PMC:4502367 / 36735-40442 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/4502367","sourcedb":"PMC","sourceid":"4502367","source_url":"https://www.ncbi.nlm.nih.gov/pmc/4502367","text":"Table 3 Gene models with protein domains associated with transposable elements\nProtein ID Length (aa) Domain Name Domain Description Interpro or Pfam Accession No. Overlapping Repeat Family RNA-seq Support\nZt09_chr_1_00001 143 RVT_1 Reverse-transcriptase (RNA-dependent DNA polymerase) PF00078 RIL_element2_ZTIPO323 —\nZt09_chr_1_00017 272 DDE_Tnp_4 DDE superfamily endonuclease PF13359 DTH_element5_ZTIPO323 —\nZt09_chr_1_01076 477 DDE_3 DDE superfamily endonuclease PF13358 DTT_element10_ZTIPO323 Yes\nZt09_chr_2_00093 477 DDE_3 DDE superfamily endonuclease PF13358 DTT_element10_ZTIPO323 —\nZt09_chr_2_00258 409 DDE_Tnp_1_7 Transposase IS4 PF13843 DTX_element1_ZPST04IR55 Yes\nZt09_chr_2_00383 648 DDE_1 DDE superfamily endonuclease PF03184 DTT_element1_ZTIPO323 Yes\nZt09_chr_2_00481 532 Chromo Chromo (CHRromatin Organization MOdifier) domain PF00385 RLG_element5_ZPST04IR55 —\nZt09_chr_2_00619 272 RVT_2 Reverse-transcriptase (RNA-dependent DNA polymerase) PF07727 RLC_element3_ZTIPO323 —\nZt09_chr_2_00906 219 DDE_1 DDE superfamily endonuclease PF03184 DTT_element5_ZTIPO323 Yes\nZt09_chr_2_00907 269 DDE_1 DDE superfamily endonuclease PF03184 DTT_element5_ZTIPO323 Yes\nZt09_chr_3_00204 734 RNaseH-like_dom Ribonuclease H-like domain IPR012337 DTA_element2_ZTIPO323 Yes\nZt09_chr_3_00229 349 DDE_3 DDE superfamily endonuclease PF13358 DTT_element14_ZTIPO323 Yes\nZt09_chr_4_00051 195 DDE_3 DDE superfamily endonuclease PF13358 DTT_element4_ZB163 —\nZt09_chr_4_00288 371 RNaseH-like_dom Ribonuclease H-like domain IPR012337 DTA_element3_ZTIPO323 Yes\nZt09_chr_5_00137 477 DDE_3 DDE superfamily endonuclease PF13358 DTT_element10_ZTIPO323 Yes\nZt09_chr_7_00478 338 RNaseH-like_dom Ribonuclease H-like domain IPR012337 DTA_element6_ZTIPO323 Yes\nZt09_chr_7_00479 108 RNaseH-like_dom Ribonuclease H-like domain IPR012337 DTA_element6_ZTIPO323 Yes\nZt09_chr_9_00003 1506 RVT_1 Reverse-transcriptase (RNA-dependent DNA polymerase) PF00078 RIL_element2_ZTIPO323 —\nZt09_chr_9_00154 621 DDE_1 DDE superfamily endonuclease PF03184 DTT_element1_ZTIPO323 Yes\nZt09_chr_9_00557 1061 rve Integrase core domain PF00665 RLC_element7_ZTIPO323 Yes\nZt09_chr_9_00615 458 DDE_Tnp_1_7 Transposase IS4 PF13843 DTX_element1_ZAST11IR611 Yes\nZt09_chr_10_00001 218 RVT_2 Reverse-transcriptase (RNA-dependent DNA polymerase) PF07727 RLC_element7_ZTIPO323 —\nZt09_chr_11_00364 162 Chromo Chromo (CHRromatin Organization MOdifier) domain PF00385 RLG_element7_ZPST04IR55 —\nZt09_chr_13_00054 869 DDE_3 DDE superfamily endonuclease PF13358 DTT_element10_ZTIPO323 Yes\nZt09_chr_13_00057 150 RVT_2 Reverse-transcriptase (RNA-dependent DNA polymerase) PF07727 RLC_element2_ZTIPO323 —\nZt09_chr_13_00271 480 RNaseH-like_dom Ribonuclease H-like domain IPR012337 DTA_element1_ZTIPO323 Yes\nZt09_chr_17_00004 876 RVT_1 Reverse-transcriptase (RNA-dependent DNA polymerase) PF00078 RIL_element2_ZTIPO323 —\nZt09_chr_17_00088 523 RVT_1 Reverse-transcriptase (RNA-dependent DNA polymerase) PF00078 RIL_element2_ZTIPO323 —\nZt09_chr_18_00008 750 RNaseH-like_dom Ribonuclease H-like domain IPR012337 NoCat_element60_ZAST11IR611 —\nZt09_chr_19_00003 169 RVT_2 Reverse-transcriptase (RNA-dependent DNA polymerase) PF07727 RLC_element5_ZTIPO323 —\nZt09_chr_19_00040 947 RVT_2 Reverse-transcriptase (RNA-dependent DNA polymerase) PF07727 RLC_element9_ZTIPO323 —\nZt09_chr_19_00041 107 UBN2_3 gag-polypeptide of LTR copia-type PF14244 RLC_element9_ZTIPO323 —\nZt09_chr_21_00003 1609 RVT_1 Reverse-transcriptase (RNA-dependent DNA polymerase) PF00078 RLG_element9_ZTIPO323 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