fit
R1761 T2710 T2711 amod fifth,order
R1762 T2711 T2706 compound order,polynomial
R1763 T2712 T2711 punct -,order
R1764 T2713 T2706 punct : ,polynomial
R1765 T2714 T2715 nsubj F,7.39
R1766 T2715 T2706 appos 7.39,polynomial
R1767 T2716 T2715 punct =,7.39
R1768 T2717 T2715 punct +,7.39
R1769 T2718 T2719 nummod 3.80,S
R1770 T2719 T2715 appos S,7.39
R1771 T2720 T2719 punct ×,S
R1772 T2721 T2715 punct +,7.39
R1773 T2722 T2723 nummod 1.05,S2
R1774 T2723 T2715 appos S2,7.39
R1775 T2724 T2723 punct ×,S2
R1776 T2725 T2715 punct +,7.39
R1777 T2726 T2727 nummod 0.15,S3
R1778 T2727 T2715 appos S3,7.39
R1779 T2728 T2727 punct ×,S3
R1780 T2729 T2715 punct +,7.39
R1781 T2730 T2731 quantmod 11.38,3
R1782 T2731 T2735 nummod 3,S4
R1783 T2732 T2731 punct ×,3
R1784 T2733 T2731 compound 10,3
R1785 T2734 T2731 punct -,3
R1786 T2735 T2715 appos S4,7.39
R1787 T2736 T2735 punct *,S4
R1788 T2737 T2715 punct +,7.39
R1789 T2738 T2739 quantmod 3.39,4
R1790 T2739 T2743 nummod 4,S5
R1791 T2740 T2739 punct ×,4
R1792 T2741 T2739 compound 10,4
R1793 T2742 T2739 punct -,4
R1794 T2743 T2715 appos S5,7.39
R1795 T2744 T2743 punct ×,S5
R1796 T2745 T2683 punct .,obtained
R1797 T2747 T2748 det The,number
R1798 T2748 T2749 nsubjpass number,determined
R1799 T2750 T2748 prep of,number
R1800 T2751 T2752 compound product,molecules
R1801 T2752 T2750 pobj molecules,of
R1802 T2753 T2752 prep at,molecules
R1803 T2754 T2753 pobj threshold,at
R1804 T2755 T2752 punct (,molecules
R1805 T2756 T2752 appos PCt,molecules
R1806 T2757 T2752 punct ),molecules
R1807 T2758 T2749 auxpass was,determined
R1808 T2759 T2749 prep by,determined
R1809 T2760 T2759 pobj amplification,by
R1810 T2761 T2760 prep of,amplification
R1811 T2762 T2763 amod known,amounts
R1812 T2763 T2761 pobj amounts,of
R1813 T2764 T2763 prep of,amounts
R1814 T2765 T2766 compound 18S,rRNA
R1815 T2766 T2764 pobj rRNA,of
R1816 T2767 T2760 prep according,amplification
R1817 T2768 T2767 prep to,according
R1818 T2769 T2770 nsubj PCt,T
R1819 T2770 T2768 pcomp T,to
R1820 T2771 T2770 punct =,T
R1821 T2772 T2770 punct ×,T
R1822 T2773 T2774 nmod F,Ct
R1823 T2774 T2770 appos Ct,T
R1824 T2775 T2774 punct ^,Ct
R1825 T2776 T2749 punct .,determined
R1826 T2778 T2779 nsubjpass Quantifications,used
R1827 T2780 T2778 prep of,Quantifications
R1828 T2781 T2782 compound 18S,rRNA
R1829 T2782 T2780 pobj rRNA,of
R1830 T2783 T2779 auxpass were,used
R1831 T2784 T2785 aux to,compare
R1832 T2785 T2779 advcl compare,used
R1833 T2786 T2787 compound tissue,amounts
R1834 T2787 T2785 dobj amounts,compare
R1835 T2788 T2779 punct .,used
R1836 T2790 T2791 amod Genomic,contamination
R1837 T2791 T2792 nsubjpass contamination,assessed
R1838 T2793 T2791 prep of,contamination
R1839 T2794 T2795 amod inner,ear
R1840 T2795 T2796 compound ear,samples
R1841 T2796 T2793 pobj samples,of
R1842 T2797 T2792 auxpass was,assessed
R1843 T2798 T2799 aux to,be
R1844 T2799 T2792 xcomp be,assessed
R1845 T2800 T2801 punct <,%
R1846 T2801 T2799 acomp %,be
R1847 T2802 T2801 nummod 0.02,%
R1848 T2803 T2792 prep by,assessed
R1849 T2804 T2803 pobj omission,by
R1850 T2805 T2804 prep of,omission
R1851 T2806 T2807 det the,step
R1852 T2807 T2805 pobj step,of
R1853 T2808 T2807 compound RT,step
R1854 T2809 T2792 punct .,assessed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2209 747-749 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T2208 684-693 UBERON:0001846 denotes inner ear
T2207 659-666 SO_EXT:0001026 denotes Genomic
T2206 643-649 UBERON:0000479 denotes tissue
T2205 617-621 CHEBI_SO_EXT:rRNA denotes rRNA
T2204 613-621 SO_EXT:0000407 denotes 18S rRNA
T2203 559-563 CHEBI_SO_EXT:rRNA denotes rRNA
T2202 555-563 SO_EXT:0000407 denotes 18S rRNA
T2201 474-483 CHEBI:36357 denotes molecules
T2200 197-206 CHEBI:36357 denotes molecules
T2199 101-110 CHEBI:36357 denotes molecules
T2198 9-18 CHEBI:36357 denotes molecules

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2139 684-693 UBERON:0001846 denotes inner ear
T2138 659-666 SO:0001026 denotes Genomic
T2137 643-649 UBERON:0000479 denotes tissue
T2136 613-621 SO:0000407 denotes 18S rRNA
T2135 555-563 SO:0000407 denotes 18S rRNA
T2134 474-483 CHEBI:36357 denotes molecules
T2133 197-206 CHEBI:36357 denotes molecules
T2132 101-110 CHEBI:36357 denotes molecules
T2131 9-18 CHEBI:36357 denotes molecules

2_test

Id Subject Object Predicate Lexical cue
15320950-10079033-12070956 235-237 10079033 denotes 15