PMC:5118444 / 12385-13146 JSONTXT

{"project":"2_test","denotations":[{"id":"27920798-22959562-33402009","span":{"begin":200,"end":204},"obj":"22959562"},{"id":"27920798-24128763-33402010","span":{"begin":206,"end":210},"obj":"24128763"}],"text":"The microarray data (experiments GSE73699, GSE73261, and GSE73159) was processed as follows. Individual CEL files were processed using the UPC function from the SCAN.UPC package in R (Piccolo et al., 2012, 2013). UPC is a quantitative approach for normalizing gene expression data that produces standardized expression values that estimate whether a gene is “active” in a given sample. The program outputs for each gene in a given sample a universal expression code (UPC), a number between 0 and 1 where larger values suggest a greater likelihood that the gene is expressed in the sample. The UPC function was run using the default parameters, and for each tissue a gene was considered to be expressed in the tissue if it had a UPC \u003e 0.5 in at least one sample."}

{"project":"MyTest","denotations":[{"id":"27920798-22959562-33402009","span":{"begin":200,"end":204},"obj":"22959562"},{"id":"27920798-24128763-33402010","span":{"begin":206,"end":210},"obj":"24128763"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":"The microarray data (experiments GSE73699, GSE73261, and GSE73159) was processed as follows. Individual CEL files were processed using the UPC function from the SCAN.UPC package in R (Piccolo et al., 2012, 2013). UPC is a quantitative approach for normalizing gene expression data that produces standardized expression values that estimate whether a gene is “active” in a given sample. The program outputs for each gene in a given sample a universal expression code (UPC), a number between 0 and 1 where larger values suggest a greater likelihood that the gene is expressed in the sample. The UPC function was run using the default parameters, and for each tissue a gene was considered to be expressed in the tissue if it had a UPC \u003e 0.5 in at least one sample."}