PMC:5118444 / 1368-2288 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/5118444","sourcedb":"PMC","sourceid":"5118444","source_url":"https://www.ncbi.nlm.nih.gov/pmc/5118444","text":"Copy number variations (CNVs) are gains and losses of large regions of genomic sequence between individuals of a species (Mills et al., 2011). CNVs have been well-studied and linked to various phenotypic traits and diseases in humans and rodents (Cook and Scherer, 2008; Almal and Padh, 2012; Girirajan et al., 2013). Initial CNV studies have been performed in a number of domesticated animals: dog (Nicholas et al., 2011; Alvarez and Akey, 2012; Berglund et al., 2012), sheep (Fontanesi et al., 2011; Liu et al., 2013), pig (Fadista et al., 2008; Ramayo-Caldas et al., 2010; Chen et al., 2012; Paudel et al., 2013, 2015), chicken (Crooijmans et al., 2013; Yi et al., 2014), and goat (Fontanesi et al., 2010). These studies have linked many phenotypic traits to CNV, including chicken pea-comb phenotype (Wright et al., 2009) and white coat color in pigs and sheep (Johansson Moller et al., 1996; Norris and Whan, 2008).","tracks":[{"project":"2_test","denotations":[{"id":"27920798-21293372-33484628","span":{"begin":136,"end":140},"obj":"21293372"},{"id":"27920798-18923514-33484629","span":{"begin":265,"end":269},"obj":"18923514"},{"id":"27920798-21956041-33484630","span":{"begin":287,"end":291},"obj":"21956041"},{"id":"27920798-23375656-33484631","span":{"begin":311,"end":315},"obj":"23375656"},{"id":"27920798-21846351-33484632","span":{"begin":417,"end":421},"obj":"21846351"},{"id":"27920798-22138850-33484633","span":{"begin":441,"end":445},"obj":"22138850"},{"id":"27920798-22916802-33484634","span":{"begin":464,"end":468},"obj":"22916802"},{"id":"27920798-21111040-33484635","span":{"begin":496,"end":500},"obj":"21111040"},{"id":"27920798-23565757-33484636","span":{"begin":514,"end":518},"obj":"23565757"},{"id":"27920798-19079605-33484637","span":{"begin":542,"end":546},"obj":"19079605"},{"id":"27920798-20969757-33484638","span":{"begin":570,"end":574},"obj":"20969757"},{"id":"27920798-23270433-33484639","span":{"begin":589,"end":593},"obj":"23270433"},{"id":"27920798-23829399-33484640","span":{"begin":610,"end":614},"obj":"23829399"},{"id":"27920798-25896665-33484641","span":{"begin":616,"end":620},"obj":"25896665"},{"id":"27920798-23763846-33484642","span":{"begin":651,"end":655},"obj":"23763846"},{"id":"27920798-25378104-33484643","span":{"begin":668,"end":672},"obj":"25378104"},{"id":"27920798-21083884-33484644","span":{"begin":703,"end":707},"obj":"21083884"},{"id":"27920798-19521496-33484645","span":{"begin":820,"end":824},"obj":"19521496"},{"id":"27920798-8875890-33484646","span":{"begin":891,"end":895},"obj":"8875890"},{"id":"27920798-18493018-33484647","span":{"begin":914,"end":918},"obj":"18493018"}],"attributes":[{"subj":"27920798-21293372-33484628","pred":"source","obj":"2_test"},{"subj":"27920798-18923514-33484629","pred":"source","obj":"2_test"},{"subj":"27920798-21956041-33484630","pred":"source","obj":"2_test"},{"subj":"27920798-23375656-33484631","pred":"source","obj":"2_test"},{"subj":"27920798-21846351-33484632","pred":"source","obj":"2_test"},{"subj":"27920798-22138850-33484633","pred":"source","obj":"2_test"},{"subj":"27920798-22916802-33484634","pred":"source","obj":"2_test"},{"subj":"27920798-21111040-33484635","pred":"source","obj":"2_test"},{"subj":"27920798-23565757-33484636","pred":"source","obj":"2_test"},{"subj":"27920798-19079605-33484637","pred":"source","obj":"2_test"},{"subj":"27920798-20969757-33484638","pred":"source","obj":"2_test"},{"subj":"27920798-23270433-33484639","pred":"source","obj":"2_test"},{"subj":"27920798-23829399-33484640","pred":"source","obj":"2_test"},{"subj":"27920798-25896665-33484641","pred":"source","obj":"2_test"},{"subj":"27920798-23763846-33484642","pred":"source","obj":"2_test"},{"subj":"27920798-25378104-33484643","pred":"source","obj":"2_test"},{"subj":"27920798-21083884-33484644","pred":"source","obj":"2_test"},{"subj":"27920798-19521496-33484645","pred":"source","obj":"2_test"},{"subj":"27920798-8875890-33484646","pred":"source","obj":"2_test"},{"subj":"27920798-18493018-33484647","pred":"source","obj":"2_test"}]},{"project":"MyTest","denotations":[{"id":"27920798-21293372-33484628","span":{"begin":136,"end":140},"obj":"21293372"},{"id":"27920798-18923514-33484629","span":{"begin":265,"end":269},"obj":"18923514"},{"id":"27920798-21956041-33484630","span":{"begin":287,"end":291},"obj":"21956041"},{"id":"27920798-23375656-33484631","span":{"begin":311,"end":315},"obj":"23375656"},{"id":"27920798-21846351-33484632","span":{"begin":417,"end":421},"obj":"21846351"},{"id":"27920798-22138850-33484633","span":{"begin":441,"end":445},"obj":"22138850"},{"id":"27920798-22916802-33484634","span":{"begin":464,"end":468},"obj":"22916802"},{"id":"27920798-21111040-33484635","span":{"begin":496,"end":500},"obj":"21111040"},{"id":"27920798-23565757-33484636","span":{"begin":514,"end":518},"obj":"23565757"},{"id":"27920798-19079605-33484637","span":{"begin":542,"end":546},"obj":"19079605"},{"id":"27920798-20969757-33484638","span":{"begin":570,"end":574},"obj":"20969757"},{"id":"27920798-23270433-33484639","span":{"begin":589,"end":593},"obj":"23270433"},{"id":"27920798-23829399-33484640","span":{"begin":610,"end":614},"obj":"23829399"},{"id":"27920798-25896665-33484641","span":{"begin":616,"end":620},"obj":"25896665"},{"id":"27920798-23763846-33484642","span":{"begin":651,"end":655},"obj":"23763846"},{"id":"27920798-25378104-33484643","span":{"begin":668,"end":672},"obj":"25378104"},{"id":"27920798-21083884-33484644","span":{"begin":703,"end":707},"obj":"21083884"},{"id":"27920798-19521496-33484645","span":{"begin":820,"end":824},"obj":"19521496"},{"id":"27920798-8875890-33484646","span":{"begin":891,"end":895},"obj":"8875890"},{"id":"27920798-18493018-33484647","span":{"begin":914,"end":918},"obj":"18493018"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"attributes":[{"subj":"27920798-21293372-33484628","pred":"source","obj":"MyTest"},{"subj":"27920798-18923514-33484629","pred":"source","obj":"MyTest"},{"subj":"27920798-21956041-33484630","pred":"source","obj":"MyTest"},{"subj":"27920798-23375656-33484631","pred":"source","obj":"MyTest"},{"subj":"27920798-21846351-33484632","pred":"source","obj":"MyTest"},{"subj":"27920798-22138850-33484633","pred":"source","obj":"MyTest"},{"subj":"27920798-22916802-33484634","pred":"source","obj":"MyTest"},{"subj":"27920798-21111040-33484635","pred":"source","obj":"MyTest"},{"subj":"27920798-23565757-33484636","pred":"source","obj":"MyTest"},{"subj":"27920798-19079605-33484637","pred":"source","obj":"MyTest"},{"subj":"27920798-20969757-33484638","pred":"source","obj":"MyTest"},{"subj":"27920798-23270433-33484639","pred":"source","obj":"MyTest"},{"subj":"27920798-23829399-33484640","pred":"source","obj":"MyTest"},{"subj":"27920798-25896665-33484641","pred":"source","obj":"MyTest"},{"subj":"27920798-23763846-33484642","pred":"source","obj":"MyTest"},{"subj":"27920798-25378104-33484643","pred":"source","obj":"MyTest"},{"subj":"27920798-21083884-33484644","pred":"source","obj":"MyTest"},{"subj":"27920798-19521496-33484645","pred":"source","obj":"MyTest"},{"subj":"27920798-8875890-33484646","pred":"source","obj":"MyTest"},{"subj":"27920798-18493018-33484647","pred":"source","obj":"MyTest"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93dfec","default":true},{"id":"MyTest","color":"#ecdf93"}]}]}}