> top > docs > PMC:441373 > spans > 9992-13162 > annotations

PMC:441373 / 9992-13162 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2677 0-16 NN denotes Characterization
T2678 17-19 IN denotes of
T2679 20-30 NN denotes vertebrate
T2680 31-36 NN denotes TACC3
T2681 37-48 NNS denotes orthologues
T2682 48-234 sentence denotes Based upon current functional analysis, the characterization of TACC3 orthologues is likely to be pivotal to understanding the sequence and functional evolution of the TACC gene family.
T2683 49-54 VBN denotes Based
T2684 131-133 VBZ denotes is
T2685 55-59 IN denotes upon
T2686 60-67 JJ denotes current
T2687 79-87 NN denotes analysis
T2688 68-78 JJ denotes functional
T2689 87-89 , denotes ,
T2690 89-92 DT denotes the
T2691 93-109 NN denotes characterization
T2692 110-112 IN denotes of
T2693 113-118 NN denotes TACC3
T2694 119-130 NNS denotes orthologues
T2695 134-140 JJ denotes likely
T2696 141-143 TO denotes to
T2697 144-146 VB denotes be
T2698 147-154 JJ denotes pivotal
T2699 155-157 IN denotes to
T2700 158-171 VBG denotes understanding
T2701 172-175 DT denotes the
T2702 176-184 NN denotes sequence
T2703 185-188 CC denotes and
T2704 189-199 JJ denotes functional
T2705 200-209 NN denotes evolution
T2706 210-212 IN denotes of
T2707 213-216 DT denotes the
T2708 227-233 NN denotes family
T2709 217-221 NN denotes TACC
T2710 222-226 NN denotes gene
T2711 233-234 . denotes .
T2712 234-363 sentence denotes As indicated below, the chromosomal region containing the TACC gene precursors was duplicated twice during vertebrate evolution.
T2713 235-237 IN denotes As
T2714 238-247 VBN denotes indicated
T2715 318-328 VBN denotes duplicated
T2716 248-253 RB denotes below
T2717 253-255 , denotes ,
T2718 255-258 DT denotes the
T2719 271-277 NN denotes region
T2720 259-270 JJ denotes chromosomal
T2721 278-288 VBG denotes containing
T2722 289-292 DT denotes the
T2723 303-313 NNS denotes precursors
T2724 293-297 NN denotes TACC
T2725 298-302 NN denotes gene
T2726 314-317 VBD denotes was
T2727 329-334 RB denotes twice
T2728 335-341 IN denotes during
T2729 342-352 NN denotes vertebrate
T2730 353-362 NN denotes evolution
T2731 362-363 . denotes .
T2732 363-635 sentence denotes Although the analysis of T. rubripes, rodents and humans so far suggests that the vertebrate TACC3 precursor was not included in the second round of genomic duplication, it could not be excluded that a TACC4 gene may have been lost during the evolution of these lineages.
T2733 364-372 IN denotes Although
T2734 428-436 VBZ denotes suggests
T2735 373-376 DT denotes the
T2736 377-385 NN denotes analysis
T2737 386-388 IN denotes of
T2738 389-391 NNP denotes T.
T2739 392-400 NNP denotes rubripes
T2740 400-402 , denotes ,
T2741 402-409 NNS denotes rodents
T2742 410-413 CC denotes and
T2743 414-420 NNS denotes humans
T2744 421-423 RB denotes so
T2745 424-427 RB denotes far
T2746 550-558 VBN denotes excluded
T2747 437-441 IN denotes that
T2748 481-489 VBN denotes included
T2749 442-445 DT denotes the
T2750 463-472 NN denotes precursor
T2751 446-456 NN denotes vertebrate
T2752 457-462 NN denotes TACC3
T2753 473-476 VBD denotes was
T2754 477-480 RB denotes not
T2755 490-492 IN denotes in
T2756 493-496 DT denotes the
T2757 504-509 NN denotes round
T2758 497-503 JJ denotes second
T2759 510-512 IN denotes of
T2760 513-520 JJ denotes genomic
T2761 521-532 NN denotes duplication
T2762 532-534 , denotes ,
T2763 534-536 PRP denotes it
T2764 537-542 MD denotes could
T2765 543-546 RB denotes not
T2766 547-549 VB denotes be
T2767 559-563 IN denotes that
T2768 591-595 VBN denotes lost
T2769 564-565 DT denotes a
T2770 572-576 NN denotes gene
T2771 566-571 NN denotes TACC4
T2772 577-580 MD denotes may
T2773 581-585 VB denotes have
T2774 586-590 VBN denotes been
T2775 596-602 IN denotes during
T2776 603-606 DT denotes the
T2777 607-616 NN denotes evolution
T2778 617-619 IN denotes of
T2779 620-625 DT denotes these
T2780 626-634 NNS denotes lineages
T2781 634-635 . denotes .
T2782 635-742 sentence denotes The cloning of a new member of the TACC family in Oryctolagus cuniculus has added to this controversy [9].
T2783 636-639 DT denotes The
T2784 640-647 NN denotes cloning
T2785 712-717 VBN denotes added
T2786 648-650 IN denotes of
T2787 651-652 DT denotes a
T2788 657-663 NN denotes member
T2789 653-656 JJ denotes new
T2790 664-666 IN denotes of
T2791 667-670 DT denotes the
T2792 676-682 NN denotes family
T2793 671-675 NN denotes TACC
T2794 683-685 IN denotes in
T2795 686-697 NNP denotes Oryctolagus
T2796 698-707 NNP denotes cuniculus
T2797 708-711 VBZ denotes has
T2798 718-720 IN denotes to
T2799 721-725 DT denotes this
T2800 726-737 NN denotes controversy
T2801 738-739 -LRB- denotes [
T2802 739-740 CD denotes 9
T2803 740-741 -RRB- denotes ]
T2804 741-742 . denotes .
T2805 742-836 sentence denotes Designated TACC4, the 1.5 kb cDNA was highly related, but proposed to be distinct from TACC3.
T2806 743-753 VBN denotes Designated
T2807 777-780 VBD denotes was
T2808 754-759 NN denotes TACC4
T2809 759-761 , denotes ,
T2810 761-764 DT denotes the
T2811 772-776 NN denotes cDNA
T2812 765-768 CD denotes 1.5
T2813 769-771 NN denotes kb
T2814 781-787 RB denotes highly
T2815 788-795 VBN denotes related
T2816 795-797 , denotes ,
T2817 797-800 CC denotes but
T2818 801-809 VBN denotes proposed
T2819 810-812 TO denotes to
T2820 813-815 VB denotes be
T2821 816-824 JJ denotes distinct
T2822 825-829 IN denotes from
T2823 830-835 NN denotes TACC3
T2824 835-836 . denotes .
T2825 836-978 sentence denotes However, Northern blot data suggested that this gene produces a single 2.3 kb transcript [9], indicating that the cloned cDNA was incomplete.
T2826 837-844 RB denotes However
T2827 865-874 VBD denotes suggested
T2828 844-846 , denotes ,
T2829 846-854 NNP denotes Northern
T2830 855-859 NN denotes blot
T2831 860-864 NNS denotes data
T2832 875-879 IN denotes that
T2833 890-898 VBZ denotes produces
T2834 880-884 DT denotes this
T2835 885-889 NN denotes gene
T2836 899-900 DT denotes a
T2837 915-925 NN denotes transcript
T2838 901-907 JJ denotes single
T2839 908-911 CD denotes 2.3
T2840 912-914 NN denotes kb
T2841 926-927 -LRB- denotes [
T2842 927-928 CD denotes 9
T2843 928-929 -RRB- denotes ]
T2844 929-931 , denotes ,
T2845 931-941 VBG denotes indicating
T2846 942-946 IN denotes that
T2847 963-966 VBD denotes was
T2848 947-950 DT denotes the
T2849 958-962 NN denotes cDNA
T2850 951-957 VBN denotes cloned
T2851 967-977 JJ denotes incomplete
T2852 977-978 . denotes .
T2853 978-1130 sentence denotes The degree of similarity to the published sequence of human and mouse TACC3 suggested to us that TACC4 actually represents a partial rabbit TACC3 cDNA.
T2854 979-982 DT denotes The
T2855 983-989 NN denotes degree
T2856 1055-1064 VBD denotes suggested
T2857 990-992 IN denotes of
T2858 993-1003 NN denotes similarity
T2859 1004-1006 IN denotes to
T2860 1007-1010 DT denotes the
T2861 1021-1029 NN denotes sequence
T2862 1011-1020 VBN denotes published
T2863 1030-1032 IN denotes of
T2864 1033-1038 JJ denotes human
T2865 1049-1054 NN denotes TACC3
T2866 1039-1042 CC denotes and
T2867 1043-1048 NN denotes mouse
T2868 1065-1067 IN denotes to
T2869 1068-1070 PRP denotes us
T2870 1071-1075 IN denotes that
T2871 1091-1101 VBZ denotes represents
T2872 1076-1081 NN denotes TACC4
T2873 1082-1090 RB denotes actually
T2874 1102-1103 DT denotes a
T2875 1125-1129 NN denotes cDNA
T2876 1104-1111 JJ denotes partial
T2877 1112-1118 NN denotes rabbit
T2878 1119-1124 NN denotes TACC3
T2879 1129-1130 . denotes .
T2880 1130-1267 sentence denotes To test this hypothesis, we set out to clone the complete rabbit TACC3 sequence, based upon the known features of human and mouse TACC3.
T2881 1131-1133 TO denotes To
T2882 1134-1138 VB denotes test
T2883 1159-1162 VBD denotes set
T2884 1139-1143 DT denotes this
T2885 1144-1154 NN denotes hypothesis
T2886 1154-1156 , denotes ,
T2887 1156-1158 PRP denotes we
T2888 1163-1166 RP denotes out
T2889 1167-1169 TO denotes to
T2890 1170-1175 VB denotes clone
T2891 1176-1179 DT denotes the
T2892 1202-1210 NN denotes sequence
T2893 1180-1188 JJ denotes complete
T2894 1189-1195 NN denotes rabbit
T2895 1196-1201 NN denotes TACC3
T2896 1210-1212 , denotes ,
T2897 1212-1217 VBN denotes based
T2898 1218-1222 IN denotes upon
T2899 1223-1226 DT denotes the
T2900 1233-1241 NNS denotes features
T2901 1227-1232 JJ denotes known
T2902 1242-1244 IN denotes of
T2903 1245-1250 JJ denotes human
T2904 1261-1266 NN denotes TACC3
T2905 1251-1254 CC denotes and
T2906 1255-1260 NN denotes mouse
T2907 1266-1267 . denotes .
T2908 1267-1412 sentence denotes We have previously noted that the N-terminal and C-terminal regions of the human and mouse TACC3 proteins are highly conserved ([2], see below).
T2909 1268-1270 PRP denotes We
T2910 1287-1292 VBN denotes noted
T2911 1271-1275 VBP denotes have
T2912 1276-1286 RB denotes previously
T2913 1293-1297 IN denotes that
T2914 1374-1377 VBP denotes are
T2915 1298-1301 DT denotes the
T2916 1328-1335 NNS denotes regions
T2917 1302-1303 NN denotes N
T2918 1304-1312 JJ denotes terminal
T2919 1303-1304 HYPH denotes -
T2920 1313-1316 CC denotes and
T2921 1317-1318 NN denotes C
T2922 1319-1327 JJ denotes terminal
T2923 1318-1319 HYPH denotes -
T2924 1336-1338 IN denotes of
T2925 1339-1342 DT denotes the
T2926 1365-1373 NN denotes proteins
T2927 1343-1348 JJ denotes human
T2928 1349-1352 CC denotes and
T2929 1353-1358 NN denotes mouse
T2930 1359-1364 NN denotes TACC3
T2931 1378-1384 RB denotes highly
T2932 1385-1394 VBN denotes conserved
T2933 1395-1396 -LRB- denotes (
T2934 1397-1398 CD denotes 2
T2935 1396-1397 -LRB- denotes [
T2936 1398-1399 -RRB- denotes ]
T2937 1399-1401 , denotes ,
T2938 1401-1404 VBP denotes see
T2939 1405-1410 RB denotes below
T2940 1410-1411 -RRB- denotes )
T2941 1411-1412 . denotes .
T2942 1412-1675 sentence denotes Therefore, based upon the sequence identity between these genes, we designed a consensus oligonucleotide primer, T3con2, that would be suitable for the identification of the region containing the initiator methionine of the TACC3 cDNAs from primates and rodents.
T2943 1413-1422 RB denotes Therefore
T2944 1481-1489 VBD denotes designed
T2945 1422-1424 , denotes ,
T2946 1424-1429 VBN denotes based
T2947 1430-1434 IN denotes upon
T2948 1435-1438 DT denotes the
T2949 1448-1456 NN denotes identity
T2950 1439-1447 NN denotes sequence
T2951 1457-1464 IN denotes between
T2952 1465-1470 DT denotes these
T2953 1471-1476 NNS denotes genes
T2954 1476-1478 , denotes ,
T2955 1478-1480 PRP denotes we
T2956 1490-1491 DT denotes a
T2957 1518-1524 NN denotes primer
T2958 1492-1501 NN denotes consensus
T2959 1502-1517 NN denotes oligonucleotide
T2960 1524-1526 , denotes ,
T2961 1526-1532 NN denotes T3con2
T2962 1532-1534 , denotes ,
T2963 1534-1538 WDT denotes that
T2964 1545-1547 VB denotes be
T2965 1539-1544 MD denotes would
T2966 1548-1556 JJ denotes suitable
T2967 1557-1560 IN denotes for
T2968 1561-1564 DT denotes the
T2969 1565-1579 NN denotes identification
T2970 1580-1582 IN denotes of
T2971 1583-1586 DT denotes the
T2972 1587-1593 NN denotes region
T2973 1594-1604 VBG denotes containing
T2974 1605-1608 DT denotes the
T2975 1619-1629 NN denotes methionine
T2976 1609-1618 NN denotes initiator
T2977 1630-1632 IN denotes of
T2978 1633-1636 DT denotes the
T2979 1643-1648 NNS denotes cDNAs
T2980 1637-1642 NN denotes TACC3
T2981 1649-1653 IN denotes from
T2982 1654-1662 NNS denotes primates
T2983 1663-1666 CC denotes and
T2984 1667-1674 NNS denotes rodents
T2985 1674-1675 . denotes .
T2986 1675-1859 sentence denotes Using this primer, in combination with the TACC4-specific RACE primer (RACE2), initially used by Steadman et al [9], we isolated a 1.5 kb PCR product from rabbit brain cDNA by rt-PCR.
T2987 1676-1681 VBG denotes Using
T2988 1796-1804 VBN denotes isolated
T2989 1682-1686 DT denotes this
T2990 1687-1693 NN denotes primer
T2991 1693-1695 , denotes ,
T2992 1695-1697 IN denotes in
T2993 1698-1709 NN denotes combination
T2994 1710-1714 IN denotes with
T2995 1715-1718 DT denotes the
T2996 1739-1745 NN denotes primer
T2997 1719-1724 NN denotes TACC4
T2998 1725-1733 JJ denotes specific
T2999 1724-1725 HYPH denotes -
T3000 1734-1738 NN denotes RACE
T3001 1746-1747 -LRB- denotes (
T3002 1747-1752 NN denotes RACE2
T3003 1752-1753 -RRB- denotes )
T3004 1753-1755 , denotes ,
T3005 1755-1764 RB denotes initially
T3006 1765-1769 VBN denotes used
T3007 1770-1772 IN denotes by
T3008 1773-1781 NNP denotes Steadman
T3009 1782-1784 FW denotes et
T3010 1785-1787 FW denotes al
T3011 1788-1789 -LRB- denotes [
T3012 1789-1790 CD denotes 9
T3013 1790-1791 -RRB- denotes ]
T3014 1791-1793 , denotes ,
T3015 1793-1795 PRP denotes we
T3016 1805-1806 DT denotes a
T3017 1818-1825 NN denotes product
T3018 1807-1810 CD denotes 1.5
T3019 1811-1813 NN denotes kb
T3020 1814-1817 NN denotes PCR
T3021 1826-1830 IN denotes from
T3022 1831-1837 NN denotes rabbit
T3023 1844-1848 NN denotes cDNA
T3024 1838-1843 NN denotes brain
T3025 1849-1851 IN denotes by
T3026 1852-1854 NN denotes rt
T3027 1855-1858 NN denotes PCR
T3028 1854-1855 HYPH denotes -
T3029 1858-1859 . denotes .
T3030 1859-2058 sentence denotes In combination with 3'RACE, this generated a consensus cDNA of 2283 bp which corresponds to the transcript size of 2.3 kb detected by the "TACC4" sequence reported in Figure 4 of Steadman et al [9].
T3031 1860-1862 IN denotes In
T3032 1893-1902 VBD denotes generated
T3033 1863-1874 NN denotes combination
T3034 1875-1879 IN denotes with
T3035 1880-1881 CD denotes 3
T3036 1882-1886 NN denotes RACE
T3037 1881-1882 SYM denotes '
T3038 1886-1888 , denotes ,
T3039 1888-1892 DT denotes this
T3040 1903-1904 DT denotes a
T3041 1915-1919 NN denotes cDNA
T3042 1905-1914 NN denotes consensus
T3043 1920-1922 IN denotes of
T3044 1923-1927 CD denotes 2283
T3045 1928-1930 NN denotes bp
T3046 1931-1936 WDT denotes which
T3047 1937-1948 VBZ denotes corresponds
T3048 1949-1951 IN denotes to
T3049 1952-1955 DT denotes the
T3050 1967-1971 NN denotes size
T3051 1956-1966 NN denotes transcript
T3052 1972-1974 IN denotes of
T3053 1975-1978 CD denotes 2.3
T3054 1979-1981 NN denotes kb
T3055 1982-1990 VBN denotes detected
T3056 1991-1993 IN denotes by
T3057 1994-1997 DT denotes the
T3058 2006-2014 NN denotes sequence
T3059 1998-1999 `` denotes "
T3060 1999-2004 NN denotes TACC4
T3061 2004-2005 '' denotes "
T3062 2015-2023 VBN denotes reported
T3063 2024-2026 IN denotes in
T3064 2027-2033 NN denotes Figure
T3065 2034-2035 CD denotes 4
T3066 2036-2038 IN denotes of
T3067 2039-2047 NNP denotes Steadman
T3068 2048-2050 FW denotes et
T3069 2051-2053 FW denotes al
T3070 2054-2055 -LRB- denotes [
T3071 2055-2056 CD denotes 9
T3072 2056-2057 -RRB- denotes ]
T3073 2057-2058 . denotes .
T3074 2058-2390 sentence denotes Thus, while it remains possible that the "TACC4" sequence is an alternative splice product, or is the product of reduplication of the TACC3 gene (events that would be specific to the rabbit), the only transcript detected in rabbit RNA corresponds to the predicted transcript size of the TACC3 sequence that we have identified here.
T3075 2059-2063 RB denotes Thus
T3076 2294-2305 VBZ denotes corresponds
T3077 2063-2065 , denotes ,
T3078 2065-2070 IN denotes while
T3079 2074-2081 VBZ denotes remains
T3080 2071-2073 PRP denotes it
T3081 2082-2090 JJ denotes possible
T3082 2091-2095 IN denotes that
T3083 2117-2119 VBZ denotes is
T3084 2096-2099 DT denotes the
T3085 2108-2116 NN denotes sequence
T3086 2100-2101 `` denotes "
T3087 2101-2106 NN denotes TACC4
T3088 2106-2107 '' denotes "
T3089 2120-2122 DT denotes an
T3090 2142-2149 NN denotes product
T3091 2123-2134 JJ denotes alternative
T3092 2135-2141 NN denotes splice
T3093 2149-2151 , denotes ,
T3094 2151-2153 CC denotes or
T3095 2154-2156 VBZ denotes is
T3096 2157-2160 DT denotes the
T3097 2161-2168 NN denotes product
T3098 2169-2171 IN denotes of
T3099 2172-2185 NN denotes reduplication
T3100 2186-2188 IN denotes of
T3101 2189-2192 DT denotes the
T3102 2199-2203 NN denotes gene
T3103 2193-2198 NN denotes TACC3
T3104 2204-2205 -LRB- denotes (
T3105 2205-2211 NNS denotes events
T3106 2212-2216 WDT denotes that
T3107 2223-2225 VB denotes be
T3108 2217-2222 MD denotes would
T3109 2226-2234 JJ denotes specific
T3110 2235-2237 IN denotes to
T3111 2238-2241 DT denotes the
T3112 2242-2248 NN denotes rabbit
T3113 2248-2249 -RRB- denotes )
T3114 2249-2251 , denotes ,
T3115 2251-2254 DT denotes the
T3116 2260-2270 NN denotes transcript
T3117 2255-2259 JJ denotes only
T3118 2271-2279 VBN denotes detected
T3119 2280-2282 IN denotes in
T3120 2283-2289 NN denotes rabbit
T3121 2290-2293 NN denotes RNA
T3122 2306-2308 IN denotes to
T3123 2309-2312 DT denotes the
T3124 2334-2338 NN denotes size
T3125 2313-2322 VBN denotes predicted
T3126 2323-2333 NN denotes transcript
T3127 2339-2341 IN denotes of
T3128 2342-2345 DT denotes the
T3129 2352-2360 NN denotes sequence
T3130 2346-2351 NN denotes TACC3
T3131 2361-2365 WDT denotes that
T3132 2374-2384 VBN denotes identified
T3133 2366-2368 PRP denotes we
T3134 2369-2373 VBP denotes have
T3135 2385-2389 RB denotes here
T3136 2389-2390 . denotes .
T3137 2390-2693 sentence denotes Furthermore, the string of nucleotides found at the 5' end of the "TACC4" sequence is also found at the 5' ends of a number of cDNA sequences (e.g. U82468, NM_023500), that were isolated by 5'RACE, suggesting that they may correspond to an artefact of the 5'RACE methodology used in their construction.
T3138 2391-2402 RB denotes Furthermore
T3139 2482-2487 VBN denotes found
T3140 2402-2404 , denotes ,
T3141 2404-2407 DT denotes the
T3142 2408-2414 NN denotes string
T3143 2415-2417 IN denotes of
T3144 2418-2429 NNS denotes nucleotides
T3145 2430-2435 VBN denotes found
T3146 2436-2438 IN denotes at
T3147 2439-2442 DT denotes the
T3148 2446-2449 NN denotes end
T3149 2443-2444 CD denotes 5
T3150 2444-2445 SYM denotes '
T3151 2450-2452 IN denotes of
T3152 2453-2456 DT denotes the
T3153 2465-2473 NN denotes sequence
T3154 2457-2458 `` denotes "
T3155 2458-2463 NN denotes TACC4
T3156 2463-2464 '' denotes "
T3157 2474-2476 VBZ denotes is
T3158 2477-2481 RB denotes also
T3159 2488-2490 IN denotes at
T3160 2491-2494 DT denotes the
T3161 2498-2502 NNS denotes ends
T3162 2495-2496 CD denotes 5
T3163 2496-2497 SYM denotes '
T3164 2503-2505 IN denotes of
T3165 2506-2507 DT denotes a
T3166 2508-2514 NN denotes number
T3167 2515-2517 IN denotes of
T3168 2518-2522 NN denotes cDNA
T3169 2523-2532 NNS denotes sequences
T3170 2533-2534 -LRB- denotes (
T3171 2534-2538 FW denotes e.g.
T3172 2547-2556 NN denotes NM_023500
T3173 2539-2545 NN denotes U82468
T3174 2545-2547 , denotes ,
T3175 2556-2557 -RRB- denotes )
T3176 2557-2559 , denotes ,
T3177 2559-2563 WDT denotes that
T3178 2569-2577 VBN denotes isolated
T3179 2564-2568 VBD denotes were
T3180 2578-2580 IN denotes by
T3181 2581-2582 CD denotes 5
T3182 2583-2587 NN denotes RACE
T3183 2582-2583 SYM denotes '
T3184 2587-2589 , denotes ,
T3185 2589-2599 VBG denotes suggesting
T3186 2600-2604 IN denotes that
T3187 2614-2624 VB denotes correspond
T3188 2605-2609 PRP denotes they
T3189 2610-2613 MD denotes may
T3190 2625-2627 IN denotes to
T3191 2628-2630 DT denotes an
T3192 2631-2639 NN denotes artefact
T3193 2640-2642 IN denotes of
T3194 2643-2646 DT denotes the
T3195 2654-2665 NN denotes methodology
T3196 2647-2648 CD denotes 5
T3197 2648-2649 SYM denotes '
T3198 2649-2653 NN denotes RACE
T3199 2666-2670 VBN denotes used
T3200 2671-2673 IN denotes in
T3201 2674-2679 PRP$ denotes their
T3202 2680-2692 NN denotes construction
T3203 2692-2693 . denotes .
T3204 2693-3061 sentence denotes The rabbit "TACC4" and the rabbit TACC3 sequence that we have isolated are also found on the same branch of the TACC phylogenetic tree with the other TACC3 orthologues, including maskin (Xenopus laevis), and the newly identified TACC3 sequences in Rattus norvegus, Gallus gallus, Silurana tropicalis, Danio rerio and T. rubripes, reported in this manuscript (Fig. 1).
T3205 2694-2697 DT denotes The
T3206 2706-2711 NN denotes TACC4
T3207 2698-2704 NN denotes rabbit
T3208 2705-2706 `` denotes "
T3209 2774-2779 VBN denotes found
T3210 2711-2712 '' denotes "
T3211 2713-2716 CC denotes and
T3212 2717-2720 DT denotes the
T3213 2728-2733 NN denotes TACC3
T3214 2721-2727 NN denotes rabbit
T3215 2734-2742 NN denotes sequence
T3216 2743-2747 WDT denotes that
T3217 2756-2764 VBN denotes isolated
T3218 2748-2750 PRP denotes we
T3219 2751-2755 VBP denotes have
T3220 2765-2768 VBP denotes are
T3221 2769-2773 RB denotes also
T3222 2780-2782 IN denotes on
T3223 2783-2786 DT denotes the
T3224 2792-2798 NN denotes branch
T3225 2787-2791 JJ denotes same
T3226 2799-2801 IN denotes of
T3227 2802-2805 DT denotes the
T3228 2824-2828 NN denotes tree
T3229 2806-2810 NN denotes TACC
T3230 2811-2823 JJ denotes phylogenetic
T3231 2829-2833 IN denotes with
T3232 2834-2837 DT denotes the
T3233 2850-2861 NNS denotes orthologues
T3234 2838-2843 JJ denotes other
T3235 2844-2849 NN denotes TACC3
T3236 2861-2863 , denotes ,
T3237 2863-2872 VBG denotes including
T3238 2873-2879 NN denotes maskin
T3239 2880-2881 -LRB- denotes (
T3240 2881-2888 NNP denotes Xenopus
T3241 2889-2895 NNP denotes laevis
T3242 2895-2896 -RRB- denotes )
T3243 2896-2898 , denotes ,
T3244 2898-2901 CC denotes and
T3245 2902-2905 DT denotes the
T3246 2929-2938 NNS denotes sequences
T3247 2906-2911 RB denotes newly
T3248 2912-2922 VBN denotes identified
T3249 2923-2928 NN denotes TACC3
T3250 2939-2941 IN denotes in
T3251 2942-2948 NNP denotes Rattus
T3252 2949-2957 NNP denotes norvegus
T3253 2957-2959 , denotes ,
T3254 2959-2965 NNP denotes Gallus
T3255 2966-2972 NN denotes gallus
T3256 2972-2974 , denotes ,
T3257 2974-2982 NNP denotes Silurana
T3258 2983-2993 NNP denotes tropicalis
T3259 2993-2995 , denotes ,
T3260 2995-3000 NNP denotes Danio
T3261 3001-3006 NNP denotes rerio
T3262 3007-3010 CC denotes and
T3263 3011-3013 NNP denotes T.
T3264 3014-3022 NNP denotes rubripes
T3265 3022-3024 , denotes ,
T3266 3024-3032 VBN denotes reported
T3267 3033-3035 IN denotes in
T3268 3036-3040 DT denotes this
T3269 3041-3051 NN denotes manuscript
T3270 3052-3053 -LRB- denotes (
T3271 3053-3057 NN denotes Fig.
T3272 3058-3059 CD denotes 1
T3273 3059-3060 -RRB- denotes )
T3274 3060-3061 . denotes .
T3275 3061-3170 sentence denotes Thus, it is not in a separate branch that may be expected if the sequence was a distinct TACC family member.
T3276 3062-3066 RB denotes Thus
T3277 3071-3073 VBZ denotes is
T3278 3066-3068 , denotes ,
T3279 3068-3070 PRP denotes it
T3280 3074-3077 RB denotes not
T3281 3078-3080 IN denotes in
T3282 3081-3082 DT denotes a
T3283 3092-3098 NN denotes branch
T3284 3083-3091 JJ denotes separate
T3285 3099-3103 WDT denotes that
T3286 3111-3119 VBN denotes expected
T3287 3104-3107 MD denotes may
T3288 3108-3110 VB denotes be
T3289 3120-3122 IN denotes if
T3290 3136-3139 VBD denotes was
T3291 3123-3126 DT denotes the
T3292 3127-3135 NN denotes sequence
T3293 3140-3141 DT denotes a
T3294 3163-3169 NN denotes member
T3295 3142-3150 JJ denotes distinct
T3296 3151-3155 NN denotes TACC
T3297 3156-3162 NN denotes family
T3298 3169-3170 . denotes .
R1587 T2678 T2677 prep of,Characterization
R1588 T2679 T2680 compound vertebrate,TACC3
R1589 T2680 T2681 compound TACC3,orthologues
R1590 T2681 T2678 pobj orthologues,of
R1591 T2683 T2684 prep Based,is
R1592 T2685 T2683 prep upon,Based
R1593 T2686 T2687 amod current,analysis
R1594 T2687 T2685 pobj analysis,upon
R1595 T2688 T2687 amod functional,analysis
R1596 T2689 T2684 punct ", ",is
R1597 T2690 T2691 det the,characterization
R1598 T2691 T2684 nsubj characterization,is
R1599 T2692 T2691 prep of,characterization
R1600 T2693 T2694 compound TACC3,orthologues
R1601 T2694 T2692 pobj orthologues,of
R1602 T2695 T2684 acomp likely,is
R1603 T2696 T2697 aux to,be
R1604 T2697 T2695 xcomp be,likely
R1605 T2698 T2697 acomp pivotal,be
R1606 T2699 T2698 prep to,pivotal
R1607 T2700 T2699 pcomp understanding,to
R1608 T2701 T2702 det the,sequence
R1609 T2702 T2700 dobj sequence,understanding
R1610 T2703 T2702 cc and,sequence
R1611 T2704 T2705 amod functional,evolution
R1612 T2705 T2702 conj evolution,sequence
R1613 T2706 T2702 prep of,sequence
R1614 T2707 T2708 det the,family
R1615 T2708 T2706 pobj family,of
R1616 T2709 T2708 compound TACC,family
R1617 T2710 T2708 compound gene,family
R1618 T2711 T2684 punct .,is
R1619 T2713 T2714 mark As,indicated
R1620 T2714 T2715 advcl indicated,duplicated
R1621 T2716 T2714 advmod below,indicated
R1622 T2717 T2715 punct ", ",duplicated
R1623 T2718 T2719 det the,region
R1624 T2719 T2715 nsubjpass region,duplicated
R1625 T2720 T2719 amod chromosomal,region
R1626 T2721 T2719 acl containing,region
R1627 T2722 T2723 det the,precursors
R1628 T2723 T2721 dobj precursors,containing
R1629 T2724 T2725 compound TACC,gene
R1630 T2725 T2723 compound gene,precursors
R1631 T2726 T2715 auxpass was,duplicated
R1632 T2727 T2715 advmod twice,duplicated
R1633 T2728 T2715 prep during,duplicated
R1634 T2729 T2730 compound vertebrate,evolution
R1635 T2730 T2728 pobj evolution,during
R1636 T2731 T2715 punct .,duplicated
R1637 T2733 T2734 mark Although,suggests
R1638 T2734 T2746 advcl suggests,excluded
R1639 T2735 T2736 det the,analysis
R1640 T2736 T2734 nsubj analysis,suggests
R1641 T2737 T2736 prep of,analysis
R1642 T2738 T2739 compound T.,rubripes
R1643 T2739 T2737 pobj rubripes,of
R1644 T2740 T2739 punct ", ",rubripes
R1645 T2741 T2739 conj rodents,rubripes
R1646 T2742 T2741 cc and,rodents
R1647 T2743 T2741 conj humans,rodents
R1648 T2744 T2745 advmod so,far
R1649 T2745 T2734 advmod far,suggests
R1650 T2747 T2748 mark that,included
R1651 T2748 T2734 ccomp included,suggests
R1652 T2749 T2750 det the,precursor
R1653 T2750 T2748 nsubjpass precursor,included
R1654 T2751 T2750 compound vertebrate,precursor
R1655 T2752 T2750 compound TACC3,precursor
R1656 T2753 T2748 auxpass was,included
R1657 T2754 T2748 neg not,included
R1658 T2755 T2748 prep in,included
R1659 T2756 T2757 det the,round
R1660 T2757 T2755 pobj round,in
R1661 T2758 T2757 amod second,round
R1662 T2759 T2757 prep of,round
R1663 T2760 T2761 amod genomic,duplication
R1664 T2761 T2759 pobj duplication,of
R1665 T2762 T2746 punct ", ",excluded
R1666 T2763 T2746 nsubjpass it,excluded
R1667 T2764 T2746 aux could,excluded
R1668 T2765 T2746 neg not,excluded
R1669 T2766 T2746 auxpass be,excluded
R1670 T2767 T2768 mark that,lost
R1671 T2768 T2746 ccomp lost,excluded
R1672 T2769 T2770 det a,gene
R1673 T2770 T2768 nsubjpass gene,lost
R1674 T2771 T2770 compound TACC4,gene
R1675 T2772 T2768 aux may,lost
R1676 T2773 T2768 aux have,lost
R1677 T2774 T2768 auxpass been,lost
R1678 T2775 T2768 prep during,lost
R1679 T2776 T2777 det the,evolution
R1680 T2777 T2775 pobj evolution,during
R1681 T2778 T2777 prep of,evolution
R1682 T2779 T2780 det these,lineages
R1683 T2780 T2778 pobj lineages,of
R1684 T2781 T2746 punct .,excluded
R1685 T2783 T2784 det The,cloning
R1686 T2784 T2785 nsubj cloning,added
R1687 T2786 T2784 prep of,cloning
R1688 T2787 T2788 det a,member
R1689 T2788 T2786 pobj member,of
R1690 T2789 T2788 amod new,member
R1691 T2790 T2788 prep of,member
R1692 T2791 T2792 det the,family
R1693 T2792 T2790 pobj family,of
R1694 T2793 T2792 compound TACC,family
R1695 T2794 T2784 prep in,cloning
R1696 T2795 T2796 compound Oryctolagus,cuniculus
R1697 T2796 T2794 pobj cuniculus,in
R1698 T2797 T2785 aux has,added
R1699 T2798 T2785 prep to,added
R1700 T2799 T2800 det this,controversy
R1701 T2800 T2798 pobj controversy,to
R1702 T2801 T2802 punct [,9
R1703 T2802 T2785 parataxis 9,added
R1704 T2803 T2802 punct ],9
R1705 T2804 T2785 punct .,added
R1706 T2806 T2807 advcl Designated,was
R1707 T2808 T2806 oprd TACC4,Designated
R1708 T2809 T2807 punct ", ",was
R1709 T2810 T2811 det the,cDNA
R1710 T2811 T2807 nsubj cDNA,was
R1711 T2812 T2813 nummod 1.5,kb
R1712 T2813 T2811 compound kb,cDNA
R1713 T2814 T2815 advmod highly,related
R1714 T2815 T2807 acomp related,was
R1715 T2816 T2815 punct ", ",related
R1716 T2817 T2815 cc but,related
R1717 T2818 T2815 conj proposed,related
R1718 T2819 T2820 aux to,be
R1719 T2820 T2818 xcomp be,proposed
R1720 T2821 T2820 acomp distinct,be
R1721 T2822 T2821 prep from,distinct
R1722 T2823 T2822 pobj TACC3,from
R1723 T2824 T2807 punct .,was
R1724 T2826 T2827 advmod However,suggested
R1725 T2828 T2827 punct ", ",suggested
R1726 T2829 T2830 compound Northern,blot
R1727 T2830 T2831 compound blot,data
R1728 T2831 T2827 nsubj data,suggested
R1729 T2832 T2833 mark that,produces
R1730 T2833 T2827 ccomp produces,suggested
R1731 T2834 T2835 det this,gene
R1732 T2835 T2833 nsubj gene,produces
R1733 T2836 T2837 det a,transcript
R1734 T2837 T2833 dobj transcript,produces
R1735 T2838 T2837 amod single,transcript
R1736 T2839 T2840 nummod 2.3,kb
R1737 T2840 T2837 compound kb,transcript
R1738 T2841 T2842 punct [,9
R1739 T2842 T2833 parataxis 9,produces
R1740 T2843 T2842 punct ],9
R1741 T2844 T2833 punct ", ",produces
R1742 T2845 T2833 advcl indicating,produces
R1743 T2846 T2847 mark that,was
R1744 T2847 T2845 ccomp was,indicating
R1745 T2848 T2849 det the,cDNA
R1746 T2849 T2847 nsubj cDNA,was
R1747 T2850 T2849 amod cloned,cDNA
R1748 T2851 T2847 acomp incomplete,was
R1749 T2852 T2827 punct .,suggested
R1750 T2854 T2855 det The,degree
R1751 T2855 T2856 nsubj degree,suggested
R1752 T2857 T2855 prep of,degree
R1753 T2858 T2857 pobj similarity,of
R1754 T2859 T2858 prep to,similarity
R1755 T2860 T2861 det the,sequence
R1756 T2861 T2859 pobj sequence,to
R1757 T2862 T2861 amod published,sequence
R1758 T2863 T2861 prep of,sequence
R1759 T2864 T2865 amod human,TACC3
R1760 T2865 T2863 pobj TACC3,of
R1761 T2866 T2864 cc and,human
R1762 T2867 T2864 conj mouse,human
R1763 T2868 T2856 prep to,suggested
R1764 T2869 T2868 pobj us,to
R1765 T2870 T2871 mark that,represents
R1766 T2871 T2856 ccomp represents,suggested
R1767 T2872 T2871 nsubj TACC4,represents
R1768 T2873 T2871 advmod actually,represents
R1769 T2874 T2875 det a,cDNA
R1770 T2875 T2871 dobj cDNA,represents
R1771 T2876 T2875 amod partial,cDNA
R1772 T2877 T2875 compound rabbit,cDNA
R1773 T2878 T2875 compound TACC3,cDNA
R1774 T2879 T2856 punct .,suggested
R1775 T2881 T2882 aux To,test
R1776 T2882 T2883 advcl test,set
R1777 T2884 T2885 det this,hypothesis
R1778 T2885 T2882 dobj hypothesis,test
R1779 T2886 T2883 punct ", ",set
R1780 T2887 T2883 nsubj we,set
R1781 T2888 T2883 prt out,set
R1782 T2889 T2890 aux to,clone
R1783 T2890 T2883 xcomp clone,set
R1784 T2891 T2892 det the,sequence
R1785 T2892 T2890 dobj sequence,clone
R1786 T2893 T2892 amod complete,sequence
R1787 T2894 T2892 compound rabbit,sequence
R1788 T2895 T2892 compound TACC3,sequence
R1789 T2896 T2890 punct ", ",clone
R1790 T2897 T2890 prep based,clone
R1791 T2898 T2897 prep upon,based
R1792 T2899 T2900 det the,features
R1793 T2900 T2898 pobj features,upon
R1794 T2901 T2900 amod known,features
R1795 T2902 T2900 prep of,features
R1796 T2903 T2904 amod human,TACC3
R1797 T2904 T2902 pobj TACC3,of
R1798 T2905 T2903 cc and,human
R1799 T2906 T2903 conj mouse,human
R1800 T2907 T2883 punct .,set
R1801 T2909 T2910 nsubj We,noted
R1802 T2911 T2910 aux have,noted
R1803 T2912 T2910 advmod previously,noted
R1804 T2913 T2914 mark that,are
R1805 T2914 T2910 ccomp are,noted
R1806 T2915 T2916 det the,regions
R1807 T2916 T2914 nsubj regions,are
R1808 T2917 T2918 npadvmod N,terminal
R1809 T2918 T2916 amod terminal,regions
R1810 T2919 T2918 punct -,terminal
R1811 T2920 T2918 cc and,terminal
R1812 T2921 T2922 npadvmod C,terminal
R1813 T2922 T2918 conj terminal,terminal
R1814 T2923 T2922 punct -,terminal
R1815 T2924 T2916 prep of,regions
R1816 T2925 T2926 det the,proteins
R1817 T2926 T2924 pobj proteins,of
R1818 T2927 T2926 amod human,proteins
R1819 T2928 T2927 cc and,human
R1820 T2929 T2927 conj mouse,human
R1821 T2930 T2926 compound TACC3,proteins
R1822 T2931 T2932 advmod highly,conserved
R1823 T2932 T2914 acomp conserved,are
R1824 T2933 T2934 punct (,2
R1825 T2934 T2910 parataxis 2,noted
R1826 T2935 T2934 punct [,2
R1827 T2936 T2934 punct ],2
R1828 T2937 T2934 punct ", ",2
R1829 T2938 T2934 advcl see,2
R1830 T2939 T2938 advmod below,see
R1831 T2940 T2934 punct ),2
R1832 T2941 T2910 punct .,noted
R1833 T2943 T2944 advmod Therefore,designed
R1834 T2945 T2944 punct ", ",designed
R1835 T2946 T2944 prep based,designed
R1836 T2947 T2946 prep upon,based
R1837 T2948 T2949 det the,identity
R1838 T2949 T2947 pobj identity,upon
R1839 T2950 T2949 compound sequence,identity
R1840 T2951 T2949 prep between,identity
R1841 T2952 T2953 det these,genes
R1842 T2953 T2951 pobj genes,between
R1843 T2954 T2944 punct ", ",designed
R1844 T2955 T2944 nsubj we,designed
R1845 T2956 T2957 det a,primer
R1846 T2957 T2944 dobj primer,designed
R1847 T2958 T2957 compound consensus,primer
R1848 T2959 T2957 compound oligonucleotide,primer
R1849 T2960 T2957 punct ", ",primer
R1850 T2961 T2957 appos T3con2,primer
R1851 T2962 T2957 punct ", ",primer
R1852 T2963 T2964 dep that,be
R1853 T2964 T2957 relcl be,primer
R1854 T2965 T2964 aux would,be
R1855 T2966 T2964 acomp suitable,be
R1856 T2967 T2966 prep for,suitable
R1857 T2968 T2969 det the,identification
R1858 T2969 T2967 pobj identification,for
R1859 T2970 T2969 prep of,identification
R1860 T2971 T2972 det the,region
R1861 T2972 T2970 pobj region,of
R1862 T2973 T2972 acl containing,region
R1863 T2974 T2975 det the,methionine
R1864 T2975 T2973 dobj methionine,containing
R1865 T2976 T2975 compound initiator,methionine
R1866 T2977 T2975 prep of,methionine
R1867 T2978 T2979 det the,cDNAs
R1868 T2979 T2977 pobj cDNAs,of
R1869 T2980 T2979 compound TACC3,cDNAs
R1870 T2981 T2979 prep from,cDNAs
R1871 T2982 T2981 pobj primates,from
R1872 T2983 T2982 cc and,primates
R1873 T2984 T2982 conj rodents,primates
R1874 T2985 T2944 punct .,designed
R1875 T2987 T2988 advcl Using,isolated
R1876 T2989 T2990 det this,primer
R1877 T2990 T2987 dobj primer,Using
R1878 T2991 T2987 punct ", ",Using
R1879 T2992 T2987 prep in,Using
R1880 T2993 T2992 pobj combination,in
R1881 T2994 T2993 prep with,combination
R1882 T2995 T2996 det the,primer
R1883 T2996 T2994 pobj primer,with
R1884 T2997 T2998 npadvmod TACC4,specific
R1885 T2998 T2996 amod specific,primer
R1886 T2999 T2998 punct -,specific
R1887 T3000 T2996 compound RACE,primer
R1888 T3001 T2996 punct (,primer
R1889 T3002 T2996 appos RACE2,primer
R1890 T3003 T2996 punct ),primer
R1891 T3004 T2996 punct ", ",primer
R1892 T3005 T3006 advmod initially,used
R1893 T3006 T2996 acl used,primer
R1894 T3007 T3006 agent by,used
R1895 T3008 T3007 pobj Steadman,by
R1896 T3009 T3010 advmod et,al
R1897 T3010 T3008 advmod al,Steadman
R1898 T3011 T3012 punct [,9
R1899 T3012 T3006 parataxis 9,used
R1900 T3013 T3012 punct ],9
R1901 T3014 T2988 punct ", ",isolated
R1902 T3015 T2988 nsubj we,isolated
R1903 T3016 T3017 det a,product
R1904 T3017 T2988 dobj product,isolated
R1905 T3018 T3019 nummod 1.5,kb
R1906 T3019 T3020 compound kb,PCR
R1907 T3020 T3017 compound PCR,product
R1908 T3021 T2988 prep from,isolated
R1909 T3022 T3023 compound rabbit,cDNA
R1910 T3023 T3021 pobj cDNA,from
R1911 T3024 T3023 compound brain,cDNA
R1912 T3025 T2988 prep by,isolated
R1913 T3026 T3027 compound rt,PCR
R1914 T3027 T3025 pobj PCR,by
R1915 T3028 T3027 punct -,PCR
R1916 T3029 T2988 punct .,isolated
R1917 T3031 T3032 prep In,generated
R1918 T3033 T3031 pobj combination,In
R1919 T3034 T3033 prep with,combination
R1920 T3035 T3036 nummod 3,RACE
R1921 T3036 T3034 pobj RACE,with
R1922 T3037 T3035 punct ',3
R1923 T3038 T3032 punct ", ",generated
R1924 T3039 T3032 nsubj this,generated
R1925 T3040 T3041 det a,cDNA
R1926 T3041 T3032 dobj cDNA,generated
R1927 T3042 T3041 compound consensus,cDNA
R1928 T3043 T3041 prep of,cDNA
R1929 T3044 T3045 nummod 2283,bp
R1930 T3045 T3043 pobj bp,of
R1931 T3046 T3047 dep which,corresponds
R1932 T3047 T3041 relcl corresponds,cDNA
R1933 T3048 T3047 prep to,corresponds
R1934 T3049 T3050 det the,size
R1935 T3050 T3048 pobj size,to
R1936 T3051 T3050 compound transcript,size
R1937 T3052 T3050 prep of,size
R1938 T3053 T3054 nummod 2.3,kb
R1939 T3054 T3052 pobj kb,of
R1940 T3055 T3050 acl detected,size
R1941 T3056 T3055 prep by,detected
R1942 T3057 T3058 det the,sequence
R1943 T3058 T3056 pobj sequence,by
R1944 T3059 T3058 punct """",sequence
R1945 T3060 T3058 nmod TACC4,sequence
R1946 T3061 T3058 punct """",sequence
R1947 T3062 T3058 acl reported,sequence
R1948 T3063 T3062 prep in,reported
R1949 T3064 T3063 pobj Figure,in
R1950 T3065 T3064 nummod 4,Figure
R1951 T3066 T3064 prep of,Figure
R1952 T3067 T3066 pobj Steadman,of
R1953 T3068 T3069 advmod et,al
R1954 T3069 T3067 advmod al,Steadman
R1955 T3070 T3071 punct [,9
R1956 T3071 T3062 parataxis 9,reported
R1957 T3072 T3071 punct ],9
R1958 T3073 T3032 punct .,generated
R1959 T3075 T3076 advmod Thus,corresponds
R1960 T3077 T3076 punct ", ",corresponds
R1961 T3078 T3079 mark while,remains
R1962 T3079 T3076 advcl remains,corresponds
R1963 T3080 T3079 nsubj it,remains
R1964 T3081 T3079 oprd possible,remains
R1965 T3082 T3083 mark that,is
R1966 T3083 T3079 ccomp is,remains
R1967 T3084 T3085 det the,sequence
R1968 T3085 T3083 nsubj sequence,is
R1969 T3086 T3085 punct """",sequence
R1970 T3087 T3085 nmod TACC4,sequence
R1971 T3088 T3085 punct """",sequence
R1972 T3089 T3090 det an,product
R1973 T3090 T3083 attr product,is
R1974 T3091 T3090 amod alternative,product
R1975 T3092 T3090 compound splice,product
R1976 T3093 T3083 punct ", ",is
R1977 T3094 T3083 cc or,is
R1978 T3095 T3083 conj is,is
R1979 T3096 T3097 det the,product
R1980 T3097 T3095 attr product,is
R1981 T3098 T3097 prep of,product
R1982 T3099 T3098 pobj reduplication,of
R1983 T3100 T3099 prep of,reduplication
R1984 T3101 T3102 det the,gene
R1985 T3102 T3100 pobj gene,of
R1986 T3103 T3102 compound TACC3,gene
R1987 T3104 T3105 punct (,events
R1988 T3105 T3095 parataxis events,is
R1989 T3106 T3107 dep that,be
R1990 T3107 T3105 relcl be,events
R1991 T3108 T3107 aux would,be
R1992 T3109 T3107 acomp specific,be
R1993 T3110 T3109 prep to,specific
R1994 T3111 T3112 det the,rabbit
R1995 T3112 T3110 pobj rabbit,to
R1996 T3113 T3105 punct ),events
R1997 T3114 T3076 punct ", ",corresponds
R1998 T3115 T3116 det the,transcript
R1999 T3116 T3076 nsubj transcript,corresponds
R2000 T3117 T3116 amod only,transcript
R2001 T3118 T3116 acl detected,transcript
R2002 T3119 T3118 prep in,detected
R2003 T3120 T3121 compound rabbit,RNA
R2004 T3121 T3119 pobj RNA,in
R2005 T3122 T3076 prep to,corresponds
R2006 T3123 T3124 det the,size
R2007 T3124 T3122 pobj size,to
R2008 T3125 T3124 amod predicted,size
R2009 T3126 T3124 compound transcript,size
R2010 T3127 T3124 prep of,size
R2011 T3128 T3129 det the,sequence
R2012 T3129 T3127 pobj sequence,of
R2013 T3130 T3129 compound TACC3,sequence
R2014 T3131 T3132 dep that,identified
R2015 T3132 T3124 relcl identified,size
R2016 T3133 T3132 nsubj we,identified
R2017 T3134 T3132 aux have,identified
R2018 T3135 T3132 advmod here,identified
R2019 T3136 T3076 punct .,corresponds
R2020 T3138 T3139 advmod Furthermore,found
R2021 T3140 T3139 punct ", ",found
R2022 T3141 T3142 det the,string
R2023 T3142 T3139 nsubjpass string,found
R2024 T3143 T3142 prep of,string
R2025 T3144 T3143 pobj nucleotides,of
R2026 T3145 T3144 acl found,nucleotides
R2027 T3146 T3145 prep at,found
R2028 T3147 T3148 det the,end
R2029 T3148 T3146 pobj end,at
R2030 T3149 T3148 nummod 5,end
R2031 T3150 T3149 punct ',5
R2032 T3151 T3148 prep of,end
R2033 T3152 T3153 det the,sequence
R2034 T3153 T3151 pobj sequence,of
R2035 T3154 T3153 punct """",sequence
R2036 T3155 T3153 nmod TACC4,sequence
R2037 T3156 T3153 punct """",sequence
R2038 T3157 T3139 auxpass is,found
R2039 T3158 T3139 advmod also,found
R2040 T3159 T3139 prep at,found
R2041 T3160 T3161 det the,ends
R2042 T3161 T3159 pobj ends,at
R2043 T3162 T3161 nummod 5,ends
R2044 T3163 T3162 punct ',5
R2045 T3164 T3161 prep of,ends
R2046 T3165 T3166 det a,number
R2047 T3166 T3164 pobj number,of
R2048 T3167 T3166 prep of,number
R2049 T3168 T3169 compound cDNA,sequences
R2050 T3169 T3167 pobj sequences,of
R2051 T3170 T3169 punct (,sequences
R2052 T3171 T3172 advmod e.g.,NM_023500
R2053 T3172 T3169 appos NM_023500,sequences
R2054 T3173 T3172 nmod U82468,NM_023500
R2055 T3174 T3172 punct ", ",NM_023500
R2056 T3175 T3169 punct ),sequences
R2057 T3176 T3169 punct ", ",sequences
R2058 T3177 T3178 dep that,isolated
R2059 T3178 T3169 relcl isolated,sequences
R2060 T3179 T3178 auxpass were,isolated
R2061 T3180 T3178 agent by,isolated
R2062 T3181 T3182 nummod 5,RACE
R2063 T3182 T3180 pobj RACE,by
R2064 T3183 T3181 punct ',5
R2065 T3184 T3139 punct ", ",found
R2066 T3185 T3139 advcl suggesting,found
R2067 T3186 T3187 mark that,correspond
R2068 T3187 T3185 ccomp correspond,suggesting
R2069 T3188 T3187 nsubj they,correspond
R2070 T3189 T3187 aux may,correspond
R2071 T3190 T3187 prep to,correspond
R2072 T3191 T3192 det an,artefact
R2073 T3192 T3190 pobj artefact,to
R2074 T3193 T3192 prep of,artefact
R2075 T3194 T3195 det the,methodology
R2076 T3195 T3193 pobj methodology,of
R2077 T3196 T3195 nummod 5,methodology
R2078 T3197 T3196 punct ',5
R2079 T3198 T3195 compound RACE,methodology
R2080 T3199 T3195 acl used,methodology
R2081 T3200 T3199 prep in,used
R2082 T3201 T3202 poss their,construction
R2083 T3202 T3200 pobj construction,in
R2084 T3203 T3139 punct .,found
R2085 T3205 T3206 det The,TACC4
R2086 T3206 T3209 nsubjpass TACC4,found
R2087 T3207 T3206 nmod rabbit,TACC4
R2088 T3208 T3206 punct """",TACC4
R2089 T3210 T3206 punct """",TACC4
R2090 T3211 T3206 cc and,TACC4
R2091 T3212 T3213 det the,TACC3
R2092 T3213 T3215 compound TACC3,sequence
R2093 T3214 T3213 compound rabbit,TACC3
R2094 T3215 T3206 conj sequence,TACC4
R2095 T3216 T3217 dep that,isolated
R2096 T3217 T3206 relcl isolated,TACC4
R2097 T3218 T3217 nsubj we,isolated
R2098 T3219 T3217 aux have,isolated
R2099 T3220 T3209 auxpass are,found
R2100 T3221 T3209 advmod also,found
R2101 T3222 T3209 prep on,found
R2102 T3223 T3224 det the,branch
R2103 T3224 T3222 pobj branch,on
R2104 T3225 T3224 amod same,branch
R2105 T3226 T3224 prep of,branch
R2106 T3227 T3228 det the,tree
R2107 T3228 T3226 pobj tree,of
R2108 T3229 T3228 nmod TACC,tree
R2109 T3230 T3228 amod phylogenetic,tree
R2110 T3231 T3209 prep with,found
R2111 T3232 T3233 det the,orthologues
R2112 T3233 T3231 pobj orthologues,with
R2113 T3234 T3233 amod other,orthologues
R2114 T3235 T3233 compound TACC3,orthologues
R2115 T3236 T3233 punct ", ",orthologues
R2116 T3237 T3233 prep including,orthologues
R2117 T3238 T3237 pobj maskin,including
R2118 T3239 T3238 punct (,maskin
R2119 T3240 T3241 compound Xenopus,laevis
R2120 T3241 T3238 appos laevis,maskin
R2121 T3242 T3238 punct ),maskin
R2122 T3243 T3238 punct ", ",maskin
R2123 T3244 T3238 cc and,maskin
R2124 T3245 T3246 det the,sequences
R2125 T3246 T3238 conj sequences,maskin
R2126 T3247 T3248 advmod newly,identified
R2127 T3248 T3246 amod identified,sequences
R2128 T3249 T3246 compound TACC3,sequences
R2129 T3250 T3246 prep in,sequences
R2130 T3251 T3252 compound Rattus,norvegus
R2131 T3252 T3250 pobj norvegus,in
R2132 T3253 T3252 punct ", ",norvegus
R2133 T3254 T3255 compound Gallus,gallus
R2134 T3255 T3252 conj gallus,norvegus
R2135 T3256 T3255 punct ", ",gallus
R2136 T3257 T3258 compound Silurana,tropicalis
R2137 T3258 T3255 conj tropicalis,gallus
R2138 T3259 T3258 punct ", ",tropicalis
R2139 T3260 T3261 compound Danio,rerio
R2140 T3261 T3258 conj rerio,tropicalis
R2141 T3262 T3261 cc and,rerio
R2142 T3263 T3264 compound T.,rubripes
R2143 T3264 T3261 conj rubripes,rerio
R2144 T3265 T3246 punct ", ",sequences
R2145 T3266 T3246 acl reported,sequences
R2146 T3267 T3266 prep in,reported
R2147 T3268 T3269 det this,manuscript
R2148 T3269 T3267 pobj manuscript,in
R2149 T3270 T3271 punct (,Fig.
R2150 T3271 T3209 parataxis Fig.,found
R2151 T3272 T3271 nummod 1,Fig.
R2152 T3273 T3271 punct ),Fig.
R2153 T3274 T3209 punct .,found
R2154 T3276 T3277 advmod Thus,is
R2155 T3278 T3277 punct ", ",is
R2156 T3279 T3277 nsubj it,is
R2157 T3280 T3277 neg not,is
R2158 T3281 T3277 prep in,is
R2159 T3282 T3283 det a,branch
R2160 T3283 T3281 pobj branch,in
R2161 T3284 T3283 amod separate,branch
R2162 T3285 T3286 dep that,expected
R2163 T3286 T3283 relcl expected,branch
R2164 T3287 T3286 aux may,expected
R2165 T3288 T3286 auxpass be,expected
R2166 T3289 T3290 mark if,was
R2167 T3290 T3277 advcl was,is
R2168 T3291 T3292 det the,sequence
R2169 T3292 T3290 nsubj sequence,was
R2170 T3293 T3294 det a,member
R2171 T3294 T3290 attr member,was
R2172 T3295 T3294 amod distinct,member
R2173 T3296 T3294 compound TACC,member
R2174 T3297 T3294 compound family,member
R2175 T3298 T3277 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2571 20-30 NCBITaxon:7742 denotes vertebrate
T2572 31-36 PR_EXT:000016008 denotes TACC3
T2573 37-48 SO_EXT:0000855 denotes orthologues
T2574 113-118 PR_EXT:000016008 denotes TACC3
T2575 119-130 SO_EXT:0000855 denotes orthologues
T2576 176-184 SO_EXT:biological_sequence denotes sequence
T2577 222-226 SO_EXT:0000704 denotes gene
T2578 259-277 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal region
T2579 298-302 SO_EXT:0000704 denotes gene
T2580 318-328 SO_EXT:sequence_duplication_process denotes duplicated
T2581 342-352 NCBITaxon:7742 denotes vertebrate
T2582 389-400 NCBITaxon:31033 denotes T. rubripes
T2583 402-409 NCBITaxon:9989 denotes rodents
T2584 414-420 NCBITaxon:9606 denotes humans
T2585 446-456 NCBITaxon:7742 denotes vertebrate
T2586 457-462 PR_EXT:000016008 denotes TACC3
T2587 513-520 SO_EXT:0001026 denotes genomic
T2588 521-532 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T2589 572-576 SO_EXT:0000704 denotes gene
T2590 640-647 SO_EXT:sequence_cloning_process denotes cloning
T2591 686-707 NCBITaxon:9986 denotes Oryctolagus cuniculus
T2592 770-771 CHEBI_SO_EXT:base denotes b
T2593 772-776 SO_EXT:cDNA denotes cDNA
T2594 830-835 PR_EXT:000016008 denotes TACC3
T2595 885-889 SO_EXT:0000704 denotes gene
T2596 913-914 CHEBI_SO_EXT:base denotes b
T2597 915-925 SO_EXT:0000673 denotes transcript
T2598 951-957 SO_EXT:sequence_cloning_process denotes cloned
T2599 958-962 SO_EXT:cDNA denotes cDNA
T2600 1021-1029 SO_EXT:biological_sequence denotes sequence
T2601 1033-1038 NCBITaxon:9606 denotes human
T2602 1043-1048 NCBITaxon:10088 denotes mouse
T2603 1049-1054 PR_EXT:000016008 denotes TACC3
T2604 1112-1118 NCBITaxon:9986 denotes rabbit
T2605 1119-1124 PR_EXT:000016008 denotes TACC3
T2606 1125-1129 SO_EXT:cDNA denotes cDNA
T2607 1170-1175 SO_EXT:sequence_cloning_process denotes clone
T2608 1189-1195 NCBITaxon:9986 denotes rabbit
T2609 1196-1201 PR_EXT:000016008 denotes TACC3
T2610 1202-1210 SO_EXT:biological_sequence denotes sequence
T2611 1245-1250 NCBITaxon:9606 denotes human
T2612 1255-1260 NCBITaxon:10088 denotes mouse
T2613 1261-1266 PR_EXT:000016008 denotes TACC3
T2614 1302-1312 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminal
T2615 1317-1327 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T2616 1343-1348 NCBITaxon:9606 denotes human
T2617 1353-1358 NCBITaxon:10088 denotes mouse
T2618 1359-1364 PR_EXT:000016008 denotes TACC3
T2619 1365-1373 CHEBI_PR_EXT:protein denotes proteins
T2620 1385-1394 SO_EXT:biological_conservation_process_or_quality denotes conserved
T2621 1439-1447 SO_EXT:biological_sequence denotes sequence
T2622 1471-1476 SO_EXT:0000704 denotes genes
T2623 1492-1501 SO:0000993 denotes consensus
T2624 1502-1517 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T2625 1518-1524 SO_EXT:0000112 denotes primer
T2626 1619-1629 CHEBI_SO_EXT:methionine denotes methionine
T2627 1637-1642 PR_EXT:000016008 denotes TACC3
T2628 1643-1648 SO_EXT:cDNA denotes cDNAs
T2629 1654-1662 NCBITaxon:9443 denotes primates
T2630 1667-1674 NCBITaxon:9989 denotes rodents
T2631 1687-1693 SO_EXT:0000112 denotes primer
T2632 1739-1745 SO_EXT:0000112 denotes primer
T2633 1812-1813 CHEBI_SO_EXT:base denotes b
T2634 1814-1825 SO_EXT:0000006 denotes PCR product
T2635 1831-1837 NCBITaxon:9986 denotes rabbit
T2636 1838-1843 UBERON:0000955 denotes brain
T2637 1844-1848 SO_EXT:cDNA denotes cDNA
T2638 1852-1854 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes rt
T2639 1905-1914 SO:0000993 denotes consensus
T2640 1915-1919 SO_EXT:cDNA denotes cDNA
T2641 1928-1930 SO_EXT:0000028 denotes bp
T2642 1956-1966 SO_EXT:0000673 denotes transcript
T2643 1980-1981 CHEBI_SO_EXT:base denotes b
T2644 2006-2014 SO_EXT:biological_sequence denotes sequence
T2645 2108-2116 SO_EXT:biological_sequence denotes sequence
T2646 2123-2141 GO:0000380 denotes alternative splice
T2647 2123-2149 SO_EXT:alternative_splice_variant denotes alternative splice product
T2648 2174-2185 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T2649 2193-2198 PR_EXT:000016008 denotes TACC3
T2650 2199-2203 SO_EXT:0000704 denotes gene
T2651 2242-2248 NCBITaxon:9986 denotes rabbit
T2652 2260-2270 SO_EXT:0000673 denotes transcript
T2653 2283-2289 NCBITaxon:9986 denotes rabbit
T2654 2290-2293 CHEBI_SO_EXT:RNA denotes RNA
T2655 2313-2333 SO_EXT:0002138 denotes predicted transcript
T2656 2346-2351 PR_EXT:000016008 denotes TACC3
T2657 2352-2360 SO_EXT:biological_sequence denotes sequence
T2658 2418-2429 CHEBI_SO_EXT:nucleotide denotes nucleotides
T2659 2465-2473 SO_EXT:biological_sequence denotes sequence
T2660 2518-2522 SO_EXT:cDNA denotes cDNA
T2661 2523-2532 SO_EXT:biological_sequence denotes sequences
T2662 2698-2704 NCBITaxon:9986 denotes rabbit
T2663 2721-2727 NCBITaxon:9986 denotes rabbit
T2664 2728-2733 PR_EXT:000016008 denotes TACC3
T2665 2734-2742 SO_EXT:biological_sequence denotes sequence
T2666 2844-2849 PR_EXT:000016008 denotes TACC3
T2667 2850-2861 SO_EXT:0000855 denotes orthologues
T2668 2881-2895 NCBITaxon:8355 denotes Xenopus laevis
T2669 2923-2928 PR_EXT:000016008 denotes TACC3
T2670 2929-2938 SO_EXT:biological_sequence denotes sequences
T2671 2942-2957 NCBITaxon:10116 denotes Rattus norvegus
T2672 2959-2972 NCBITaxon:9031 denotes Gallus gallus
T2673 2974-2993 NCBITaxon:8364 denotes Silurana tropicalis
T2674 2995-3006 NCBITaxon:7955 denotes Danio rerio
T2675 3011-3022 NCBITaxon:31033 denotes T. rubripes
T2676 3127-3135 SO_EXT:biological_sequence denotes sequence

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2546 1831-1837 NCBITaxon:9986 denotes rabbit
T2505 20-30 NCBITaxon:7742 denotes vertebrate
T2506 31-36 PR:000016008 denotes TACC3
T2507 37-48 SO:0000855 denotes orthologues
T2508 113-118 PR:000016008 denotes TACC3
T2509 119-130 SO:0000855 denotes orthologues
T2510 222-226 SO:0000704 denotes gene
T2511 298-302 SO:0000704 denotes gene
T2512 342-352 NCBITaxon:7742 denotes vertebrate
T2513 389-400 NCBITaxon:31033 denotes T. rubripes
T2514 402-409 NCBITaxon:9989 denotes rodents
T2515 414-420 NCBITaxon:9606 denotes humans
T2516 446-456 NCBITaxon:7742 denotes vertebrate
T2517 457-462 PR:000016008 denotes TACC3
T2518 513-520 SO:0001026 denotes genomic
T2519 572-576 SO:0000704 denotes gene
T2520 686-707 NCBITaxon:9986 denotes Oryctolagus cuniculus
T2521 830-835 PR:000016008 denotes TACC3
T2522 885-889 SO:0000704 denotes gene
T2523 915-925 SO:0000673 denotes transcript
T2524 1033-1038 NCBITaxon:9606 denotes human
T2525 1043-1048 NCBITaxon:10088 denotes mouse
T2526 1049-1054 PR:000016008 denotes TACC3
T2527 1112-1118 NCBITaxon:9986 denotes rabbit
T2528 1119-1124 PR:000016008 denotes TACC3
T2529 1189-1195 NCBITaxon:9986 denotes rabbit
T2530 1196-1201 PR:000016008 denotes TACC3
T2531 1245-1250 NCBITaxon:9606 denotes human
T2532 1255-1260 NCBITaxon:10088 denotes mouse
T2533 1261-1266 PR:000016008 denotes TACC3
T2534 1343-1348 NCBITaxon:9606 denotes human
T2535 1353-1358 NCBITaxon:10088 denotes mouse
T2536 1359-1364 PR:000016008 denotes TACC3
T2537 1471-1476 SO:0000704 denotes genes
T2538 1492-1501 SO:0000993 denotes consensus
T2539 1518-1524 SO:0000112 denotes primer
T2540 1637-1642 PR:000016008 denotes TACC3
T2541 1654-1662 NCBITaxon:9443 denotes primates
T2542 1667-1674 NCBITaxon:9989 denotes rodents
T2543 1687-1693 SO:0000112 denotes primer
T2544 1739-1745 SO:0000112 denotes primer
T2545 1814-1825 SO:0000006 denotes PCR product
T2547 1838-1843 UBERON:0000955 denotes brain
T2548 1905-1914 SO:0000993 denotes consensus
T2549 1928-1930 SO:0000028 denotes bp
T2550 1956-1966 SO:0000673 denotes transcript
T2551 2123-2141 GO:0000380 denotes alternative splice
T2552 2193-2198 PR:000016008 denotes TACC3
T2553 2199-2203 SO:0000704 denotes gene
T2554 2242-2248 NCBITaxon:9986 denotes rabbit
T2555 2260-2270 SO:0000673 denotes transcript
T2556 2283-2289 NCBITaxon:9986 denotes rabbit
T2557 2313-2333 SO:0002138 denotes predicted transcript
T2558 2346-2351 PR:000016008 denotes TACC3
T2559 2698-2704 NCBITaxon:9986 denotes rabbit
T2560 2721-2727 NCBITaxon:9986 denotes rabbit
T2561 2728-2733 PR:000016008 denotes TACC3
T2562 2844-2849 PR:000016008 denotes TACC3
T2563 2850-2861 SO:0000855 denotes orthologues
T2564 2881-2895 NCBITaxon:8355 denotes Xenopus laevis
T2565 2923-2928 PR:000016008 denotes TACC3
T2566 2942-2957 NCBITaxon:10116 denotes Rattus norvegus
T2567 2959-2972 NCBITaxon:9031 denotes Gallus gallus
T2568 2974-2993 NCBITaxon:8364 denotes Silurana tropicalis
T2569 2995-3006 NCBITaxon:7955 denotes Danio rerio
T2570 3011-3022 NCBITaxon:31033 denotes T. rubripes

2_test

Id Subject Object Predicate Lexical cue
15207008-12015314-9665994 739-740 12015314 denotes 9
15207008-12015314-9665995 927-928 12015314 denotes 9
15207008-10366448-9665996 1397-1398 10366448 denotes 2
15207008-12015314-9665997 1789-1790 12015314 denotes 9
15207008-12015314-9665998 2055-2056 12015314 denotes 9