> top > docs > PMC:48141 > spans > 39446-40303 > annotations

PMC:48141 / 39446-40303 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7635 800-812 SO:0000006 denotes PCR products
T7634 493-501 SO:0000167 denotes Promoter
T7633 359-363 SO:0000147 denotes Exon
T7632 288-292 SO:0000147 denotes Exon
T7631 155-159 SO:0000147 denotes Exon
T7630 146-153 SO:0000112 denotes primers
T7629 98-105 SO:0001026 denotes genomic
T7628 92-97 NCBITaxon:10088 denotes mouse
T7627 67-71 SO:0000704 denotes gene
T7626 62-66 PR:000010873 denotes Myoc
T7625 56-61 NCBITaxon:10088 denotes mouse
T7624 31-48 SO:0001668 denotes proximal promoter
T7623 17-22 SO:0000147 denotes Exons
T7622 12-16 PR:000010873 denotes Myoc

2_test

Id Subject Object Predicate Lexical cue
11532192-9588210-9964584 853-855 9588210 denotes 22

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7621 856-857 . denotes .
T7620 855-856 -RRB- denotes ]
T7619 853-855 CD denotes 22
T7618 852-853 -LRB- denotes [
T7617 842-851 VBN denotes described
T7616 839-841 IN denotes as
T7615 829-838 VBN denotes sequenced
T7614 825-828 CC denotes and
T7613 813-815 PRP denotes we
T7612 816-824 VBN denotes purified
T7611 800-803 NN denotes PCR
T7610 804-812 NNS denotes products
T7609 796-799 DT denotes The
T7608 795-857 sentence denotes The PCR products we purified and sequenced as described [22].
T7607 794-795 . denotes .
T7606 793-794 -RRB- denotes )
T7605 790-793 NN denotes min
T7604 788-789 CD denotes 2
T7603 784-787 IN denotes for
T7602 780-782 CD denotes 72
T7601 778-780 , denotes ,
T7600 775-778 NN denotes min
T7599 773-774 CD denotes 1
T7598 769-772 IN denotes for
T7597 767-768 NNS denotes °
T7596 765-767 CD denotes 57
T7595 763-765 , denotes ,
T7594 760-763 NN denotes sec
T7593 757-759 CD denotes 40
T7592 753-756 IN denotes for
T7591 751-752 NNS denotes °
T7590 749-751 CD denotes 94
T7589 782-783 NNS denotes °
T7588 748-749 -LRB- denotes (
T7587 746-747 -RRB- denotes )
T7586 744-746 JJ denotes MA
T7585 742-744 , denotes ,
T7584 731-733 NNP denotes MJ
T7583 734-742 NNP denotes Research
T7582 730-731 -LRB- denotes (
T7581 715-722 NNP denotes Thermal
T7580 711-714 NNP denotes PTC
T7579 723-729 NNP denotes Cycler
T7578 709-710 DT denotes a
T7577 706-708 IN denotes in
T7576 695-705 NN denotes polymerase
T7575 685-690 NNP denotes Elmer
T7574 684-685 HYPH denotes -
T7573 691-694 NNP denotes Taq
T7572 678-684 NNP denotes Perkin
T7571 673-677 IN denotes with
T7570 659-672 NN denotes amplification
T7569 656-658 IN denotes of
T7568 649-655 NNS denotes cycles
T7567 646-648 CD denotes 30
T7566 636-645 VBD denotes underwent
T7565 628-635 NNS denotes Samples
T7564 627-795 sentence denotes Samples underwent 30 cycles of amplification with Perkin-Elmer Taq polymerase in a PTC Thermal Cycler (MJ Research, MA) (94° for 40 sec, 57° for 1 min, 72° for 2 min).
T7563 626-627 SYM denotes '
T7562 625-626 CD denotes 3
T7561 624-625 HYPH denotes -
T7560 601-602 HYPH denotes -
T7559 600-601 SYM denotes '
T7558 602-624 NN denotes tcttctggaaagttctcctgca
T7557 599-600 CD denotes 5
T7556 595-598 CC denotes and
T7555 593-594 '' denotes '
T7554 592-593 CD denotes 3
T7553 591-592 HYPH denotes -
T7552 567-568 HYPH denotes -
T7551 566-567 SYM denotes '
T7550 568-591 NN denotes tctgaggatgttcacaggtttat
T7549 565-566 CD denotes 5
T7548 564-627 sentence denotes 5'-tctgaggatgttcacaggtttat-3' and 5'-tcttctggaaagttctcctgca-3'
T7547 563-564 SYM denotes '
T7546 562-563 CD denotes 3
T7545 561-562 HYPH denotes -
T7544 539-540 HYPH denotes -
T7543 538-539 SYM denotes '
T7542 540-561 NN denotes ttcactggaccagcataagga
T7541 537-538 CD denotes 5
T7540 533-536 CC denotes and
T7539 531-532 '' denotes '
T7538 530-531 CD denotes 3
T7537 529-530 HYPH denotes -
T7536 505-506 HYPH denotes -
T7535 504-505 SYM denotes '
T7534 503-504 CD denotes 5
T7533 501-503 : denotes :
T7532 506-529 NN denotes taggagaagtctcattatactgc
T7531 493-501 NN denotes Promoter
T7530 492-564 sentence denotes Promoter: 5'-taggagaagtctcattatactgc-3' and 5'-ttcactggaccagcataagga-3'
T7529 491-492 SYM denotes '
T7528 490-491 CD denotes 3
T7527 489-490 HYPH denotes -
T7526 467-468 HYPH denotes -
T7525 466-467 SYM denotes '
T7524 468-489 NN denotes cggaacttcaccttttctggc
T7523 465-466 CD denotes 5
T7522 461-464 CC denotes and
T7521 459-460 SYM denotes '
T7520 458-459 CD denotes 3
T7519 457-458 HYPH denotes -
T7518 434-435 HYPH denotes -
T7517 433-434 SYM denotes '
T7516 435-457 NN denotes agacattgacttagctgtggat
T7515 432-433 CD denotes 5
T7514 431-492 sentence denotes 5'-agacattgacttagctgtggat-3' and 5'-cggaacttcaccttttctggc-3'
T7513 430-431 SYM denotes '
T7512 429-430 CD denotes 3
T7511 428-429 HYPH denotes -
T7496 286-287 SYM denotes '
T7495 285-286 CD denotes 3
T7491 262-263 HYPH denotes -
T7488 260-261 CD denotes 5
T7486 254-255 SYM denotes '
T7485 253-254 CD denotes 3
T7484 252-253 HYPH denotes -
T7483 228-229 HYPH denotes -
T7482 227-228 SYM denotes '
T7481 392-393 CD denotes 3
T7480 391-392 HYPH denotes -
T7479 369-370 HYPH denotes -
T7478 229-252 NN denotes gaccagctggagacccaaaccag
T7477 368-369 SYM denotes '
T7476 226-227 CD denotes 5
T7475 225-287 sentence denotes 5'-gaccagctggagacccaaaccag-3' and 5'-gctcagatccactgacctaaa-3'
T7474 367-368 CD denotes 5
T7435 116-119 DT denotes the
T7434 110-115 VBG denotes using
T7433 98-105 JJ denotes genomic
T7432 106-109 NN denotes DNA
T7431 92-97 NN denotes mouse
T7430 87-91 IN denotes from
T7429 72-76 VBD denotes were
T7428 62-66 NN denotes Myoc
T7427 56-61 NN denotes mouse
T7426 67-71 NN denotes gene
T7425 52-55 DT denotes the
T7424 49-51 IN denotes of
T7423 31-39 JJ denotes proximal
T7422 40-48 NN denotes promoter
T7421 27-30 DT denotes the
T7420 23-26 CC denotes and
T7419 77-86 VBN denotes amplified
T7418 17-22 NNS denotes Exons
T7417 16-154 sentence denotes Exons and the proximal promoter of the mouse Myoc gene were amplified from mouse genomic DNA using the following combinations of primers:
T7416 12-16 NN denotes Myoc
T7415 9-11 IN denotes of
T7414 0-8 NN denotes Analysis
T7446 163-164 CD denotes 5
T7445 161-163 : denotes :
T7444 160-161 CD denotes 1
T7443 166-188 NN denotes cttgcaggagaactttccagaa
T7442 155-159 NN denotes Exon
T7441 154-225 sentence denotes Exon 1: 5'-cttgcaggagaactttccagaa-3' and 5'-atctcgaaggagattgttatagg-3'
T7440 153-154 : denotes :
T7439 146-153 NNS denotes primers
T7438 143-145 IN denotes of
T7437 120-129 JJ denotes following
T7436 130-142 NNS denotes combinations
T7448 324-325 SYM denotes '
T7447 164-165 SYM denotes '
T7449 326-329 CC denotes and
T7450 330-331 CD denotes 5
T7451 333-355 NN denotes caaaagggagaagtctaacttc
T7452 331-332 SYM denotes '
T7453 165-166 HYPH denotes -
T7454 188-189 HYPH denotes -
T7456 332-333 HYPH denotes -
T7455 189-190 CD denotes 3
T7457 355-356 HYPH denotes -
T7458 190-191 SYM denotes '
T7460 356-357 CD denotes 3
T7459 192-195 CC denotes and
T7461 357-358 SYM denotes '
T7462 196-197 CD denotes 5
T7463 199-222 NN denotes atctcgaaggagattgttatagg
T7465 358-431 sentence denotes Exon 3: 5'-agtcaaggctcacagagctaa-3' and 5'-aagagtagctgctcaccgtgtacaag-3'
T7464 197-198 SYM denotes '
T7466 198-199 HYPH denotes -
T7467 222-223 HYPH denotes -
T7468 359-363 NN denotes Exon
T7469 370-391 NN denotes agtcaaggctcacagagctaa
T7471 364-365 CD denotes 3
T7470 223-224 CD denotes 3
T7473 365-367 : denotes :
T7472 224-225 SYM denotes '
T7487 256-259 CC denotes and
T7489 263-284 NN denotes gctcagatccactgacctaaa
T7490 261-262 SYM denotes '
T7493 393-394 SYM denotes '
T7492 284-285 HYPH denotes -
T7494 395-398 CC denotes and
T7497 287-358 sentence denotes Exon 2: 5'-tgaagccatactttaccaaccat-3' and 5'-caaaagggagaagtctaacttc-3'
T7499 399-400 CD denotes 5
T7498 288-292 NN denotes Exon
T7500 402-428 NN denotes aagagtagctgctcaccgtgtacaag
T7501 400-401 SYM denotes '
T7502 401-402 HYPH denotes -
T7510 323-324 CD denotes 3
T7509 322-323 HYPH denotes -
T7508 298-299 HYPH denotes -
T7507 297-298 SYM denotes '
T7506 296-297 CD denotes 5
T7505 294-296 : denotes :
T7504 293-294 CD denotes 2
T7503 299-322 NN denotes tgaagccatactttaccaaccat
R5750 T7415 T7414 prep of,Analysis
R5751 T7416 T7415 pobj Myoc,of
R5752 T7418 T7419 nsubjpass Exons,amplified
R5753 T7420 T7418 cc and,Exons
R5754 T7421 T7422 det the,promoter
R5755 T7422 T7418 conj promoter,Exons
R5756 T7423 T7422 amod proximal,promoter
R5757 T7424 T7422 prep of,promoter
R5758 T7425 T7426 det the,gene
R5759 T7426 T7424 pobj gene,of
R5760 T7427 T7426 compound mouse,gene
R5761 T7428 T7426 compound Myoc,gene
R5762 T7429 T7419 auxpass were,amplified
R5763 T7430 T7419 prep from,amplified
R5764 T7431 T7432 nmod mouse,DNA
R5765 T7432 T7430 pobj DNA,from
R5766 T7433 T7432 amod genomic,DNA
R5767 T7434 T7419 advcl using,amplified
R5768 T7435 T7436 det the,combinations
R5769 T7436 T7434 dobj combinations,using
R5770 T7437 T7436 amod following,combinations
R5771 T7438 T7436 prep of,combinations
R5772 T7439 T7438 pobj primers,of
R5773 T7440 T7419 punct :,amplified
R5774 T7442 T7443 dep Exon,cttgcaggagaactttccagaa
R5775 T7444 T7442 nummod 1,Exon
R5776 T7445 T7443 punct : ,cttgcaggagaactttccagaa
R5777 T7446 T7443 nummod 5,cttgcaggagaactttccagaa
R5778 T7447 T7446 punct ',5
R5779 T7448 T7503 punct ',tgaagccatactttaccaaccat
R5780 T7449 T7503 cc and,tgaagccatactttaccaaccat
R5781 T7450 T7451 nummod 5,caaaagggagaagtctaacttc
R5782 T7451 T7503 conj caaaagggagaagtctaacttc,tgaagccatactttaccaaccat
R5783 T7452 T7450 punct ',5
R5784 T7453 T7443 punct -,cttgcaggagaactttccagaa
R5785 T7454 T7443 punct -,cttgcaggagaactttccagaa
R5786 T7455 T7443 nummod 3,cttgcaggagaactttccagaa
R5787 T7456 T7451 punct -,caaaagggagaagtctaacttc
R5788 T7457 T7451 punct -,caaaagggagaagtctaacttc
R5789 T7458 T7443 punct ',cttgcaggagaactttccagaa
R5790 T7459 T7443 cc and,cttgcaggagaactttccagaa
R5791 T7460 T7451 nummod 3,caaaagggagaagtctaacttc
R5792 T7461 T7451 punct ',caaaagggagaagtctaacttc
R5793 T7462 T7463 nummod 5,atctcgaaggagattgttatagg
R5794 T7463 T7443 conj atctcgaaggagattgttatagg,cttgcaggagaactttccagaa
R5795 T7464 T7462 punct ',5
R5796 T7466 T7463 punct -,atctcgaaggagattgttatagg
R5797 T7467 T7463 punct -,atctcgaaggagattgttatagg
R5798 T7468 T7469 dep Exon,agtcaaggctcacagagctaa
R5799 T7470 T7463 nummod 3,atctcgaaggagattgttatagg
R5800 T7471 T7468 nummod 3,Exon
R5801 T7472 T7463 punct ',atctcgaaggagattgttatagg
R5802 T7473 T7469 punct : ,agtcaaggctcacagagctaa
R5803 T7474 T7469 nummod 5,agtcaaggctcacagagctaa
R5804 T7476 T7478 nummod 5,gaccagctggagacccaaaccag
R5805 T7477 T7474 punct ',5
R5806 T7479 T7469 punct -,agtcaaggctcacagagctaa
R5807 T7480 T7469 punct -,agtcaaggctcacagagctaa
R5808 T7481 T7469 nummod 3,agtcaaggctcacagagctaa
R5809 T7482 T7476 punct ',5
R5810 T7483 T7478 punct -,gaccagctggagacccaaaccag
R5811 T7484 T7478 punct -,gaccagctggagacccaaaccag
R5812 T7485 T7478 nummod 3,gaccagctggagacccaaaccag
R5813 T7486 T7478 punct ',gaccagctggagacccaaaccag
R5814 T7487 T7478 cc and,gaccagctggagacccaaaccag
R5815 T7488 T7489 nummod 5,gctcagatccactgacctaaa
R5816 T7489 T7478 conj gctcagatccactgacctaaa,gaccagctggagacccaaaccag
R5817 T7490 T7488 punct ',5
R5818 T7491 T7489 punct -,gctcagatccactgacctaaa
R5819 T7492 T7489 punct -,gctcagatccactgacctaaa
R5820 T7493 T7469 punct ',agtcaaggctcacagagctaa
R5821 T7494 T7469 cc and,agtcaaggctcacagagctaa
R5822 T7495 T7489 nummod 3,gctcagatccactgacctaaa
R5823 T7496 T7489 punct ',gctcagatccactgacctaaa
R5824 T7498 T7503 dep Exon,tgaagccatactttaccaaccat
R5825 T7499 T7500 nummod 5,aagagtagctgctcaccgtgtacaag
R5826 T7500 T7469 conj aagagtagctgctcaccgtgtacaag,agtcaaggctcacagagctaa
R5827 T7501 T7499 punct ',5
R5828 T7502 T7500 punct -,aagagtagctgctcaccgtgtacaag
R5829 T7504 T7498 nummod 2,Exon
R5830 T7505 T7503 punct : ,tgaagccatactttaccaaccat
R5831 T7506 T7503 nummod 5,tgaagccatactttaccaaccat
R5832 T7507 T7506 punct ',5
R5833 T7508 T7503 punct -,tgaagccatactttaccaaccat
R5834 T7509 T7503 punct -,tgaagccatactttaccaaccat
R5835 T7510 T7503 nummod 3,tgaagccatactttaccaaccat
R5836 T7511 T7500 punct -,aagagtagctgctcaccgtgtacaag
R5837 T7512 T7500 nummod 3,aagagtagctgctcaccgtgtacaag
R5838 T7513 T7500 punct ',aagagtagctgctcaccgtgtacaag
R5839 T7515 T7516 nummod 5,agacattgacttagctgtggat
R5840 T7517 T7515 punct ',5
R5841 T7518 T7516 punct -,agacattgacttagctgtggat
R5842 T7519 T7516 punct -,agacattgacttagctgtggat
R5843 T7520 T7516 nummod 3,agacattgacttagctgtggat
R5844 T7521 T7516 punct ',agacattgacttagctgtggat
R5845 T7522 T7516 cc and,agacattgacttagctgtggat
R5846 T7523 T7524 nummod 5,cggaacttcaccttttctggc
R5847 T7524 T7516 conj cggaacttcaccttttctggc,agacattgacttagctgtggat
R5848 T7525 T7523 punct ',5
R5849 T7526 T7524 punct -,cggaacttcaccttttctggc
R5850 T7527 T7524 punct -,cggaacttcaccttttctggc
R5851 T7528 T7524 nummod 3,cggaacttcaccttttctggc
R5852 T7529 T7524 punct ',cggaacttcaccttttctggc
R5853 T7531 T7532 dep Promoter,taggagaagtctcattatactgc
R5854 T7533 T7532 punct : ,taggagaagtctcattatactgc
R5855 T7534 T7532 nummod 5,taggagaagtctcattatactgc
R5856 T7535 T7534 punct ',5
R5857 T7536 T7532 punct -,taggagaagtctcattatactgc
R5858 T7537 T7532 punct -,taggagaagtctcattatactgc
R5859 T7538 T7532 nummod 3,taggagaagtctcattatactgc
R5860 T7539 T7532 punct ',taggagaagtctcattatactgc
R5861 T7540 T7532 cc and,taggagaagtctcattatactgc
R5862 T7541 T7542 nummod 5,ttcactggaccagcataagga
R5863 T7542 T7532 conj ttcactggaccagcataagga,taggagaagtctcattatactgc
R5864 T7543 T7542 punct ',ttcactggaccagcataagga
R5865 T7544 T7542 punct -,ttcactggaccagcataagga
R5866 T7545 T7542 punct -,ttcactggaccagcataagga
R5867 T7546 T7542 nummod 3,ttcactggaccagcataagga
R5868 T7547 T7542 punct ',ttcactggaccagcataagga
R5869 T7549 T7550 nummod 5,tctgaggatgttcacaggtttat
R5870 T7551 T7549 punct ',5
R5871 T7552 T7550 punct -,tctgaggatgttcacaggtttat
R5872 T7553 T7550 punct -,tctgaggatgttcacaggtttat
R5873 T7554 T7550 nummod 3,tctgaggatgttcacaggtttat
R5874 T7555 T7550 punct ',tctgaggatgttcacaggtttat
R5875 T7556 T7550 cc and,tctgaggatgttcacaggtttat
R5876 T7557 T7558 nummod 5,tcttctggaaagttctcctgca
R5877 T7558 T7550 conj tcttctggaaagttctcctgca,tctgaggatgttcacaggtttat
R5878 T7559 T7557 punct ',5
R5879 T7560 T7558 punct -,tcttctggaaagttctcctgca
R5880 T7561 T7558 punct -,tcttctggaaagttctcctgca
R5881 T7562 T7558 nummod 3,tcttctggaaagttctcctgca
R5882 T7563 T7558 punct ',tcttctggaaagttctcctgca
R5883 T7565 T7566 nsubj Samples,underwent
R5884 T7567 T7568 nummod 30,cycles
R5885 T7568 T7566 dobj cycles,underwent
R5886 T7569 T7568 prep of,cycles
R5887 T7570 T7569 pobj amplification,of
R5888 T7571 T7568 prep with,cycles
R5889 T7572 T7573 compound Perkin,Taq
R5890 T7573 T7576 compound Taq,polymerase
R5891 T7574 T7573 punct -,Taq
R5892 T7575 T7573 compound Elmer,Taq
R5893 T7576 T7571 pobj polymerase,with
R5894 T7577 T7576 prep in,polymerase
R5895 T7578 T7579 det a,Cycler
R5896 T7579 T7577 pobj Cycler,in
R5897 T7580 T7579 compound PTC,Cycler
R5898 T7581 T7579 compound Thermal,Cycler
R5899 T7582 T7583 punct (,Research
R5900 T7583 T7576 parataxis Research,polymerase
R5901 T7584 T7583 compound MJ,Research
R5902 T7585 T7583 punct ", ",Research
R5903 T7586 T7583 npadvmod MA,Research
R5904 T7587 T7583 punct ),Research
R5905 T7588 T7589 punct (,°
R5906 T7589 T7576 parataxis °,polymerase
R5907 T7590 T7591 nummod 94,°
R5908 T7591 T7589 dep °,°
R5909 T7592 T7591 prep for,°
R5910 T7593 T7594 nummod 40,sec
R5911 T7594 T7592 pobj sec,for
R5912 T7595 T7589 punct ", ",°
R5913 T7596 T7597 nummod 57,°
R5914 T7597 T7589 dep °,°
R5915 T7598 T7597 prep for,°
R5916 T7599 T7600 nummod 1,min
R5917 T7600 T7598 pobj min,for
R5918 T7601 T7589 punct ", ",°
R5919 T7602 T7589 nummod 72,°
R5920 T7603 T7589 prep for,°
R5921 T7604 T7605 nummod 2,min
R5922 T7605 T7603 pobj min,for
R5923 T7606 T7589 punct ),°
R5924 T7607 T7566 punct .,underwent
R5925 T7609 T7610 det The,products
R5926 T7610 T7612 dep products,purified
R5927 T7611 T7610 compound PCR,products
R5928 T7613 T7612 nsubj we,purified
R5929 T7614 T7612 cc and,purified
R5930 T7615 T7612 conj sequenced,purified
R5931 T7616 T7617 mark as,described
R5932 T7617 T7612 advcl described,purified
R5933 T7618 T7619 punct [,22
R5934 T7619 T7612 parataxis 22,purified
R5935 T7620 T7619 punct ],22
R5936 T7621 T7612 punct .,purified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7651 800-812 SO_EXT:0000006 denotes PCR products
T7650 695-705 GO_EXT:polymerase denotes polymerase
T7649 493-501 SO_EXT:0000167 denotes Promoter
T7648 359-363 SO_EXT:0000147 denotes Exon
T7647 288-292 SO_EXT:0000147 denotes Exon
T7646 155-159 SO_EXT:0000147 denotes Exon
T7645 146-153 SO_EXT:0000112 denotes primers
T7644 106-109 CHEBI_SO_EXT:DNA denotes DNA
T7643 98-109 SO_EXT:genomic_DNA denotes genomic DNA
T7642 92-97 NCBITaxon:10088 denotes mouse
T7641 67-71 SO_EXT:0000704 denotes gene
T7640 62-66 PR_EXT:000010873 denotes Myoc
T7639 56-61 NCBITaxon:10088 denotes mouse
T7638 31-48 SO_EXT:0001668 denotes proximal promoter
T7637 17-22 SO_EXT:0000147 denotes Exons
T7636 12-16 PR_EXT:000010873 denotes Myoc