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PMC:441373 / 7285-7724 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1938 0-439 sentence denotes Thus, if the TACC genes were duplicated at both events, we would expect to identify four TACC genes in the most "primitive" compact vertebrate genome sequenced to date, the pufferfish Takifugu rubripes, with three genes corresponding to the human TACC1-3, and, in keeping with the proposed model for genomic duplication of the chromosomal loci for the TACC genes (discussed below), a possible fourth gene deriving from the TACC3 ancestor.
T1939 1-5 RB denotes Thus
T1940 66-72 VB denotes expect
T1941 5-7 , denotes ,
T1942 7-9 IN denotes if
T1943 30-40 VBN denotes duplicated
T1944 10-13 DT denotes the
T1945 19-24 NNS denotes genes
T1946 14-18 NN denotes TACC
T1947 25-29 VBD denotes were
T1948 41-43 IN denotes at
T1949 44-48 DT denotes both
T1950 49-55 NNS denotes events
T1951 55-57 , denotes ,
T1952 57-59 PRP denotes we
T1953 60-65 MD denotes would
T1954 73-75 TO denotes to
T1955 76-84 VB denotes identify
T1956 85-89 CD denotes four
T1957 95-100 NNS denotes genes
T1958 90-94 NN denotes TACC
T1959 101-103 IN denotes in
T1960 104-107 DT denotes the
T1961 144-150 NN denotes genome
T1962 108-112 JJS denotes most
T1963 114-123 JJ denotes primitive
T1964 113-114 `` denotes "
T1965 123-124 '' denotes "
T1966 125-132 JJ denotes compact
T1967 133-143 NN denotes vertebrate
T1968 151-160 VBN denotes sequenced
T1969 161-163 IN denotes to
T1970 164-168 NN denotes date
T1971 168-170 , denotes ,
T1972 170-173 DT denotes the
T1973 174-184 NN denotes pufferfish
T1974 185-193 NNP denotes Takifugu
T1975 194-202 NNP denotes rubripes
T1976 202-204 , denotes ,
T1977 204-208 IN denotes with
T1978 209-214 CD denotes three
T1979 215-220 NNS denotes genes
T1980 221-234 VBG denotes corresponding
T1981 235-237 IN denotes to
T1982 238-241 DT denotes the
T1983 248-253 NN denotes TACC1
T1984 242-247 JJ denotes human
T1985 253-254 HYPH denotes -
T1986 254-255 CD denotes 3
T1987 255-257 , denotes ,
T1988 257-260 CC denotes and
T1989 260-262 , denotes ,
T1990 262-264 IN denotes in
T1991 401-405 NN denotes gene
T1992 265-272 VBG denotes keeping
T1993 273-277 IN denotes with
T1994 278-281 DT denotes the
T1995 291-296 NN denotes model
T1996 282-290 VBN denotes proposed
T1997 297-300 IN denotes for
T1998 301-308 JJ denotes genomic
T1999 309-320 NN denotes duplication
T2000 321-323 IN denotes of
T2001 324-327 DT denotes the
T2002 340-344 NNS denotes loci
T2003 328-339 JJ denotes chromosomal
T2004 345-348 IN denotes for
T2005 349-352 DT denotes the
T2006 358-363 NNS denotes genes
T2007 353-357 NN denotes TACC
T2008 364-365 -LRB- denotes (
T2009 365-374 VBN denotes discussed
T2010 375-380 RB denotes below
T2011 380-381 -RRB- denotes )
T2012 381-383 , denotes ,
T2013 383-384 DT denotes a
T2014 385-393 JJ denotes possible
T2015 394-400 JJ denotes fourth
T2016 406-414 VBG denotes deriving
T2017 415-419 IN denotes from
T2018 420-423 DT denotes the
T2019 430-438 NN denotes ancestor
T2020 424-429 NN denotes TACC3
T2021 438-439 . denotes .
R1114 T1939 T1940 advmod Thus,expect
R1115 T1941 T1940 punct ", ",expect
R1116 T1942 T1943 mark if,duplicated
R1117 T1943 T1940 advcl duplicated,expect
R1118 T1944 T1945 det the,genes
R1119 T1945 T1943 nsubjpass genes,duplicated
R1120 T1946 T1945 compound TACC,genes
R1121 T1947 T1943 auxpass were,duplicated
R1122 T1948 T1943 prep at,duplicated
R1123 T1949 T1950 det both,events
R1124 T1950 T1948 pobj events,at
R1125 T1951 T1940 punct ", ",expect
R1126 T1952 T1940 nsubj we,expect
R1127 T1953 T1940 aux would,expect
R1128 T1954 T1955 aux to,identify
R1129 T1955 T1940 xcomp identify,expect
R1130 T1956 T1957 nummod four,genes
R1131 T1957 T1955 dobj genes,identify
R1132 T1958 T1957 compound TACC,genes
R1133 T1959 T1955 prep in,identify
R1134 T1960 T1961 det the,genome
R1135 T1961 T1959 pobj genome,in
R1136 T1962 T1963 amod most,primitive
R1137 T1963 T1961 amod primitive,genome
R1138 T1964 T1963 punct """",primitive
R1139 T1965 T1963 punct """",primitive
R1140 T1966 T1961 amod compact,genome
R1141 T1967 T1961 compound vertebrate,genome
R1142 T1968 T1961 acl sequenced,genome
R1143 T1969 T1961 prep to,genome
R1144 T1970 T1969 pobj date,to
R1145 T1971 T1961 punct ", ",genome
R1146 T1972 T1973 det the,pufferfish
R1147 T1973 T1961 appos pufferfish,genome
R1148 T1974 T1975 compound Takifugu,rubripes
R1149 T1975 T1973 appos rubripes,pufferfish
R1150 T1976 T1973 punct ", ",pufferfish
R1151 T1977 T1973 prep with,pufferfish
R1152 T1978 T1979 nummod three,genes
R1153 T1979 T1977 pobj genes,with
R1154 T1980 T1979 acl corresponding,genes
R1155 T1981 T1980 prep to,corresponding
R1156 T1982 T1983 det the,TACC1
R1157 T1983 T1981 pobj TACC1,to
R1158 T1984 T1983 amod human,TACC1
R1159 T1985 T1983 punct -,TACC1
R1160 T1986 T1983 nummod 3,TACC1
R1161 T1987 T1979 punct ", ",genes
R1162 T1988 T1979 cc and,genes
R1163 T1989 T1979 punct ", ",genes
R1164 T1990 T1991 prep in,gene
R1165 T1991 T1979 conj gene,genes
R1166 T1992 T1990 pobj keeping,in
R1167 T1993 T1992 prep with,keeping
R1168 T1994 T1995 det the,model
R1169 T1995 T1993 pobj model,with
R1170 T1996 T1995 amod proposed,model
R1171 T1997 T1995 prep for,model
R1172 T1998 T1999 amod genomic,duplication
R1173 T1999 T1997 pobj duplication,for
R1174 T2000 T1999 prep of,duplication
R1175 T2001 T2002 det the,loci
R1176 T2002 T2000 pobj loci,of
R1177 T2003 T2002 amod chromosomal,loci
R1178 T2004 T1995 prep for,model
R1179 T2005 T2006 det the,genes
R1180 T2006 T2004 pobj genes,for
R1181 T2007 T2006 compound TACC,genes
R1182 T2008 T2009 punct (,discussed
R1183 T2009 T1995 parataxis discussed,model
R1184 T2010 T2009 advmod below,discussed
R1185 T2011 T2009 punct ),discussed
R1186 T2012 T1991 punct ", ",gene
R1187 T2013 T1991 det a,gene
R1188 T2014 T1991 amod possible,gene
R1189 T2015 T1991 amod fourth,gene
R1190 T2016 T1991 acl deriving,gene
R1191 T2017 T2016 prep from,deriving
R1192 T2018 T2019 det the,ancestor
R1193 T2019 T2017 pobj ancestor,from
R1194 T2020 T2019 compound TACC3,ancestor
R1195 T2021 T1940 punct .,expect

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1493 19-24 SO_EXT:0000704 denotes genes
T1494 30-40 SO_EXT:sequence_duplication_process denotes duplicated
T1495 95-100 SO_EXT:0000704 denotes genes
T1496 133-143 NCBITaxon:7742 denotes vertebrate
T1497 144-150 SO_EXT:0001026 denotes genome
T1498 174-184 NCBITaxon:31031 denotes pufferfish
T1499 185-202 NCBITaxon:31033 denotes Takifugu rubripes
T1500 215-220 SO_EXT:0000704 denotes genes
T1501 242-247 NCBITaxon:9606 denotes human
T1502 248-253 PR_EXT:000016006 denotes TACC1
T1503 301-308 SO_EXT:0001026 denotes genomic
T1504 309-320 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T1505 328-344 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal loci
T1506 358-363 SO_EXT:0000704 denotes genes
T1507 401-405 SO_EXT:0000704 denotes gene
T1508 424-429 PR_EXT:000016008 denotes TACC3

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1361 19-24 SO:0000704 denotes genes
T1362 95-100 SO:0000704 denotes genes
T1363 133-143 NCBITaxon:7742 denotes vertebrate
T1364 144-150 SO:0001026 denotes genome
T1365 174-184 NCBITaxon:31031 denotes pufferfish
T1366 185-202 NCBITaxon:31033 denotes Takifugu rubripes
T1367 215-220 SO:0000704 denotes genes
T1368 242-247 NCBITaxon:9606 denotes human
T1369 248-253 PR:000016006 denotes TACC1
T1370 301-308 SO:0001026 denotes genomic
T1371 358-363 SO:0000704 denotes genes
T1372 401-405 SO:0000704 denotes gene
T1373 424-429 PR:000016008 denotes TACC3