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PMC:441373 / 43022-44651 JSONTXT

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Id Subject Object Predicate Lexical cue
T10445 0-3 DT denotes The
T10446 11-16 NN denotes TACC3
T10447 4-10 NN denotes rabbit
T10448 21-27 VBN denotes cloned
T10449 17-20 VBD denotes was
T10450 28-30 IN denotes by
T10451 31-33 NN denotes rt
T10452 34-37 NN denotes PCR
T10453 33-34 HYPH denotes -
T10454 38-43 VBG denotes using
T10455 44-47 DT denotes the
T10456 65-71 NN denotes primer
T10457 48-49 `` denotes "
T10458 56-64 JJ denotes specific
T10459 49-54 NN denotes TACC4
T10460 54-55 '' denotes "
T10461 72-79 NN denotes T4RACE2
T10462 80-81 -LRB- denotes [
T10463 81-82 CD denotes 9
T10464 82-83 -RRB- denotes ]
T10465 84-85 -LRB- denotes (
T10466 88-115 NN denotes cccgaactgctccaggtaatcgatctc
T10467 85-86 CD denotes 5
T10468 86-87 SYM denotes '
T10469 87-88 HYPH denotes -
T10470 115-116 HYPH denotes -
T10471 116-117 CD denotes 3
T10472 117-118 SYM denotes '
T10473 118-119 -RRB- denotes )
T10474 120-123 CC denotes and
T10475 124-125 DT denotes a
T10476 136-142 NN denotes primer
T10477 126-135 NN denotes consensus
T10478 142-144 , denotes ,
T10479 144-150 NN denotes T3con2
T10480 150-152 , denotes ,
T10481 152-160 VBN denotes designed
T10482 161-163 IN denotes to
T10483 164-167 DT denotes the
T10484 168-174 NN denotes region
T10485 175-187 VBG denotes encompassing
T10486 188-191 DT denotes the
T10487 209-218 NN denotes initiator
T10488 192-202 NN denotes vertebrate
T10489 203-208 NN denotes TACC3
T10490 219-229 NN denotes methionine
T10491 230-231 -LRB- denotes (
T10492 234-259 NN denotes tatgagtctgcaggtcttaaacgac
T10493 231-232 CD denotes 5
T10494 232-233 SYM denotes '
T10495 233-234 HYPH denotes -
T10496 259-260 HYPH denotes -
T10497 260-261 CD denotes 3
T10498 261-262 SYM denotes '
T10499 262-263 -RRB- denotes )
T10500 263-264 . denotes .
T10501 264-650 sentence denotes For cloning the mouse Tacc1X cDNA, the primers used were based upon the genomic sequence reported, and the sequence of the IMAGE cDNA clone 4933429K08: T1XF (5'-ccatgttcagtcattggcaggtc-3'), T1XF2 (5'-ctgcagaaccaacagttcaag-3'), T1XR1 (5'-agatctgtgacatcacagctc-3'), T1XR2 (5'-ctcgagtcagttagtcttatccagctt-3'), BB617F (5'-accaccaacttgagtacctg-3') and BB617R (5'-gtatcttgaactgttggttctg-3').
T10502 265-268 IN denotes For
T10503 322-327 VBN denotes based
T10504 269-276 VBG denotes cloning
T10505 277-280 DT denotes the
T10506 294-298 NN denotes cDNA
T10507 281-286 NN denotes mouse
T10508 287-293 NN denotes Tacc1X
T10509 298-300 , denotes ,
T10510 300-303 DT denotes the
T10511 304-311 NNS denotes primers
T10512 312-316 VBN denotes used
T10513 317-321 VBD denotes were
T10514 328-332 IN denotes upon
T10515 333-336 DT denotes the
T10516 345-353 NN denotes sequence
T10517 337-344 JJ denotes genomic
T10518 354-362 VBN denotes reported
T10519 362-364 , denotes ,
T10520 364-367 CC denotes and
T10521 368-371 DT denotes the
T10522 372-380 NN denotes sequence
T10523 381-383 IN denotes of
T10524 384-387 DT denotes the
T10525 399-404 NN denotes clone
T10526 388-393 NN denotes IMAGE
T10527 394-398 NN denotes cDNA
T10528 405-415 NN denotes 4933429K08
T10529 415-417 : denotes :
T10530 417-421 NN denotes T1XF
T10531 422-423 -LRB- denotes (
T10532 426-449 NN denotes ccatgttcagtcattggcaggtc
T10533 423-424 CD denotes 5
T10534 424-425 SYM denotes '
T10535 425-426 HYPH denotes -
T10536 449-450 HYPH denotes -
T10537 450-451 CD denotes 3
T10538 451-452 SYM denotes '
T10539 452-453 -RRB- denotes )
T10540 453-455 , denotes ,
T10541 455-460 NN denotes T1XF2
T10542 461-462 -LRB- denotes (
T10543 465-486 NN denotes ctgcagaaccaacagttcaag
T10544 462-463 CD denotes 5
T10545 463-464 SYM denotes '
T10546 464-465 HYPH denotes -
T10547 486-487 HYPH denotes -
T10548 487-488 CD denotes 3
T10549 488-489 SYM denotes '
T10550 489-490 -RRB- denotes )
T10551 490-492 , denotes ,
T10552 492-497 NN denotes T1XR1
T10553 498-499 -LRB- denotes (
T10554 502-523 NN denotes agatctgtgacatcacagctc
T10555 499-500 CD denotes 5
T10556 500-501 SYM denotes '
T10557 501-502 HYPH denotes -
T10558 523-524 HYPH denotes -
T10559 524-525 CD denotes 3
T10560 525-526 SYM denotes '
T10561 526-527 -RRB- denotes )
T10562 527-529 , denotes ,
T10563 529-534 NN denotes T1XR2
T10564 535-536 -LRB- denotes (
T10565 539-566 NN denotes ctcgagtcagttagtcttatccagctt
T10566 536-537 CD denotes 5
T10567 537-538 SYM denotes '
T10568 538-539 HYPH denotes -
T10569 566-567 HYPH denotes -
T10570 567-568 CD denotes 3
T10571 568-569 SYM denotes '
T10572 569-570 -RRB- denotes )
T10573 570-572 , denotes ,
T10574 572-578 NN denotes BB617F
T10575 579-580 -LRB- denotes (
T10576 583-603 NN denotes accaccaacttgagtacctg
T10577 580-581 CD denotes 5
T10578 581-582 SYM denotes '
T10579 582-583 HYPH denotes -
T10580 603-604 HYPH denotes -
T10581 604-605 CD denotes 3
T10582 605-606 SYM denotes '
T10583 606-607 -RRB- denotes )
T10584 608-611 CC denotes and
T10585 612-618 NN denotes BB617R
T10586 619-620 -LRB- denotes (
T10587 623-645 NN denotes gtatcttgaactgttggttctg
T10588 620-621 CD denotes 5
T10589 621-622 SYM denotes '
T10590 622-623 HYPH denotes -
T10591 645-646 HYPH denotes -
T10592 646-647 CD denotes 3
T10593 647-648 SYM denotes '
T10594 648-649 -RRB- denotes )
T10595 649-650 . denotes .
T10596 650-857 sentence denotes For analysis of TACC1 splice variants, the forward primers used were located in exon 1b: EF (5'-gagagatgcgaaatcagcg-3'), Exon 1d: X3F (5'-agtcaaagaaggcatctgcag-3'), Exon 1a: 1DF (5'-ccaagttctgcgccatggg-3').
T10597 651-654 IN denotes For
T10598 720-727 VBN denotes located
T10599 655-663 NN denotes analysis
T10600 664-666 IN denotes of
T10601 667-672 NN denotes TACC1
T10602 680-688 NNS denotes variants
T10603 673-679 NN denotes splice
T10604 688-690 , denotes ,
T10605 690-693 DT denotes the
T10606 702-709 NNS denotes primers
T10607 694-701 JJ denotes forward
T10608 710-714 VBN denotes used
T10609 715-719 VBD denotes were
T10610 728-730 IN denotes in
T10611 731-735 NN denotes exon
T10612 736-738 CD denotes 1b
T10613 738-740 : denotes :
T10614 740-742 NN denotes EF
T10615 747-766 NN denotes gagagatgcgaaatcagcg
T10616 743-744 -LRB- denotes (
T10617 744-745 CD denotes 5
T10618 745-746 SYM denotes '
T10619 746-747 HYPH denotes -
T10620 766-767 HYPH denotes -
T10621 767-768 CD denotes 3
T10622 768-769 SYM denotes '
T10623 769-770 -RRB- denotes )
T10624 770-772 , denotes ,
T10625 772-776 NN denotes Exon
T10626 777-779 CD denotes 1d
T10627 779-781 : denotes :
T10628 781-784 NN denotes X3F
T10629 789-810 NN denotes agtcaaagaaggcatctgcag
T10630 785-786 -LRB- denotes (
T10631 786-787 CD denotes 5
T10632 787-788 SYM denotes '
T10633 788-789 HYPH denotes -
T10634 810-811 HYPH denotes -
T10635 811-812 CD denotes 3
T10636 812-813 SYM denotes '
T10637 813-814 -RRB- denotes )
T10638 814-816 , denotes ,
T10639 816-820 NN denotes Exon
T10640 821-823 CD denotes 1a
T10641 823-825 : denotes :
T10642 825-828 NN denotes 1DF
T10643 833-852 NN denotes ccaagttctgcgccatggg
T10644 829-830 -LRB- denotes (
T10645 830-831 CD denotes 5
T10646 831-832 SYM denotes '
T10647 832-833 HYPH denotes -
T10648 852-853 HYPH denotes -
T10649 853-854 CD denotes 3
T10650 854-855 SYM denotes '
T10651 855-856 -RRB- denotes )
T10652 856-857 . denotes .
T10653 857-1116 sentence denotes The reverse primers used were: Exon 1: X1R (5'-ggatttggtctcggcttgcgaatc-3'), Exon 2: BX647R (5'-cttgtgattcttggcttttgg-3'), Exon 3: 6SPR (5'-gtcatcgcctcgtcctggagggc-3'), Exon 4a: 1DR (5'-aatttcacttgttcagtagtc-3'), Exon 5: 128R (5'-cctgcttctgaggatgaaaacgc-3').
T10654 858-861 DT denotes The
T10655 870-877 NNS denotes primers
T10656 862-869 JJ denotes reverse
T10657 883-887 VBD denotes were
T10658 878-882 VBN denotes used
T10659 887-889 : denotes :
T10660 889-893 NN denotes Exon
T10661 894-895 CD denotes 1
T10662 895-897 : denotes :
T10663 897-900 NN denotes X1R
T10664 905-929 NN denotes ggatttggtctcggcttgcgaatc
T10665 901-902 -LRB- denotes (
T10666 902-903 CD denotes 5
T10667 903-904 SYM denotes '
T10668 904-905 HYPH denotes -
T10669 929-930 HYPH denotes -
T10670 930-931 CD denotes 3
T10671 931-932 SYM denotes '
T10672 932-933 -RRB- denotes )
T10673 933-935 , denotes ,
T10674 935-939 NN denotes Exon
T10675 940-941 CD denotes 2
T10676 941-943 : denotes :
T10677 943-949 NN denotes BX647R
T10678 954-975 NN denotes cttgtgattcttggcttttgg
T10679 950-951 -LRB- denotes (
T10680 951-952 CD denotes 5
T10681 952-953 SYM denotes '
T10682 953-954 HYPH denotes -
T10683 975-976 HYPH denotes -
T10684 976-977 CD denotes 3
T10685 977-978 SYM denotes '
T10686 978-979 -RRB- denotes )
T10687 979-981 , denotes ,
T10688 981-985 NN denotes Exon
T10689 986-987 CD denotes 3
T10690 987-989 : denotes :
T10691 989-993 NN denotes 6SPR
T10692 998-1021 NN denotes gtcatcgcctcgtcctggagggc
T10693 994-995 -LRB- denotes (
T10694 995-996 CD denotes 5
T10695 996-997 SYM denotes '
T10696 997-998 HYPH denotes -
T10697 1021-1022 HYPH denotes -
T10698 1022-1023 CD denotes 3
T10699 1023-1024 SYM denotes '
T10700 1024-1025 -RRB- denotes )
T10701 1025-1027 , denotes ,
T10702 1027-1031 NN denotes Exon
T10703 1032-1034 NN denotes 4a
T10704 1034-1036 : denotes :
T10705 1036-1039 NN denotes 1DR
T10706 1044-1065 NN denotes aatttcacttgttcagtagtc
T10707 1040-1041 -LRB- denotes (
T10708 1041-1042 CD denotes 5
T10709 1042-1043 SYM denotes '
T10710 1043-1044 HYPH denotes -
T10711 1065-1066 HYPH denotes -
T10712 1066-1067 CD denotes 3
T10713 1067-1068 SYM denotes '
T10714 1068-1069 -RRB- denotes )
T10715 1069-1071 , denotes ,
T10716 1071-1075 NN denotes Exon
T10717 1076-1077 CD denotes 5
T10718 1077-1079 : denotes :
T10719 1079-1083 NN denotes 128R
T10720 1088-1111 NN denotes cctgcttctgaggatgaaaacgc
T10721 1084-1085 -LRB- denotes (
T10722 1085-1086 CD denotes 5
T10723 1086-1087 SYM denotes '
T10724 1087-1088 HYPH denotes -
T10725 1111-1112 HYPH denotes -
T10726 1112-1113 CD denotes 3
T10727 1113-1114 SYM denotes '
T10728 1114-1115 -RRB- denotes )
T10729 1115-1116 . denotes .
T10730 1116-1249 sentence denotes Rabbit brain poly A+ mRNA, mouse testis and human brain total RNA were obtained from BD Bioscience Clontech (Palo Alto, CA, U.S.A.).
T10731 1117-1123 NN denotes Rabbit
T10732 1124-1129 NN denotes brain
T10733 1138-1142 NN denotes mRNA
T10734 1130-1134 NN denotes poly
T10735 1135-1137 NN denotes A+
T10736 1188-1196 VBN denotes obtained
T10737 1142-1144 , denotes ,
T10738 1144-1149 NN denotes mouse
T10739 1150-1156 NN denotes testis
T10740 1157-1160 CC denotes and
T10741 1161-1166 JJ denotes human
T10742 1167-1172 NN denotes brain
T10743 1179-1182 NN denotes RNA
T10744 1173-1178 JJ denotes total
T10745 1183-1187 VBD denotes were
T10746 1197-1201 IN denotes from
T10747 1202-1204 NNP denotes BD
T10748 1216-1224 NNP denotes Clontech
T10749 1205-1215 NNP denotes Bioscience
T10750 1225-1226 -LRB- denotes (
T10751 1226-1230 NNP denotes Palo
T10752 1231-1235 NNP denotes Alto
T10753 1235-1237 , denotes ,
T10754 1237-1239 NNP denotes CA
T10755 1239-1241 , denotes ,
T10756 1241-1247 NNP denotes U.S.A.
T10757 1247-1248 -RRB- denotes )
T10758 1248-1249 . denotes .
T10759 1249-1419 sentence denotes Reverse transcription and PCR was performed as previously described, using either 1 μg of total RNA or 50 ng of poly A+ mRNA as template for first strand cDNA synthesis.
T10760 1250-1257 JJ denotes Reverse
T10761 1258-1271 NN denotes transcription
T10762 1284-1293 VBN denotes performed
T10763 1272-1275 CC denotes and
T10764 1276-1279 NN denotes PCR
T10765 1280-1283 VBD denotes was
T10766 1294-1296 IN denotes as
T10767 1308-1317 VBN denotes described
T10768 1297-1307 RB denotes previously
T10769 1317-1319 , denotes ,
T10770 1319-1324 VBG denotes using
T10771 1325-1331 CC denotes either
T10772 1334-1336 NN denotes μg
T10773 1332-1333 CD denotes 1
T10774 1337-1339 IN denotes of
T10775 1340-1345 JJ denotes total
T10776 1346-1349 NN denotes RNA
T10777 1350-1352 CC denotes or
T10778 1353-1355 CD denotes 50
T10779 1356-1358 NNS denotes ng
T10780 1359-1361 IN denotes of
T10781 1362-1366 NN denotes poly
T10782 1367-1369 NN denotes A+
T10783 1370-1374 NN denotes mRNA
T10784 1375-1377 IN denotes as
T10785 1378-1386 NN denotes template
T10786 1387-1390 IN denotes for
T10787 1391-1396 JJ denotes first
T10788 1397-1403 NN denotes strand
T10789 1404-1408 NN denotes cDNA
T10790 1409-1418 NN denotes synthesis
T10791 1418-1419 . denotes .
T10792 1419-1535 sentence denotes PCR products were cloned into pCR2.1 (Invitrogen, Carlsbad CA, U.S.A.) and transformed into InvαF' competent cells.
T10793 1420-1423 NN denotes PCR
T10794 1424-1432 NNS denotes products
T10795 1438-1444 VBN denotes cloned
T10796 1433-1437 VBD denotes were
T10797 1445-1449 IN denotes into
T10798 1450-1456 NN denotes pCR2.1
T10799 1457-1458 -LRB- denotes (
T10800 1458-1468 NNP denotes Invitrogen
T10801 1468-1470 , denotes ,
T10802 1470-1478 NNP denotes Carlsbad
T10803 1479-1481 NNP denotes CA
T10804 1481-1483 , denotes ,
T10805 1483-1489 NNP denotes U.S.A.
T10806 1489-1490 -RRB- denotes )
T10807 1491-1494 CC denotes and
T10808 1495-1506 VBN denotes transformed
T10809 1507-1511 IN denotes into
T10810 1512-1517 NN denotes InvαF
T10811 1519-1528 JJ denotes competent
T10812 1517-1518 POS denotes '
T10813 1529-1534 NNS denotes cells
T10814 1534-1535 . denotes .
T10815 1535-1629 sentence denotes Plasmid inserts were sequenced by the Roswell Park Cancer Institute Biopolymer Core Facility.
T10816 1536-1543 NN denotes Plasmid
T10817 1544-1551 NNS denotes inserts
T10818 1557-1566 VBN denotes sequenced
T10819 1552-1556 VBD denotes were
T10820 1567-1569 IN denotes by
T10821 1570-1573 DT denotes the
T10822 1620-1628 NNP denotes Facility
T10823 1574-1581 NNP denotes Roswell
T10824 1582-1586 NNP denotes Park
T10825 1594-1603 NNP denotes Institute
T10826 1587-1593 NNP denotes Cancer
T10827 1604-1614 NNP denotes Biopolymer
T10828 1615-1619 NNP denotes Core
T10829 1628-1629 . denotes .
R6692 T10445 T10446 det The,TACC3
R6693 T10446 T10448 nsubjpass TACC3,cloned
R6694 T10447 T10446 compound rabbit,TACC3
R6695 T10449 T10448 auxpass was,cloned
R6696 T10450 T10448 prep by,cloned
R6697 T10451 T10452 compound rt,PCR
R6698 T10452 T10450 pobj PCR,by
R6699 T10453 T10452 punct -,PCR
R6700 T10454 T10448 advcl using,cloned
R6701 T10455 T10456 det the,primer
R6702 T10456 T10454 dobj primer,using
R6703 T10457 T10458 punct """",specific
R6704 T10458 T10456 amod specific,primer
R6705 T10459 T10458 npadvmod TACC4,specific
R6706 T10460 T10458 punct """",specific
R6707 T10461 T10456 appos T4RACE2,primer
R6708 T10462 T10463 punct [,9
R6709 T10463 T10456 parataxis 9,primer
R6710 T10464 T10463 punct ],9
R6711 T10465 T10466 punct (,cccgaactgctccaggtaatcgatctc
R6712 T10466 T10456 parataxis cccgaactgctccaggtaatcgatctc,primer
R6713 T10467 T10466 nummod 5,cccgaactgctccaggtaatcgatctc
R6714 T10468 T10467 punct ',5
R6715 T10469 T10466 punct -,cccgaactgctccaggtaatcgatctc
R6716 T10470 T10466 punct -,cccgaactgctccaggtaatcgatctc
R6717 T10471 T10466 nummod 3,cccgaactgctccaggtaatcgatctc
R6718 T10472 T10466 punct ',cccgaactgctccaggtaatcgatctc
R6719 T10473 T10466 punct ),cccgaactgctccaggtaatcgatctc
R6720 T10474 T10456 cc and,primer
R6721 T10475 T10476 det a,primer
R6722 T10476 T10456 conj primer,primer
R6723 T10477 T10476 compound consensus,primer
R6724 T10478 T10476 punct ", ",primer
R6725 T10479 T10476 appos T3con2,primer
R6726 T10480 T10476 punct ", ",primer
R6727 T10481 T10476 acl designed,primer
R6728 T10482 T10481 prep to,designed
R6729 T10483 T10484 det the,region
R6730 T10484 T10482 pobj region,to
R6731 T10485 T10484 acl encompassing,region
R6732 T10486 T10487 det the,initiator
R6733 T10487 T10485 dobj initiator,encompassing
R6734 T10488 T10487 compound vertebrate,initiator
R6735 T10489 T10487 compound TACC3,initiator
R6736 T10490 T10487 appos methionine,initiator
R6737 T10491 T10492 punct (,tatgagtctgcaggtcttaaacgac
R6738 T10492 T10487 parataxis tatgagtctgcaggtcttaaacgac,initiator
R6739 T10493 T10492 nummod 5,tatgagtctgcaggtcttaaacgac
R6740 T10494 T10493 punct ',5
R6741 T10495 T10492 punct -,tatgagtctgcaggtcttaaacgac
R6742 T10496 T10492 punct -,tatgagtctgcaggtcttaaacgac
R6743 T10497 T10492 nummod 3,tatgagtctgcaggtcttaaacgac
R6744 T10498 T10492 punct ',tatgagtctgcaggtcttaaacgac
R6745 T10499 T10492 punct ),tatgagtctgcaggtcttaaacgac
R6746 T10500 T10448 punct .,cloned
R6747 T10502 T10503 prep For,based
R6748 T10504 T10502 pcomp cloning,For
R6749 T10505 T10506 det the,cDNA
R6750 T10506 T10504 dobj cDNA,cloning
R6751 T10507 T10508 compound mouse,Tacc1X
R6752 T10508 T10506 compound Tacc1X,cDNA
R6753 T10509 T10503 punct ", ",based
R6754 T10510 T10511 det the,primers
R6755 T10511 T10503 nsubjpass primers,based
R6756 T10512 T10511 acl used,primers
R6757 T10513 T10503 auxpass were,based
R6758 T10514 T10503 prep upon,based
R6759 T10515 T10516 det the,sequence
R6760 T10516 T10514 pobj sequence,upon
R6761 T10517 T10516 amod genomic,sequence
R6762 T10518 T10516 acl reported,sequence
R6763 T10519 T10516 punct ", ",sequence
R6764 T10520 T10516 cc and,sequence
R6765 T10521 T10522 det the,sequence
R6766 T10522 T10516 conj sequence,sequence
R6767 T10523 T10522 prep of,sequence
R6768 T10524 T10525 det the,clone
R6769 T10525 T10523 pobj clone,of
R6770 T10526 T10525 compound IMAGE,clone
R6771 T10527 T10525 compound cDNA,clone
R6772 T10528 T10525 appos 4933429K08,clone
R6773 T10529 T10522 punct : ,sequence
R6774 T10530 T10522 appos T1XF,sequence
R6775 T10531 T10532 punct (,ccatgttcagtcattggcaggtc
R6776 T10532 T10530 parataxis ccatgttcagtcattggcaggtc,T1XF
R6777 T10533 T10532 nummod 5,ccatgttcagtcattggcaggtc
R6778 T10534 T10533 punct ',5
R6779 T10535 T10532 punct -,ccatgttcagtcattggcaggtc
R6780 T10536 T10532 punct -,ccatgttcagtcattggcaggtc
R6781 T10537 T10532 nummod 3,ccatgttcagtcattggcaggtc
R6782 T10538 T10532 punct ',ccatgttcagtcattggcaggtc
R6783 T10539 T10532 punct ),ccatgttcagtcattggcaggtc
R6784 T10540 T10530 punct ", ",T1XF
R6785 T10541 T10530 conj T1XF2,T1XF
R6786 T10542 T10543 punct (,ctgcagaaccaacagttcaag
R6787 T10543 T10541 parataxis ctgcagaaccaacagttcaag,T1XF2
R6788 T10544 T10543 nummod 5,ctgcagaaccaacagttcaag
R6789 T10545 T10544 punct ',5
R6790 T10546 T10543 punct -,ctgcagaaccaacagttcaag
R6791 T10547 T10543 punct -,ctgcagaaccaacagttcaag
R6792 T10548 T10543 nummod 3,ctgcagaaccaacagttcaag
R6793 T10549 T10543 punct ',ctgcagaaccaacagttcaag
R6794 T10550 T10543 punct ),ctgcagaaccaacagttcaag
R6795 T10551 T10541 punct ", ",T1XF2
R6796 T10552 T10541 conj T1XR1,T1XF2
R6797 T10553 T10554 punct (,agatctgtgacatcacagctc
R6798 T10554 T10552 parataxis agatctgtgacatcacagctc,T1XR1
R6799 T10555 T10554 nummod 5,agatctgtgacatcacagctc
R6800 T10556 T10555 punct ',5
R6801 T10557 T10554 punct -,agatctgtgacatcacagctc
R6802 T10558 T10554 punct -,agatctgtgacatcacagctc
R6803 T10559 T10554 nummod 3,agatctgtgacatcacagctc
R6804 T10560 T10554 punct ',agatctgtgacatcacagctc
R6805 T10561 T10554 punct ),agatctgtgacatcacagctc
R6806 T10562 T10552 punct ", ",T1XR1
R6807 T10563 T10552 conj T1XR2,T1XR1
R6808 T10564 T10565 punct (,ctcgagtcagttagtcttatccagctt
R6809 T10565 T10563 parataxis ctcgagtcagttagtcttatccagctt,T1XR2
R6810 T10566 T10565 nummod 5,ctcgagtcagttagtcttatccagctt
R6811 T10567 T10566 punct ',5
R6812 T10568 T10565 punct -,ctcgagtcagttagtcttatccagctt
R6813 T10569 T10565 punct -,ctcgagtcagttagtcttatccagctt
R6814 T10570 T10565 nummod 3,ctcgagtcagttagtcttatccagctt
R6815 T10571 T10565 punct ',ctcgagtcagttagtcttatccagctt
R6816 T10572 T10565 punct ),ctcgagtcagttagtcttatccagctt
R6817 T10573 T10563 punct ", ",T1XR2
R6818 T10574 T10563 conj BB617F,T1XR2
R6819 T10575 T10576 punct (,accaccaacttgagtacctg
R6820 T10576 T10574 parataxis accaccaacttgagtacctg,BB617F
R6821 T10577 T10576 nummod 5,accaccaacttgagtacctg
R6822 T10578 T10577 punct ',5
R6823 T10579 T10576 punct -,accaccaacttgagtacctg
R6824 T10580 T10576 punct -,accaccaacttgagtacctg
R6825 T10581 T10576 nummod 3,accaccaacttgagtacctg
R6826 T10582 T10576 punct ',accaccaacttgagtacctg
R6827 T10583 T10576 punct ),accaccaacttgagtacctg
R6828 T10584 T10574 cc and,BB617F
R6829 T10585 T10574 conj BB617R,BB617F
R6830 T10586 T10587 punct (,gtatcttgaactgttggttctg
R6831 T10587 T10585 parataxis gtatcttgaactgttggttctg,BB617R
R6832 T10588 T10587 nummod 5,gtatcttgaactgttggttctg
R6833 T10589 T10588 punct ',5
R6834 T10590 T10587 punct -,gtatcttgaactgttggttctg
R6835 T10591 T10587 punct -,gtatcttgaactgttggttctg
R6836 T10592 T10587 nummod 3,gtatcttgaactgttggttctg
R6837 T10593 T10587 punct ',gtatcttgaactgttggttctg
R6838 T10594 T10587 punct ),gtatcttgaactgttggttctg
R6839 T10595 T10503 punct .,based
R6840 T10597 T10598 prep For,located
R6841 T10599 T10597 pobj analysis,For
R6842 T10600 T10599 prep of,analysis
R6843 T10601 T10602 compound TACC1,variants
R6844 T10602 T10600 pobj variants,of
R6845 T10603 T10602 compound splice,variants
R6846 T10604 T10598 punct ", ",located
R6847 T10605 T10606 det the,primers
R6848 T10606 T10598 nsubjpass primers,located
R6849 T10607 T10606 amod forward,primers
R6850 T10608 T10606 acl used,primers
R6851 T10609 T10598 auxpass were,located
R6852 T10610 T10598 prep in,located
R6853 T10611 T10610 pobj exon,in
R6854 T10612 T10611 nummod 1b,exon
R6855 T10613 T10611 punct : ,exon
R6856 T10614 T10615 dep EF,gagagatgcgaaatcagcg
R6857 T10615 T10611 parataxis gagagatgcgaaatcagcg,exon
R6858 T10616 T10615 punct (,gagagatgcgaaatcagcg
R6859 T10617 T10615 nummod 5,gagagatgcgaaatcagcg
R6860 T10618 T10617 punct ',5
R6861 T10619 T10615 punct -,gagagatgcgaaatcagcg
R6862 T10620 T10615 punct -,gagagatgcgaaatcagcg
R6863 T10621 T10615 nummod 3,gagagatgcgaaatcagcg
R6864 T10622 T10615 punct ',gagagatgcgaaatcagcg
R6865 T10623 T10615 punct ),gagagatgcgaaatcagcg
R6866 T10624 T10611 punct ", ",exon
R6867 T10625 T10611 appos Exon,exon
R6868 T10626 T10625 nummod 1d,Exon
R6869 T10627 T10625 punct : ,Exon
R6870 T10628 T10629 dep X3F,agtcaaagaaggcatctgcag
R6871 T10629 T10625 parataxis agtcaaagaaggcatctgcag,Exon
R6872 T10630 T10629 punct (,agtcaaagaaggcatctgcag
R6873 T10631 T10629 nummod 5,agtcaaagaaggcatctgcag
R6874 T10632 T10631 punct ',5
R6875 T10633 T10629 punct -,agtcaaagaaggcatctgcag
R6876 T10634 T10629 punct -,agtcaaagaaggcatctgcag
R6877 T10635 T10629 nummod 3,agtcaaagaaggcatctgcag
R6878 T10636 T10629 punct ',agtcaaagaaggcatctgcag
R6879 T10637 T10629 punct ),agtcaaagaaggcatctgcag
R6880 T10638 T10611 punct ", ",exon
R6881 T10639 T10611 appos Exon,exon
R6882 T10640 T10639 nummod 1a,Exon
R6883 T10641 T10639 punct : ,Exon
R6884 T10642 T10643 dep 1DF,ccaagttctgcgccatggg
R6885 T10643 T10639 parataxis ccaagttctgcgccatggg,Exon
R6886 T10644 T10643 punct (,ccaagttctgcgccatggg
R6887 T10645 T10643 nummod 5,ccaagttctgcgccatggg
R6888 T10646 T10645 punct ',5
R6889 T10647 T10643 punct -,ccaagttctgcgccatggg
R6890 T10648 T10643 punct -,ccaagttctgcgccatggg
R6891 T10649 T10643 nummod 3,ccaagttctgcgccatggg
R6892 T10650 T10643 punct ',ccaagttctgcgccatggg
R6893 T10651 T10643 punct ),ccaagttctgcgccatggg
R6894 T10652 T10598 punct .,located
R6895 T10654 T10655 det The,primers
R6896 T10655 T10657 nsubj primers,were
R6897 T10656 T10655 amod reverse,primers
R6898 T10658 T10655 acl used,primers
R6899 T10659 T10657 punct : ,were
R6900 T10660 T10657 attr Exon,were
R6901 T10661 T10660 nummod 1,Exon
R6902 T10662 T10660 punct : ,Exon
R6903 T10663 T10664 dep X1R,ggatttggtctcggcttgcgaatc
R6904 T10664 T10660 parataxis ggatttggtctcggcttgcgaatc,Exon
R6905 T10665 T10664 punct (,ggatttggtctcggcttgcgaatc
R6906 T10666 T10664 nummod 5,ggatttggtctcggcttgcgaatc
R6907 T10667 T10666 punct ',5
R6908 T10668 T10664 punct -,ggatttggtctcggcttgcgaatc
R6909 T10669 T10664 punct -,ggatttggtctcggcttgcgaatc
R6910 T10670 T10664 nummod 3,ggatttggtctcggcttgcgaatc
R6911 T10671 T10664 punct ',ggatttggtctcggcttgcgaatc
R6912 T10672 T10664 punct ),ggatttggtctcggcttgcgaatc
R6913 T10673 T10660 punct ", ",Exon
R6914 T10674 T10660 appos Exon,Exon
R6915 T10675 T10674 nummod 2,Exon
R6916 T10676 T10674 punct : ,Exon
R6917 T10677 T10678 dep BX647R,cttgtgattcttggcttttgg
R6918 T10678 T10674 parataxis cttgtgattcttggcttttgg,Exon
R6919 T10679 T10678 punct (,cttgtgattcttggcttttgg
R6920 T10680 T10678 nummod 5,cttgtgattcttggcttttgg
R6921 T10681 T10680 punct ',5
R6922 T10682 T10678 punct -,cttgtgattcttggcttttgg
R6923 T10683 T10678 punct -,cttgtgattcttggcttttgg
R6924 T10684 T10678 nummod 3,cttgtgattcttggcttttgg
R6925 T10685 T10678 punct ',cttgtgattcttggcttttgg
R6926 T10686 T10678 punct ),cttgtgattcttggcttttgg
R6927 T10687 T10660 punct ", ",Exon
R6928 T10688 T10660 appos Exon,Exon
R6929 T10689 T10688 nummod 3,Exon
R6930 T10690 T10688 punct : ,Exon
R6931 T10691 T10692 dep 6SPR,gtcatcgcctcgtcctggagggc
R6932 T10692 T10688 parataxis gtcatcgcctcgtcctggagggc,Exon
R6933 T10693 T10692 punct (,gtcatcgcctcgtcctggagggc
R6934 T10694 T10692 nummod 5,gtcatcgcctcgtcctggagggc
R6935 T10695 T10694 punct ',5
R6936 T10696 T10692 punct -,gtcatcgcctcgtcctggagggc
R6937 T10697 T10692 punct -,gtcatcgcctcgtcctggagggc
R6938 T10698 T10692 nummod 3,gtcatcgcctcgtcctggagggc
R6939 T10699 T10692 punct ',gtcatcgcctcgtcctggagggc
R6940 T10700 T10692 punct ),gtcatcgcctcgtcctggagggc
R6941 T10701 T10660 punct ", ",Exon
R6942 T10702 T10703 compound Exon,4a
R6943 T10703 T10660 appos 4a,Exon
R6944 T10704 T10703 punct : ,4a
R6945 T10705 T10706 dep 1DR,aatttcacttgttcagtagtc
R6946 T10706 T10703 parataxis aatttcacttgttcagtagtc,4a
R6947 T10707 T10706 punct (,aatttcacttgttcagtagtc
R6948 T10708 T10706 nummod 5,aatttcacttgttcagtagtc
R6949 T10709 T10708 punct ',5
R6950 T10710 T10706 punct -,aatttcacttgttcagtagtc
R6951 T10711 T10706 punct -,aatttcacttgttcagtagtc
R6952 T10712 T10706 nummod 3,aatttcacttgttcagtagtc
R6953 T10713 T10706 punct ',aatttcacttgttcagtagtc
R6954 T10714 T10706 punct ),aatttcacttgttcagtagtc
R6955 T10715 T10660 punct ", ",Exon
R6956 T10716 T10660 appos Exon,Exon
R6957 T10717 T10716 nummod 5,Exon
R6958 T10718 T10716 punct : ,Exon
R6959 T10719 T10720 dep 128R,cctgcttctgaggatgaaaacgc
R6960 T10720 T10716 parataxis cctgcttctgaggatgaaaacgc,Exon
R6961 T10721 T10720 punct (,cctgcttctgaggatgaaaacgc
R6962 T10722 T10720 nummod 5,cctgcttctgaggatgaaaacgc
R6963 T10723 T10722 punct ',5
R6964 T10724 T10720 punct -,cctgcttctgaggatgaaaacgc
R6965 T10725 T10720 punct -,cctgcttctgaggatgaaaacgc
R6966 T10726 T10720 nummod 3,cctgcttctgaggatgaaaacgc
R6967 T10727 T10720 punct ',cctgcttctgaggatgaaaacgc
R6968 T10728 T10720 punct ),cctgcttctgaggatgaaaacgc
R6969 T10729 T10657 punct .,were
R6970 T10731 T10732 compound Rabbit,brain
R6971 T10732 T10733 compound brain,mRNA
R6972 T10733 T10736 nsubjpass mRNA,obtained
R6973 T10734 T10733 compound poly,mRNA
R6974 T10735 T10733 compound A+,mRNA
R6975 T10737 T10733 punct ", ",mRNA
R6976 T10738 T10739 compound mouse,testis
R6977 T10739 T10733 conj testis,mRNA
R6978 T10740 T10739 cc and,testis
R6979 T10741 T10742 amod human,brain
R6980 T10742 T10743 nmod brain,RNA
R6981 T10743 T10739 conj RNA,testis
R6982 T10744 T10743 amod total,RNA
R6983 T10745 T10736 auxpass were,obtained
R6984 T10746 T10736 prep from,obtained
R6985 T10747 T10748 compound BD,Clontech
R6986 T10748 T10746 pobj Clontech,from
R6987 T10749 T10748 compound Bioscience,Clontech
R6988 T10750 T10748 punct (,Clontech
R6989 T10751 T10752 compound Palo,Alto
R6990 T10752 T10748 appos Alto,Clontech
R6991 T10753 T10752 punct ", ",Alto
R6992 T10754 T10752 npadvmod CA,Alto
R6993 T10755 T10752 punct ", ",Alto
R6994 T10756 T10752 npadvmod U.S.A.,Alto
R6995 T10757 T10748 punct ),Clontech
R6996 T10758 T10736 punct .,obtained
R6997 T10760 T10761 amod Reverse,transcription
R6998 T10761 T10762 nsubjpass transcription,performed
R6999 T10763 T10761 cc and,transcription
R7000 T10764 T10761 conj PCR,transcription
R7001 T10765 T10762 auxpass was,performed
R7002 T10766 T10767 mark as,described
R7003 T10767 T10762 advcl described,performed
R7004 T10768 T10767 advmod previously,described
R7005 T10769 T10762 punct ", ",performed
R7006 T10770 T10762 advcl using,performed
R7007 T10771 T10772 preconj either,μg
R7008 T10772 T10770 dobj μg,using
R7009 T10773 T10772 nummod 1,μg
R7010 T10774 T10772 prep of,μg
R7011 T10775 T10776 amod total,RNA
R7012 T10776 T10774 pobj RNA,of
R7013 T10777 T10772 cc or,μg
R7014 T10778 T10779 nummod 50,ng
R7015 T10779 T10772 conj ng,μg
R7016 T10780 T10779 prep of,ng
R7017 T10781 T10782 compound poly,A+
R7018 T10782 T10783 compound A+,mRNA
R7019 T10783 T10780 pobj mRNA,of
R7020 T10784 T10770 prep as,using
R7021 T10785 T10784 pobj template,as
R7022 T10786 T10785 prep for,template
R7023 T10787 T10788 amod first,strand
R7024 T10788 T10789 compound strand,cDNA
R7025 T10789 T10790 compound cDNA,synthesis
R7026 T10790 T10786 pobj synthesis,for
R7027 T10791 T10762 punct .,performed
R7028 T10793 T10794 compound PCR,products
R7029 T10794 T10795 nsubjpass products,cloned
R7030 T10796 T10795 auxpass were,cloned
R7031 T10797 T10795 prep into,cloned
R7032 T10798 T10797 pobj pCR2.1,into
R7033 T10799 T10800 punct (,Invitrogen
R7034 T10800 T10798 parataxis Invitrogen,pCR2.1
R7035 T10801 T10800 punct ", ",Invitrogen
R7036 T10802 T10800 npadvmod Carlsbad,Invitrogen
R7037 T10803 T10800 npadvmod CA,Invitrogen
R7038 T10804 T10800 punct ", ",Invitrogen
R7039 T10805 T10800 npadvmod U.S.A.,Invitrogen
R7040 T10806 T10800 punct ),Invitrogen
R7041 T10807 T10795 cc and,cloned
R7042 T10808 T10795 conj transformed,cloned
R7043 T10809 T10808 prep into,transformed
R7044 T10810 T10811 poss InvαF,competent
R7045 T10811 T10813 amod competent,cells
R7046 T10812 T10810 case ',InvαF
R7047 T10813 T10809 pobj cells,into
R7048 T10814 T10795 punct .,cloned
R7049 T10816 T10817 compound Plasmid,inserts
R7050 T10817 T10818 nsubjpass inserts,sequenced
R7051 T10819 T10818 auxpass were,sequenced
R7052 T10820 T10818 agent by,sequenced
R7053 T10821 T10822 det the,Facility
R7054 T10822 T10820 pobj Facility,by
R7055 T10823 T10824 compound Roswell,Park
R7056 T10824 T10825 compound Park,Institute
R7057 T10825 T10822 compound Institute,Facility
R7058 T10826 T10825 compound Cancer,Institute
R7059 T10827 T10828 compound Biopolymer,Core
R7060 T10828 T10822 compound Core,Facility
R7061 T10829 T10818 punct .,sequenced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10385 4-10 NCBITaxon:9986 denotes rabbit
T10386 11-16 PR_EXT:000016008 denotes TACC3
T10387 21-27 SO_EXT:sequence_cloning_process denotes cloned
T10388 31-33 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes rt
T10389 65-71 SO_EXT:0000112 denotes primer
T10390 126-135 SO:0000993 denotes consensus
T10391 136-142 SO_EXT:0000112 denotes primer
T10392 192-202 NCBITaxon:7742 denotes vertebrate
T10393 203-208 PR_EXT:000016008 denotes TACC3
T10394 219-229 CHEBI_SO_EXT:methionine denotes methionine
T10395 269-276 SO_EXT:sequence_cloning_process denotes cloning
T10396 281-286 NCBITaxon:10088 denotes mouse
T10397 294-298 SO_EXT:cDNA denotes cDNA
T10398 304-311 SO_EXT:0000112 denotes primers
T10399 337-344 SO_EXT:0001026 denotes genomic
T10400 345-353 SO_EXT:biological_sequence denotes sequence
T10401 372-380 SO_EXT:biological_sequence denotes sequence
T10402 394-404 SO_EXT:0000317 denotes cDNA clone
T10403 667-672 PR_EXT:000016006 denotes TACC1
T10404 673-679 GO:0000380 denotes splice
T10405 673-688 SO_EXT:alternative_splice_variant denotes splice variants
T10406 694-709 SO_EXT:0000121 denotes forward primers
T10407 731-735 SO_EXT:0000147 denotes exon
T10408 772-776 SO_EXT:0000147 denotes Exon
T10409 816-820 SO_EXT:0000147 denotes Exon
T10410 862-877 SO_EXT:0000132 denotes reverse primers
T10411 889-893 SO_EXT:0000147 denotes Exon
T10412 935-939 SO_EXT:0000147 denotes Exon
T10413 981-985 SO_EXT:0000147 denotes Exon
T10414 1027-1031 SO_EXT:0000147 denotes Exon
T10415 1071-1075 SO_EXT:0000147 denotes Exon
T10416 1117-1123 NCBITaxon:9986 denotes Rabbit
T10417 1124-1129 UBERON:0000955 denotes brain
T10418 1130-1137 SO_EXT:0000610 denotes poly A+
T10419 1135-1136 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T10420 1138-1142 CHEBI_SO_EXT:mRNA denotes mRNA
T10421 1144-1149 NCBITaxon:10088 denotes mouse
T10422 1150-1156 UBERON:0000473 denotes testis
T10423 1161-1166 NCBITaxon:9606 denotes human
T10424 1167-1172 UBERON:0000955 denotes brain
T10425 1179-1182 CHEBI_SO_EXT:RNA denotes RNA
T10426 1250-1271 GO:0001171 denotes Reverse transcription
T10427 1346-1349 CHEBI_SO_EXT:RNA denotes RNA
T10428 1362-1369 SO_EXT:0000610 denotes poly A+
T10429 1367-1368 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T10430 1370-1374 CHEBI_SO_EXT:mRNA denotes mRNA
T10431 1404-1408 SO_EXT:cDNA denotes cDNA
T10432 1420-1432 SO_EXT:0000006 denotes PCR products
T10433 1438-1444 SO_EXT:sequence_cloning_process denotes cloned
T10434 1495-1506 GO:0009294 denotes transformed
T10435 1529-1534 CL_GO_EXT:cell denotes cells
T10436 1536-1543 SO_EXT:0000155 denotes Plasmid
T10437 1544-1551 SO_EXT:0000667 denotes inserts
T10438 1604-1614 CHEBI:33694 denotes Biopolymer

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10345 4-10 NCBITaxon:9986 denotes rabbit
T10346 11-16 PR:000016008 denotes TACC3
T10347 65-71 SO:0000112 denotes primer
T10348 126-135 SO:0000993 denotes consensus
T10349 136-142 SO:0000112 denotes primer
T10350 192-202 NCBITaxon:7742 denotes vertebrate
T10351 203-208 PR:000016008 denotes TACC3
T10352 281-286 NCBITaxon:10088 denotes mouse
T10353 304-311 SO:0000112 denotes primers
T10354 337-344 SO:0001026 denotes genomic
T10355 394-404 SO:0000317 denotes cDNA clone
T10356 667-672 PR:000016006 denotes TACC1
T10357 673-679 GO:0000380 denotes splice
T10358 694-709 SO:0000121 denotes forward primers
T10359 731-735 SO:0000147 denotes exon
T10360 772-776 SO:0000147 denotes Exon
T10361 816-820 SO:0000147 denotes Exon
T10362 862-877 SO:0000132 denotes reverse primers
T10363 889-893 SO:0000147 denotes Exon
T10364 935-939 SO:0000147 denotes Exon
T10365 981-985 SO:0000147 denotes Exon
T10366 1027-1031 SO:0000147 denotes Exon
T10367 1071-1075 SO:0000147 denotes Exon
T10368 1117-1123 NCBITaxon:9986 denotes Rabbit
T10369 1124-1129 UBERON:0000955 denotes brain
T10370 1130-1137 SO:0000610 denotes poly A+
T10371 1144-1149 NCBITaxon:10088 denotes mouse
T10372 1150-1156 UBERON:0000473 denotes testis
T10373 1161-1166 NCBITaxon:9606 denotes human
T10374 1167-1172 UBERON:0000955 denotes brain
T10375 1250-1271 GO:0001171 denotes Reverse transcription
T10376 1362-1369 SO:0000610 denotes poly A+
T10377 1420-1432 SO:0000006 denotes PCR products
T10378 1495-1506 GO:0009294 denotes transformed
T10379 1536-1543 SO:0000155 denotes Plasmid
T10380 1544-1551 SO:0000667 denotes inserts
T10381 1604-1614 CHEBI:33694 denotes Biopolymer

2_test

Id Subject Object Predicate Lexical cue
15207008-12015314-9666076 81-82 12015314 denotes 9