PMC:4502371 / 8398-8909 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/4502371","sourcedb":"PMC","sourceid":"4502371","source_url":"https://www.ncbi.nlm.nih.gov/pmc/4502371","text":"The genomes of the mutant strains after outcrossing twice against N2 were sequenced using Illumina sequencing. Sequences were aligned to the WS220 reference C. elegans genome with bowtie2 (Langmead and Salzberg 2012), variants called with the samtools/bcftools suite (Li et al. 2009), and effects on gene function predicted and variants filtered with snpEff and SnpSift (Cingolani et al. 2012). Further specific analyses used vcftools (Danecek et al. 2011), bedtools (Quinlan and Hall 2010), and custom scripts.","tracks":[{"project":"2_test","denotations":[{"id":"25917920-22388286-43299623","span":{"begin":211,"end":215},"obj":"22388286"},{"id":"25917920-19505943-43299624","span":{"begin":278,"end":282},"obj":"19505943"},{"id":"25917920-22728672-43299625","span":{"begin":388,"end":392},"obj":"22728672"},{"id":"25917920-21653522-43299626","span":{"begin":451,"end":455},"obj":"21653522"},{"id":"25917920-20110278-43299627","span":{"begin":485,"end":489},"obj":"20110278"}],"attributes":[{"subj":"25917920-22388286-43299623","pred":"source","obj":"2_test"},{"subj":"25917920-19505943-43299624","pred":"source","obj":"2_test"},{"subj":"25917920-22728672-43299625","pred":"source","obj":"2_test"},{"subj":"25917920-21653522-43299626","pred":"source","obj":"2_test"},{"subj":"25917920-20110278-43299627","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93dbec","default":true}]}]}}